RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 PDE1CQ14123 709 aaPredicted RBP20.32■□□□□ 0.84
UPF1-201ENST00000262803 QRICH1Q2TAL8 776 aa20.32■□□□□ 0.84
UPF1-201ENST00000262803 FAM84BQ96KN1 310 aaPredicted RBP20.32■□□□□ 0.84
UPF1-201ENST00000262803 SPATA33Q96N06 139 aa20.32■□□□□ 0.84
UPF1-201ENST00000262803 PPP1R16BQ96T49 567 aa20.32■□□□□ 0.84
UPF1-201ENST00000262803 DYRK4Q9NR20 520 aa20.32■□□□□ 0.84
UPF1-201ENST00000262803 KRT82Q9NSB4 513 aa20.32■□□□□ 0.84
UPF1-201ENST00000262803 CRB1P82279 1406 aa20.32■□□□□ 0.84
UPF1-201ENST00000262803 ZBTB17Q13105 803 aa20.32■□□□□ 0.84
UPF1-201ENST00000262803 KCNB1Q14721 858 aa20.32■□□□□ 0.84
UPF1-201ENST00000262803 TDRD3Q9H7E2 651 aaKnown RBP20.32■□□□□ 0.84
UPF1-201ENST00000262803 PCDHA10Q9Y5I2 948 aa20.32■□□□□ 0.84
UPF1-201ENST00000262803 MADDQ8WXG6 1647 aa20.32■□□□□ 0.84
UPF1-201ENST00000262803 ESRRBO95718 433 aa20.31■□□□□ 0.84
UPF1-201ENST00000262803 CYBBP04839 570 aa20.31■□□□□ 0.84
UPF1-201ENST00000262803 CHRNA3P32297 505 aa20.31■□□□□ 0.84
UPF1-201ENST00000262803 COPS2P61201 443 aa20.31■□□□□ 0.84
UPF1-201ENST00000262803 DRAP1Q14919 205 aaPredicted RBP20.31■□□□□ 0.84
UPF1-201ENST00000262803 CDO1Q16878 200 aa20.31■□□□□ 0.84
UPF1-201ENST00000262803 STAG2Q8N3U4 1231 aa20.31■□□□□ 0.84
UPF1-201ENST00000262803 SRBD1Q8N5C6 995 aaKnown RBP20.31■□□□□ 0.84
UPF1-201ENST00000262803 ULK4Q96C45 1275 aa20.31■□□□□ 0.84
UPF1-201ENST00000262803 OLFML3Q9NRN5 406 aa20.31■□□□□ 0.84
UPF1-201ENST00000262803 RNF181Q9P0P0 153 aa20.31■□□□□ 0.84
UPF1-201ENST00000262803 CAPN11Q9UMQ6 739 aa20.31■□□□□ 0.84
UPF1-201ENST00000262803 INPP5FQ9Y2H2 1132 aa20.31■□□□□ 0.84
UPF1-201ENST00000262803 M0QYV0 167 aa20.31■□□□□ 0.84
UPF1-201ENST00000262803 ZNF197O14709 1029 aa20.31■□□□□ 0.84
UPF1-201ENST00000262803 ATP1A1P05023 1023 aaKnown RBP20.31■□□□□ 0.84
UPF1-201ENST00000262803 ZNF211Q13398 564 aaPredicted RBP20.31■□□□□ 0.84
UPF1-201ENST00000262803 BFARQ9NZS9 450 aa20.31■□□□□ 0.84
UPF1-201ENST00000262803 SPHKAPQ2M3C7 1700 aa20.31■□□□□ 0.84
UPF1-201ENST00000262803 HEATR6Q6AI08 1181 aaKnown RBP20.31■□□□□ 0.84
UPF1-201ENST00000262803 YAF2Q8IY57 180 aa20.31■□□□□ 0.84
UPF1-201ENST00000262803 HNRNPCL2B2RXH8 293 aa20.31■□□□□ 0.84
UPF1-201ENST00000262803 PPP1R12AO14974 1030 aaPredicted RBP20.31■□□□□ 0.84
UPF1-201ENST00000262803 HNRNPCL1O60812 293 aaKnown RBP20.31■□□□□ 0.84
UPF1-201ENST00000262803 PPP6R3Q5H9R7 873 aaPredicted RBP20.31■□□□□ 0.84
UPF1-201ENST00000262803 APOBEC2Q9Y235 224 aaKnown RBP20.31■□□□□ 0.84
UPF1-201ENST00000262803 SLC16A4O15374 487 aa20.3■□□□□ 0.84
UPF1-201ENST00000262803 MAGOHP61326 146 aaKnown RBP20.3■□□□□ 0.84
UPF1-201ENST00000262803 KIF19Q2TAC6 998 aa20.3■□□□□ 0.84
UPF1-201ENST00000262803 GABBR1Q9UBS5 961 aa20.3■□□□□ 0.84
UPF1-201ENST00000262803 GRIN3BO60391 1043 aa20.3■□□□□ 0.84
UPF1-201ENST00000262803 CHGBP05060 677 aa20.3■□□□□ 0.84
UPF1-201ENST00000262803 NCF2P19878 526 aaPredicted RBP20.3■□□□□ 0.84
UPF1-201ENST00000262803 SLC1A1P43005 524 aa20.3■□□□□ 0.84
UPF1-201ENST00000262803 MAGEA9P43362 315 aa20.3■□□□□ 0.84
UPF1-201ENST00000262803 E4F1Q66K89 784 aaPredicted RBP20.3■□□□□ 0.84
UPF1-201ENST00000262803 TMEM270Q6UE05 265 aa20.3■□□□□ 0.84
UPF1-201ENST00000262803 ADGRF4Q8IZF3 695 aa20.3■□□□□ 0.84
UPF1-201ENST00000262803 MAML1Q92585 1016 aa20.3■□□□□ 0.84
UPF1-201ENST00000262803 WDR35Q9P2L0 1181 aa20.3■□□□□ 0.84
UPF1-201ENST00000262803 L3MBTL1Q9Y468 752 aa20.3■□□□□ 0.84
UPF1-201ENST00000262803 MORC2Q9Y6X9 1032 aaPredicted RBP20.3■□□□□ 0.84
UPF1-201ENST00000262803 SNRPFP62306 86 aaKnown RBP20.3■□□□□ 0.84
UPF1-201ENST00000262803 CDK17Q00537 523 aa20.3■□□□□ 0.84
UPF1-201ENST00000262803 IMPG1Q17R60 797 aa20.3■□□□□ 0.84
UPF1-201ENST00000262803 DUOXA2Q1HG44 320 aa20.3■□□□□ 0.84
UPF1-201ENST00000262803 RHOT1Q8IXI2 618 aa20.3■□□□□ 0.84
UPF1-201ENST00000262803 BUD13Q9BRD0 619 aaKnown RBP eCLIP20.3■□□□□ 0.841e-6■■■□□ 16.8
UPF1-201ENST00000262803 SLC9A2Q9UBY0 812 aa20.3■□□□□ 0.84
UPF1-201ENST00000262803 POLIQ9UNA4 740 aa20.3■□□□□ 0.84
UPF1-201ENST00000262803 TADA3O75528 432 aa20.3■□□□□ 0.84
UPF1-201ENST00000262803 CCZ1BP86790 482 aa20.3■□□□□ 0.84
UPF1-201ENST00000262803 CCZ1P86791 482 aaPredicted RBP20.3■□□□□ 0.84
UPF1-201ENST00000262803 MAPRE2Q15555 327 aa20.3■□□□□ 0.84
UPF1-201ENST00000262803 FRMD5Q7Z6J6 570 aa20.3■□□□□ 0.84
UPF1-201ENST00000262803 ASAP3Q8TDY4 903 aa20.3■□□□□ 0.84
UPF1-201ENST00000262803 FAM213AQ9BRX8 229 aa20.3■□□□□ 0.84
UPF1-201ENST00000262803 INTS2Q9H0H0 1204 aaKnown RBP20.3■□□□□ 0.84
UPF1-201ENST00000262803 TSPOAP1O95153 1857 aa20.3■□□□□ 0.84
UPF1-201ENST00000262803 ANKRD40Q6AI12 368 aa20.29■□□□□ 0.84
UPF1-201ENST00000262803 C11orf70Q9BRQ4 267 aa20.29■□□□□ 0.84
UPF1-201ENST00000262803 MRGBPQ9NV56 204 aa20.29■□□□□ 0.84
UPF1-201ENST00000262803 RASA4BC9J798 803 aa20.29■□□□□ 0.84
UPF1-201ENST00000262803 RASA4O43374 803 aa20.29■□□□□ 0.84
UPF1-201ENST00000262803 PDIA5Q14554 519 aa20.29■□□□□ 0.84
UPF1-201ENST00000262803 SYDE1Q6ZW31 735 aaPredicted RBP20.29■□□□□ 0.84
UPF1-201ENST00000262803 PASD1Q8IV76 773 aa20.29■□□□□ 0.84
UPF1-201ENST00000262803 LZICQ8WZA0 190 aa20.29■□□□□ 0.84
UPF1-201ENST00000262803 ASIC4Q96FT7 647 aa20.29■□□□□ 0.84
UPF1-201ENST00000262803 PLA2G12BQ9BX93 195 aa20.29■□□□□ 0.84
UPF1-201ENST00000262803 IRX2Q9BZI1 471 aaPredicted RBP20.29■□□□□ 0.84
UPF1-201ENST00000262803 QRICH2Q9H0J4 1663 aa20.29■□□□□ 0.84
UPF1-201ENST00000262803 F5H6K3 240 aa20.29■□□□□ 0.84
UPF1-201ENST00000262803 CHUKO15111 745 aa20.29■□□□□ 0.84
UPF1-201ENST00000262803 GNA15P30679 374 aa20.29■□□□□ 0.84
UPF1-201ENST00000262803 HDLBPQ00341 1268 aaKnown RBP20.29■□□□□ 0.84
UPF1-201ENST00000262803 KLRC3Q07444 240 aa20.29■□□□□ 0.84
UPF1-201ENST00000262803 E2F4Q16254 413 aa20.29■□□□□ 0.84
UPF1-201ENST00000262803 BTBD8Q5XKL5 378 aa20.29■□□□□ 0.84
UPF1-201ENST00000262803 SYT2Q8N9I0 419 aaPredicted RBP20.29■□□□□ 0.84
UPF1-201ENST00000262803 PARK7Q99497 189 aaKnown RBP20.29■□□□□ 0.84
UPF1-201ENST00000262803 EIF2AK3Q9NZJ5 1116 aaKnown RBP20.29■□□□□ 0.84
UPF1-201ENST00000262803 LIMA1Q9UHB6 759 aaKnown RBP20.29■□□□□ 0.84
UPF1-201ENST00000262803 TBX3O15119 743 aa20.29■□□□□ 0.84
UPF1-201ENST00000262803 HMGB3O15347 200 aaKnown RBP20.29■□□□□ 0.84
UPF1-201ENST00000262803 MAGEB2O15479 319 aa20.29■□□□□ 0.84
UPF1-201ENST00000262803 ENTPD3O75355 529 aa20.29■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms