RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 DBR1Q9UK59 544 aaKnown RBP20.16■□□□□ 0.82
CPSF3-201ENST00000238112 PNMA2Q9UL42 364 aa20.16■□□□□ 0.82
CPSF3-201ENST00000238112 SGPL1O95470 568 aa20.15■□□□□ 0.82
CPSF3-201ENST00000238112 CTNNA2P26232 953 aa20.15■□□□□ 0.82
CPSF3-201ENST00000238112 RARRES1P49788 294 aa20.15■□□□□ 0.82
CPSF3-201ENST00000238112 ACTN3Q08043 901 aaPredicted RBP20.15■□□□□ 0.82
CPSF3-201ENST00000238112 CPLX4Q7Z7G2 160 aa20.15■□□□□ 0.82
CPSF3-201ENST00000238112 CACNA2D3Q8IZS8 1091 aa20.15■□□□□ 0.82
CPSF3-201ENST00000238112 FLAD1Q8NFF5 587 aa20.15■□□□□ 0.82
CPSF3-201ENST00000238112 EPS8L1Q8TE68 723 aa20.15■□□□□ 0.82
CPSF3-201ENST00000238112 KAT5Q92993 513 aa20.15■□□□□ 0.82
CPSF3-201ENST00000238112 EPB41L4BQ9H329 900 aa20.15■□□□□ 0.82
CPSF3-201ENST00000238112 CHORDC1Q9UHD1 332 aaPredicted RBP20.15■□□□□ 0.82
CPSF3-201ENST00000238112 CCPG1Q9ULG6 757 aa20.15■□□□□ 0.82
CPSF3-201ENST00000238112 ZNF646O15015 1829 aaPredicted RBP20.15■□□□□ 0.82
CPSF3-201ENST00000238112 SPDYE2BA6NHP3 402 aa20.15■□□□□ 0.82
CPSF3-201ENST00000238112 SPDYE6P0CI01 402 aa20.15■□□□□ 0.82
CPSF3-201ENST00000238112 PLCB4Q15147 1175 aa20.15■□□□□ 0.82
CPSF3-201ENST00000238112 C1orf220Q5T0J3 134 aa20.15■□□□□ 0.82
CPSF3-201ENST00000238112 KCNV1Q6PIU1 500 aa20.15■□□□□ 0.82
CPSF3-201ENST00000238112 CCDC137Q6PK04 289 aaKnown RBP20.15■□□□□ 0.82
CPSF3-201ENST00000238112 HAUS6Q7Z4H7 955 aa20.15■□□□□ 0.82
CPSF3-201ENST00000238112 FAM151AQ8WW52 585 aa20.15■□□□□ 0.82
CPSF3-201ENST00000238112 SEC16BQ96JE7 1060 aa20.15■□□□□ 0.82
CPSF3-201ENST00000238112 PCDHB18PQ96TA0 734 aa20.15■□□□□ 0.82
CPSF3-201ENST00000238112 GRHL1Q9NZI5 618 aa20.15■□□□□ 0.82
CPSF3-201ENST00000238112 FRMD4AQ9P2Q2 1039 aaPredicted RBP20.15■□□□□ 0.82
CPSF3-201ENST00000238112 MTUS1Q9ULD2 1270 aa20.15■□□□□ 0.82
CPSF3-201ENST00000238112 LOXHD1Q8IVV2 1947 aa20.14■□□□□ 0.82
CPSF3-201ENST00000238112 GOLGA6L7A0A1B0GV03 622 aa20.14■□□□□ 0.82
CPSF3-201ENST00000238112 C5orf60A6NFR6 353 aa20.14■□□□□ 0.82
CPSF3-201ENST00000238112 MAPK13O15264 365 aa20.14■□□□□ 0.82
CPSF3-201ENST00000238112 ATMINO43313 823 aaPredicted RBP20.14■□□□□ 0.82
CPSF3-201ENST00000238112 SPOPO43791 374 aa20.14■□□□□ 0.82
CPSF3-201ENST00000238112 GZMAP12544 262 aa20.14■□□□□ 0.82
CPSF3-201ENST00000238112 HSD17B4P51659 736 aa20.14■□□□□ 0.82
CPSF3-201ENST00000238112 GKAP1Q5VSY0 366 aaPredicted RBP20.14■□□□□ 0.82
CPSF3-201ENST00000238112 NOP9Q86U38 636 aaKnown RBP20.14■□□□□ 0.82
CPSF3-201ENST00000238112 PPM1KQ8N3J5 372 aa20.14■□□□□ 0.82
CPSF3-201ENST00000238112 PGM2Q96G03 612 aa20.14■□□□□ 0.82
CPSF3-201ENST00000238112 TMEM117Q9H0C3 514 aa20.14■□□□□ 0.82
CPSF3-201ENST00000238112 UTP3Q9NQZ2 479 aaKnown RBP eCLIP20.14■□□□□ 0.826e-9■■■■■ 134.6
CPSF3-201ENST00000238112 TLDC2A0PJX2 215 aa20.14■□□□□ 0.81
CPSF3-201ENST00000238112 BACH1O14867 736 aa20.14■□□□□ 0.81
CPSF3-201ENST00000238112 PPIP5K2O43314 1243 aa20.14■□□□□ 0.81
CPSF3-201ENST00000238112 MTA2O94776 668 aa20.14■□□□□ 0.81
CPSF3-201ENST00000238112 RPL21P46778 160 aaKnown RBP20.14■□□□□ 0.81
CPSF3-201ENST00000238112 QARSP47897 775 aaKnown RBP20.14■□□□□ 0.81
CPSF3-201ENST00000238112 PEX5P50542 639 aa20.14■□□□□ 0.81
CPSF3-201ENST00000238112 RASA3Q14644 834 aa20.14■□□□□ 0.81
CPSF3-201ENST00000238112 CCDC13Q8IYE1 715 aa20.14■□□□□ 0.81
CPSF3-201ENST00000238112 FAM71AQ8IYT1 594 aa20.14■□□□□ 0.81
CPSF3-201ENST00000238112 MDM1Q8TC05 714 aa20.14■□□□□ 0.81
CPSF3-201ENST00000238112 RNF25Q96BH1 459 aaPredicted RBP20.14■□□□□ 0.81
CPSF3-201ENST00000238112 AGBL1Q96MI9 1066 aa20.14■□□□□ 0.81
CPSF3-201ENST00000238112 IWS1Q96ST2 819 aa20.14■□□□□ 0.81
CPSF3-201ENST00000238112 TAOK3Q9H2K8 898 aa20.14■□□□□ 0.81
CPSF3-201ENST00000238112 ACTR5Q9H9F9 607 aaPredicted RBP20.14■□□□□ 0.81
CPSF3-201ENST00000238112 NOCTQ9UK39 431 aaKnown RBP20.14■□□□□ 0.81
CPSF3-201ENST00000238112 YDJCA8MPS7 323 aa20.13■□□□□ 0.81
CPSF3-201ENST00000238112 RGS16O15492 202 aaPredicted RBP20.13■□□□□ 0.81
CPSF3-201ENST00000238112 CHRNB2P17787 502 aa20.13■□□□□ 0.81
CPSF3-201ENST00000238112 MFAP3P55082 362 aa20.13■□□□□ 0.81
CPSF3-201ENST00000238112 SNRPFP62306 86 aaKnown RBP20.13■□□□□ 0.81
CPSF3-201ENST00000238112 GTF2BQ00403 316 aa20.13■□□□□ 0.81
CPSF3-201ENST00000238112 SLC29A2Q14542 456 aa20.13■□□□□ 0.81
CPSF3-201ENST00000238112 TTC27Q6P3X3 843 aa20.13■□□□□ 0.81
CPSF3-201ENST00000238112 CCDC105Q8IYK2 499 aa20.13■□□□□ 0.81
CPSF3-201ENST00000238112 ZSWIM2Q8NEG5 633 aa20.13■□□□□ 0.81
CPSF3-201ENST00000238112 ZNF564Q8TBZ8 553 aaPredicted RBP20.13■□□□□ 0.81
CPSF3-201ENST00000238112 PLEKHO2Q8TD55 490 aa20.13■□□□□ 0.81
CPSF3-201ENST00000238112 TATDN2Q93075 761 aa20.13■□□□□ 0.81
CPSF3-201ENST00000238112 CENPTQ96BT3 561 aa20.13■□□□□ 0.81
CPSF3-201ENST00000238112 RUNDC3BQ96NL0 473 aa20.13■□□□□ 0.81
CPSF3-201ENST00000238112 XPO6Q96QU8 1125 aaKnown RBP20.13■□□□□ 0.81
CPSF3-201ENST00000238112 SELENOSQ9BQE4 189 aa20.13■□□□□ 0.81
CPSF3-201ENST00000238112 NUP85Q9BW27 656 aa20.13■□□□□ 0.81
CPSF3-201ENST00000238112 ZNF70Q9UC06 446 aaPredicted RBP20.13■□□□□ 0.81
CPSF3-201ENST00000238112 TRPC6Q9Y210 931 aa20.13■□□□□ 0.81
CPSF3-201ENST00000238112 RPTORQ8N122 1335 aa20.13■□□□□ 0.81
CPSF3-201ENST00000238112 SMIM23A6NLE4 172 aa20.13■□□□□ 0.81
CPSF3-201ENST00000238112 CYP26A1O43174 497 aa20.13■□□□□ 0.81
CPSF3-201ENST00000238112 ICAM1P05362 532 aa20.13■□□□□ 0.81
CPSF3-201ENST00000238112 PYGMP11217 842 aa20.13■□□□□ 0.81
CPSF3-201ENST00000238112 MNAT1P51948 309 aa20.13■□□□□ 0.81
CPSF3-201ENST00000238112 MAP2K1Q02750 393 aaPredicted RBP20.13■□□□□ 0.81
CPSF3-201ENST00000238112 ERMARDQ5T6L9 678 aa20.13■□□□□ 0.81
CPSF3-201ENST00000238112 NIPA1Q7RTP0 329 aa20.13■□□□□ 0.81
CPSF3-201ENST00000238112 CROCCP2Q86T23 111 aa20.13■□□□□ 0.81
CPSF3-201ENST00000238112 CNKSR1Q969H4 720 aa20.13■□□□□ 0.81
CPSF3-201ENST00000238112 CHMP6Q96FZ7 201 aa20.13■□□□□ 0.81
CPSF3-201ENST00000238112 DEFB129Q9H1M3 183 aa20.13■□□□□ 0.81
CPSF3-201ENST00000238112 GOLGA8IPA6NC78 632 aa20.12■□□□□ 0.81
CPSF3-201ENST00000238112 GOLGA8JA6NMD2 632 aa20.12■□□□□ 0.81
CPSF3-201ENST00000238112 PHF20L1A8MW92 1017 aa20.12■□□□□ 0.81
CPSF3-201ENST00000238112 PMM2O15305 246 aa20.12■□□□□ 0.81
CPSF3-201ENST00000238112 SLC16A4O15374 487 aa20.12■□□□□ 0.81
CPSF3-201ENST00000238112 DHX15O43143 795 aaKnown RBP20.12■□□□□ 0.81
CPSF3-201ENST00000238112 CTNND1O60716 968 aaKnown RBP20.12■□□□□ 0.81
CPSF3-201ENST00000238112 CHRNA5P30532 468 aa20.12■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms