RNA–Protein interactions for RNA: ENST00000264010.8

CTCF-201, Transcript of CCCTC-binding factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTCF, Length 3,939 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-201ENST00000264010 NRBP2Q9NSY0 501 aa17.53■□□□□ 0.4
CTCF-201ENST00000264010 ZNF233A6NK53 670 aa17.53■□□□□ 0.4
CTCF-201ENST00000264010 F8VZ95 297 aa17.53■□□□□ 0.4
CTCF-201ENST00000264010 PTGER2P43116 358 aa17.53■□□□□ 0.4
CTCF-201ENST00000264010 HSD17B4P51659 736 aa17.53■□□□□ 0.4
CTCF-201ENST00000264010 NAIF1Q69YI7 327 aaPredicted RBP17.53■□□□□ 0.4
CTCF-201ENST00000264010 C4orf19Q8IY42 314 aa17.53■□□□□ 0.4
CTCF-201ENST00000264010 SCYL3Q8IZE3 742 aa17.53■□□□□ 0.4
CTCF-201ENST00000264010 USP38Q8NB14 1042 aa17.53■□□□□ 0.4
CTCF-201ENST00000264010 YIPF3Q9GZM5 350 aa17.53■□□□□ 0.4
CTCF-201ENST00000264010 NOC2LQ9Y3T9 749 aaKnown RBP17.53■□□□□ 0.4
CTCF-201ENST00000264010 PCDHGC5Q9Y5F6 944 aa17.53■□□□□ 0.4
CTCF-201ENST00000264010 UBR3Q6ZT12 1888 aa17.53■□□□□ 0.4
CTCF-201ENST00000264010 C19orf81C9J6K1 198 aa17.53■□□□□ 0.4
CTCF-201ENST00000264010 E7EVH7 732 aa17.53■□□□□ 0.4
CTCF-201ENST00000264010 OPLAHO14841 1288 aa17.53■□□□□ 0.4
CTCF-201ENST00000264010 FGGP02679 453 aa17.53■□□□□ 0.4
CTCF-201ENST00000264010 FTLP02792 175 aaPredicted RBP17.53■□□□□ 0.4
CTCF-201ENST00000264010 BPIFB4P59827 614 aa17.53■□□□□ 0.4
CTCF-201ENST00000264010 MSL3Q8N5Y2 521 aaKnown RBP17.53■□□□□ 0.4
CTCF-201ENST00000264010 CRYGNQ8WXF5 182 aa17.53■□□□□ 0.4
CTCF-201ENST00000264010 TEX13BQ9BXU2 312 aa17.53■□□□□ 0.4
CTCF-201ENST00000264010 IRF2BP2Q7Z5L9 587 aa17.53■□□□□ 0.4
CTCF-201ENST00000264010 SLC35G2Q8TBE7 412 aa17.53■□□□□ 0.4
CTCF-201ENST00000264010 MIF4GDA9UHW6 222 aaKnown RBP17.52■□□□□ 0.4
CTCF-201ENST00000264010 HSPA6P17066 643 aa17.52■□□□□ 0.4
CTCF-201ENST00000264010 SCP2P22307 547 aa17.52■□□□□ 0.4
CTCF-201ENST00000264010 CTNNA1P35221 906 aaKnown RBP17.52■□□□□ 0.4
CTCF-201ENST00000264010 NNTQ13423 1086 aa17.52■□□□□ 0.4
CTCF-201ENST00000264010 PPP1R7Q15435 360 aa17.52■□□□□ 0.4
CTCF-201ENST00000264010 ZNF746Q6NUN9 644 aaPredicted RBP17.52■□□□□ 0.4
CTCF-201ENST00000264010 CDAN1Q8IWY9 1227 aa17.52■□□□□ 0.4
CTCF-201ENST00000264010 GPRASP2Q96D09 838 aa17.52■□□□□ 0.4
CTCF-201ENST00000264010 CAPS2Q9BXY5 557 aa17.52■□□□□ 0.4
CTCF-201ENST00000264010 JPH1Q9HDC5 661 aaPredicted RBP17.52■□□□□ 0.4
CTCF-201ENST00000264010 PSD3Q9NYI0 1048 aa17.52■□□□□ 0.4
CTCF-201ENST00000264010 SUCLA2Q9P2R7 463 aaPredicted RBP17.52■□□□□ 0.4
CTCF-201ENST00000264010 SKAP2O75563 359 aaPredicted RBP17.52■□□□□ 0.4
CTCF-201ENST00000264010 BACE1P56817 501 aa17.52■□□□□ 0.4
CTCF-201ENST00000264010 PGM5Q15124 567 aa17.52■□□□□ 0.4
CTCF-201ENST00000264010 STXBP2Q15833 593 aa17.52■□□□□ 0.4
CTCF-201ENST00000264010 SEPT14Q6ZU15 432 aa17.52■□□□□ 0.4
CTCF-201ENST00000264010 HVCN1Q96D96 273 aa17.52■□□□□ 0.4
CTCF-201ENST00000264010 GMLQ99445 158 aa17.52■□□□□ 0.4
CTCF-201ENST00000264010 CBWD1Q9BRT8 395 aa17.52■□□□□ 0.4
CTCF-201ENST00000264010 GOLPH3Q9H4A6 298 aa17.52■□□□□ 0.4
CTCF-201ENST00000264010 PXMP2Q9NR77 195 aa17.52■□□□□ 0.4
CTCF-201ENST00000264010 SLC9A2Q9UBY0 812 aa17.52■□□□□ 0.4
CTCF-201ENST00000264010 UBIAD1Q9Y5Z9 338 aa17.52■□□□□ 0.4
CTCF-201ENST00000264010 PFASO15067 1338 aa17.52■□□□□ 0.39
CTCF-201ENST00000264010 A0A0A6YYK5 440 aaPredicted RBP17.52■□□□□ 0.39
CTCF-201ENST00000264010 CALCOCO2Q13137 446 aa17.52■□□□□ 0.39
CTCF-201ENST00000264010 CCDC6Q16204 474 aa17.52■□□□□ 0.39
CTCF-201ENST00000264010 ASTE1Q2TB18 679 aaPredicted RBP17.52■□□□□ 0.39
CTCF-201ENST00000264010 MUM1L1Q5H9M0 696 aa17.52■□□□□ 0.39
CTCF-201ENST00000264010 CAMKK2Q96RR4 588 aa17.52■□□□□ 0.39
CTCF-201ENST00000264010 NOP56O00567 594 aaKnown RBP17.51■□□□□ 0.39
CTCF-201ENST00000264010 DGAT1O75907 488 aa17.51■□□□□ 0.39
CTCF-201ENST00000264010 SNRNP35Q16560 246 aaKnown RBP17.51■□□□□ 0.39
CTCF-201ENST00000264010 NFIL3Q16649 462 aa17.51■□□□□ 0.39
CTCF-201ENST00000264010 CCDC105Q8IYK2 499 aa17.51■□□□□ 0.39
CTCF-201ENST00000264010 DDX47Q9H0S4 455 aaKnown RBP17.51■□□□□ 0.39
CTCF-201ENST00000264010 KIAA1586Q9HCI6 787 aa17.51■□□□□ 0.39
CTCF-201ENST00000264010 GPRC5CQ9NQ84 441 aa17.51■□□□□ 0.39
CTCF-201ENST00000264010 FAM53CQ9NYF3 392 aa17.51■□□□□ 0.39
CTCF-201ENST00000264010 FAM169AQ9Y6X4 670 aa17.51■□□□□ 0.39
CTCF-201ENST00000264010 NBPF12Q5TAG4 269 aaPredicted RBP17.51■□□□□ 0.39
CTCF-201ENST00000264010 FAM160B1Q5W0V3 765 aa17.51■□□□□ 0.39
CTCF-201ENST00000264010 IL31RAQ8NI17 732 aa17.51■□□□□ 0.39
CTCF-201ENST00000264010 TAF1DQ9H5J8 278 aaPredicted RBP17.51■□□□□ 0.39
CTCF-201ENST00000264010 FOXN3O00409 490 aaPredicted RBP17.51■□□□□ 0.39
CTCF-201ENST00000264010 NCAPG2Q86XI2 1143 aa17.51■□□□□ 0.39
CTCF-201ENST00000264010 SLC9A9Q8IVB4 645 aa17.51■□□□□ 0.39
CTCF-201ENST00000264010 CCDC50Q8IVM0 306 aa17.51■□□□□ 0.39
CTCF-201ENST00000264010 SLITRK6Q9H5Y7 841 aa17.51■□□□□ 0.39
CTCF-201ENST00000264010 DDX3XO00571 662 aaKnown RBP eCLIP17.5■□□□□ 0.396e-7■■□□□ 14
CTCF-201ENST00000264010 PIK3CAP42336 1068 aa17.5■□□□□ 0.39
CTCF-201ENST00000264010 GADL1Q6ZQY3 521 aa17.5■□□□□ 0.39
CTCF-201ENST00000264010 ZC3H3Q8IXZ2 948 aaKnown RBP17.5■□□□□ 0.39
CTCF-201ENST00000264010 FBXL13Q8NEE6 735 aa17.5■□□□□ 0.39
CTCF-201ENST00000264010 GLG1Q92896 1179 aa17.5■□□□□ 0.39
CTCF-201ENST00000264010 MAGOHBQ96A72 148 aaKnown RBP17.5■□□□□ 0.39
CTCF-201ENST00000264010 PAGR1Q9BTK6 254 aa17.5■□□□□ 0.39
CTCF-201ENST00000264010 COL2A1P02458 1487 aaPredicted RBP17.5■□□□□ 0.39
CTCF-201ENST00000264010 BTNL10A8MVZ5 291 aa17.5■□□□□ 0.39
CTCF-201ENST00000264010 ZNF131P52739 623 aa17.5■□□□□ 0.39
CTCF-201ENST00000264010 ANGEL2Q5VTE6 544 aaKnown RBP17.5■□□□□ 0.39
CTCF-201ENST00000264010 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP17.5■□□□□ 0.39
CTCF-201ENST00000264010 STK38LQ9Y2H1 464 aa17.5■□□□□ 0.39
CTCF-201ENST00000264010 TCP11Q8WWU5 503 aa17.5■□□□□ 0.39
CTCF-201ENST00000264010 SPDL1Q96EA4 605 aa17.5■□□□□ 0.39
CTCF-201ENST00000264010 FAM213AQ9BRX8 229 aa17.5■□□□□ 0.39
CTCF-201ENST00000264010 PARP2Q9UGN5 583 aa17.5■□□□□ 0.39
CTCF-201ENST00000264010 TBX20Q9UMR3 447 aa17.5■□□□□ 0.39
CTCF-201ENST00000264010 K7ERI5 159 aa17.49■□□□□ 0.39
CTCF-201ENST00000264010 SART1O43290 800 aaKnown RBP17.49■□□□□ 0.39
CTCF-201ENST00000264010 CARSP49589 748 aaKnown RBP17.49■□□□□ 0.39
CTCF-201ENST00000264010 METTL13Q8N6R0 699 aa17.49■□□□□ 0.39
CTCF-201ENST00000264010 HDAC7Q8WUI4 952 aa17.49■□□□□ 0.39
CTCF-201ENST00000264010 MAIP1Q8WWC4 291 aa17.49■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms