RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 SLC9A1P19634 815 aa12.5□□□□□ -0.41
VPS4A-201ENST00000254950 RNASE9P60153 205 aaKnown RBP12.5□□□□□ -0.41
VPS4A-201ENST00000254950 LMBRD2Q68DH5 695 aaPredicted RBP12.5□□□□□ -0.41
VPS4A-201ENST00000254950 BEST2Q8NFU1 509 aa12.5□□□□□ -0.41
VPS4A-201ENST00000254950 BRI3BPQ8WY22 251 aa12.5□□□□□ -0.41
VPS4A-201ENST00000254950 LENG9Q96B70 501 aa12.5□□□□□ -0.41
VPS4A-201ENST00000254950 KCNF1Q9H3M0 494 aa12.5□□□□□ -0.41
VPS4A-201ENST00000254950 APEX2Q9UBZ4 518 aa12.5□□□□□ -0.41
VPS4A-201ENST00000254950 CCNE2O96020 404 aa12.49□□□□□ -0.41
VPS4A-201ENST00000254950 PLCB3Q01970 1234 aa12.49□□□□□ -0.41
VPS4A-201ENST00000254950 TRIM59Q8IWR1 403 aa12.49□□□□□ -0.41
VPS4A-201ENST00000254950 COPS5Q92905 334 aa12.49□□□□□ -0.41
VPS4A-201ENST00000254950 ACAP3Q96P50 834 aa12.49□□□□□ -0.41
VPS4A-201ENST00000254950 PIN4Q9Y237 131 aaKnown RBP12.49□□□□□ -0.41
VPS4A-201ENST00000254950 GSTTP1A0A1W2PQM5 241 aa12.49□□□□□ -0.41
VPS4A-201ENST00000254950 EIF3CLB5ME19 914 aaKnown RBP12.49□□□□□ -0.41
VPS4A-201ENST00000254950 MED7O43513 233 aa12.49□□□□□ -0.41
VPS4A-201ENST00000254950 AKR1A1P14550 325 aa12.49□□□□□ -0.41
VPS4A-201ENST00000254950 SKIDA1Q1XH10 827 aa12.49□□□□□ -0.41
VPS4A-201ENST00000254950 EIF3CQ99613 913 aaKnown RBP12.49□□□□□ -0.41
VPS4A-201ENST00000254950 SNX25Q9H3E2 840 aa12.49□□□□□ -0.41
VPS4A-201ENST00000254950 A0A1W2PQJ5 194 aa12.49□□□□□ -0.41
VPS4A-201ENST00000254950 KPNA6O60684 536 aa12.49□□□□□ -0.41
VPS4A-201ENST00000254950 ZNF286BP0CG31 522 aa12.49□□□□□ -0.41
VPS4A-201ENST00000254950 ACTN1P12814 892 aa12.49□□□□□ -0.41
VPS4A-201ENST00000254950 KCNA2P16389 499 aa12.49□□□□□ -0.41
VPS4A-201ENST00000254950 ICAM3P32942 547 aa12.49□□□□□ -0.41
VPS4A-201ENST00000254950 CYP2C19P33261 490 aa12.49□□□□□ -0.41
VPS4A-201ENST00000254950 SOX5P35711 763 aa12.49□□□□□ -0.41
VPS4A-201ENST00000254950 TMEM62Q0P6H9 643 aa12.49□□□□□ -0.41
VPS4A-201ENST00000254950 RPGRIP1Q96KN7 1286 aa12.49□□□□□ -0.41
VPS4A-201ENST00000254950 TMEM8AQ9HCN3 771 aa12.49□□□□□ -0.41
VPS4A-201ENST00000254950 DDX41Q9UJV9 622 aaKnown RBP12.49□□□□□ -0.41
VPS4A-201ENST00000254950 SOWAHBA6NEL2 793 aa12.48□□□□□ -0.41
VPS4A-201ENST00000254950 TOM1L1O75674 476 aa12.48□□□□□ -0.41
VPS4A-201ENST00000254950 RNF180Q86T96 592 aa12.48□□□□□ -0.41
VPS4A-201ENST00000254950 TLK2Q86UE8 772 aa12.48□□□□□ -0.41
VPS4A-201ENST00000254950 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.48□□□□□ -0.41
VPS4A-201ENST00000254950 CHP1Q99653 195 aa12.48□□□□□ -0.41
VPS4A-201ENST00000254950 STK33Q9BYT3 514 aa12.48□□□□□ -0.41
VPS4A-201ENST00000254950 CENPHQ9H3R5 247 aa12.48□□□□□ -0.41
VPS4A-201ENST00000254950 MYO1FO00160 1098 aa12.48□□□□□ -0.41
VPS4A-201ENST00000254950 OPLAHO14841 1288 aa12.48□□□□□ -0.41
VPS4A-201ENST00000254950 OGTO15294 1046 aa12.48□□□□□ -0.41
VPS4A-201ENST00000254950 LGALS2P05162 132 aa12.48□□□□□ -0.41
VPS4A-201ENST00000254950 CLUL1Q15846 466 aa12.48□□□□□ -0.41
VPS4A-201ENST00000254950 CBWD2Q8IUF1 395 aa12.48□□□□□ -0.41
VPS4A-201ENST00000254950 GLIS3Q8NEA6 775 aa12.48□□□□□ -0.41
VPS4A-201ENST00000254950 CCDC26Q8TAB7 109 aa12.48□□□□□ -0.41
VPS4A-201ENST00000254950 RAB20Q9NX57 234 aa12.48□□□□□ -0.41
VPS4A-201ENST00000254950 C17orf102A2RUQ5 167 aa12.48□□□□□ -0.41
VPS4A-201ENST00000254950 KCNK3O14649 394 aa12.48□□□□□ -0.41
VPS4A-201ENST00000254950 TERF1P54274 439 aa12.48□□□□□ -0.41
VPS4A-201ENST00000254950 ARSHQ5FYA8 562 aa12.48□□□□□ -0.41
VPS4A-201ENST00000254950 FIGNQ5HY92 759 aa12.48□□□□□ -0.41
VPS4A-201ENST00000254950 ABRAQ8N0Z2 381 aa12.48□□□□□ -0.41
VPS4A-201ENST00000254950 GLT1D1Q96MS3 346 aa12.48□□□□□ -0.41
VPS4A-201ENST00000254950 MED10Q9BTT4 135 aa12.48□□□□□ -0.41
VPS4A-201ENST00000254950 CDC23Q9UJX2 597 aa12.48□□□□□ -0.41
VPS4A-201ENST00000254950 SSU72P8A0A1W2PR75 194 aa12.47□□□□□ -0.41
VPS4A-201ENST00000254950 ARHGEF37A1IGU5 675 aa12.47□□□□□ -0.41
VPS4A-201ENST00000254950 TRPA1O75762 1119 aa12.47□□□□□ -0.41
VPS4A-201ENST00000254950 EHHADHQ08426 723 aa12.47□□□□□ -0.41
VPS4A-201ENST00000254950 LAMTOR4Q0VGL1 99 aa12.47□□□□□ -0.41
VPS4A-201ENST00000254950 MTF1Q14872 753 aa12.47□□□□□ -0.41
VPS4A-201ENST00000254950 UGCGQ16739 394 aa12.47□□□□□ -0.41
VPS4A-201ENST00000254950 COBLL1Q53SF7 1204 aa12.47□□□□□ -0.41
VPS4A-201ENST00000254950 TMEM270Q6UE05 265 aa12.47□□□□□ -0.41
VPS4A-201ENST00000254950 ABHD15Q6UXT9 468 aa12.47□□□□□ -0.41
VPS4A-201ENST00000254950 KIF12Q96FN5 646 aa12.47□□□□□ -0.41
VPS4A-201ENST00000254950 LRFN2Q9ULH4 789 aa12.47□□□□□ -0.41
VPS4A-201ENST00000254950 FHOD1Q9Y613 1164 aa12.47□□□□□ -0.41
VPS4A-201ENST00000254950 RPTORQ8N122 1335 aa12.47□□□□□ -0.41
VPS4A-201ENST00000254950 LRRC10BA6NIK2 292 aa12.47□□□□□ -0.41
VPS4A-201ENST00000254950 FARP2O94887 1054 aaPredicted RBP12.47□□□□□ -0.41
VPS4A-201ENST00000254950 KLK7P49862 253 aa12.47□□□□□ -0.41
VPS4A-201ENST00000254950 CASP5P51878 434 aa12.47□□□□□ -0.41
VPS4A-201ENST00000254950 TAF12Q16514 161 aa12.47□□□□□ -0.41
VPS4A-201ENST00000254950 LDLRAD1Q5T700 205 aa12.47□□□□□ -0.41
VPS4A-201ENST00000254950 C8orf74Q6P047 294 aa12.47□□□□□ -0.41
VPS4A-201ENST00000254950 SLC45A1Q9Y2W3 748 aa12.47□□□□□ -0.41
VPS4A-201ENST00000254950 KBTBD13C9JR72 458 aa12.47□□□□□ -0.41
VPS4A-201ENST00000254950 CTSHP09668 335 aa12.47□□□□□ -0.41
VPS4A-201ENST00000254950 RNASELQ05823 741 aaKnown RBP12.47□□□□□ -0.41
VPS4A-201ENST00000254950 MESDQ14696 234 aa12.47□□□□□ -0.41
VPS4A-201ENST00000254950 SPOUT1Q5T280 376 aaKnown RBP12.47□□□□□ -0.41
VPS4A-201ENST00000254950 KLHDC7AQ5VTJ3 777 aa12.47□□□□□ -0.41
VPS4A-201ENST00000254950 ANO5Q75V66 913 aa12.47□□□□□ -0.41
VPS4A-201ENST00000254950 PLPPR4Q7Z2D5 763 aa12.47□□□□□ -0.41
VPS4A-201ENST00000254950 CCDC155Q8N6L0 562 aa12.47□□□□□ -0.41
VPS4A-201ENST00000254950 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.47□□□□□ -0.41
VPS4A-201ENST00000254950 TRAPPC12Q8WVT3 735 aa12.47□□□□□ -0.41
VPS4A-201ENST00000254950 APBA2Q99767 749 aa12.47□□□□□ -0.41
VPS4A-201ENST00000254950 PDE11AQ9HCR9 933 aa12.47□□□□□ -0.41
VPS4A-201ENST00000254950 DOCK2Q92608 1830 aa12.47□□□□□ -0.41
VPS4A-201ENST00000254950 ADCY3O60266 1144 aa12.47□□□□□ -0.41
VPS4A-201ENST00000254950 IL18RAPO95256 599 aa12.47□□□□□ -0.41
VPS4A-201ENST00000254950 GFPT1Q06210 699 aaPredicted RBP12.47□□□□□ -0.41
VPS4A-201ENST00000254950 NCOA4Q13772 614 aa12.47□□□□□ -0.41
VPS4A-201ENST00000254950 GRIK4Q16099 956 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms