RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 STK17AQ9UEE5 414 aa10.89□□□□□ -0.67
CLN3-261ENST00000637686 HOOK1Q9UJC3 728 aaKnown RBP10.89□□□□□ -0.67
CLN3-261ENST00000637686 ADGRA3Q8IWK6 1321 aa10.88□□□□□ -0.67
CLN3-261ENST00000637686 A0A1B0GVL5 298 aa10.88□□□□□ -0.67
CLN3-261ENST00000637686 EPOPA6NHQ4 379 aa10.88□□□□□ -0.67
CLN3-261ENST00000637686 SFI1A8K8P3 1242 aa10.88□□□□□ -0.67
CLN3-261ENST00000637686 RFXAPO00287 272 aa10.88□□□□□ -0.67
CLN3-261ENST00000637686 TSPAN1O60635 241 aa10.88□□□□□ -0.67
CLN3-261ENST00000637686 NR1I2O75469 434 aa10.88□□□□□ -0.67
CLN3-261ENST00000637686 ZNF202O95125 648 aa10.88□□□□□ -0.67
CLN3-261ENST00000637686 FGFR1P11362 822 aa10.88□□□□□ -0.67
CLN3-261ENST00000637686 HOXA11P31270 313 aaPredicted RBP10.88□□□□□ -0.67
CLN3-261ENST00000637686 PEX3P56589 373 aa10.88□□□□□ -0.67
CLN3-261ENST00000637686 ERVK-21P61565 698 aa10.88□□□□□ -0.67
CLN3-261ENST00000637686 CACNB1Q02641 598 aaPredicted RBP10.88□□□□□ -0.67
CLN3-261ENST00000637686 NCBP1Q09161 790 aaKnown RBP10.88□□□□□ -0.67
CLN3-261ENST00000637686 MAPK7Q13164 816 aa10.88□□□□□ -0.67
CLN3-261ENST00000637686 BTG3Q14201 252 aaPredicted RBP10.88□□□□□ -0.67
CLN3-261ENST00000637686 PPP2R5AQ15172 486 aa10.88□□□□□ -0.67
CLN3-261ENST00000637686 PCBP1Q15365 356 aaKnown RBP eCLIP10.88□□□□□ -0.67
CLN3-261ENST00000637686 AMHR2Q16671 573 aa10.88□□□□□ -0.67
CLN3-261ENST00000637686 PAN2Q504Q3 1202 aaKnown RBP10.88□□□□□ -0.67
CLN3-261ENST00000637686 ARSHQ5FYA8 562 aa10.88□□□□□ -0.67
CLN3-261ENST00000637686 RRAGBQ5VZM2 374 aa10.88□□□□□ -0.67
CLN3-261ENST00000637686 CDCA2Q69YH5 1023 aaPredicted RBP10.88□□□□□ -0.67
CLN3-261ENST00000637686 GPBP1Q86WP2 473 aa10.88□□□□□ -0.67
CLN3-261ENST00000637686 ZBTB8OSQ8IWT0 167 aa10.88□□□□□ -0.67
CLN3-261ENST00000637686 DAW1Q8N136 415 aa10.88□□□□□ -0.67
CLN3-261ENST00000637686 FIBCD1Q8N539 461 aa10.88□□□□□ -0.67
CLN3-261ENST00000637686 RNF169Q8NCN4 708 aa10.88□□□□□ -0.67
CLN3-261ENST00000637686 RAD54LQ92698 747 aa10.88□□□□□ -0.67
CLN3-261ENST00000637686 DRC1Q96MC2 740 aa10.88□□□□□ -0.67
CLN3-261ENST00000637686 TGS1Q96RS0 853 aaKnown RBP10.88□□□□□ -0.67
CLN3-261ENST00000637686 C17orf80Q9BSJ5 609 aa10.88□□□□□ -0.67
CLN3-261ENST00000637686 TIPINQ9BVW5 301 aa10.88□□□□□ -0.67
CLN3-261ENST00000637686 C2orf40Q9H1Z8 148 aa10.88□□□□□ -0.67
CLN3-261ENST00000637686 CDH23Q9H251 3354 aa10.88□□□□□ -0.67
CLN3-261ENST00000637686 CLSTN2Q9H4D0 955 aa10.88□□□□□ -0.67
CLN3-261ENST00000637686 ELAC1Q9H777 363 aaKnown RBP10.88□□□□□ -0.67
CLN3-261ENST00000637686 FAM105AQ9NUU6 356 aa10.88□□□□□ -0.67
CLN3-261ENST00000637686 RNF216Q9NWF9 866 aaPredicted RBP10.88□□□□□ -0.67
CLN3-261ENST00000637686 MTUS1Q9ULD2 1270 aa10.88□□□□□ -0.67
CLN3-261ENST00000637686 CHD9Q3L8U1 2897 aa10.87□□□□□ -0.67
CLN3-261ENST00000637686 A0A087X0B3 334 aa10.87□□□□□ -0.67
CLN3-261ENST00000637686 CCDC169A6NNP5 214 aa10.87□□□□□ -0.67
CLN3-261ENST00000637686 TBKBP1A7MCY6 615 aa10.87□□□□□ -0.67
CLN3-261ENST00000637686 B4GALT5O43286 388 aa10.87□□□□□ -0.67
CLN3-261ENST00000637686 EOMESO95936 686 aa10.87□□□□□ -0.67
CLN3-261ENST00000637686 SLFN14P0C7P3 912 aa10.87□□□□□ -0.67
CLN3-261ENST00000637686 SKIP12755 728 aa10.87□□□□□ -0.67
CLN3-261ENST00000637686 ATF7P17544 494 aaPredicted RBP10.87□□□□□ -0.67
CLN3-261ENST00000637686 ARF4P18085 180 aaPredicted RBP10.87□□□□□ -0.67
CLN3-261ENST00000637686 AXLP30530 894 aa10.87□□□□□ -0.67
CLN3-261ENST00000637686 NPTX2P47972 431 aa10.87□□□□□ -0.67
CLN3-261ENST00000637686 DMP1Q13316 513 aaPredicted RBP10.87□□□□□ -0.67
CLN3-261ENST00000637686 E2F4Q16254 413 aa10.87□□□□□ -0.67
CLN3-261ENST00000637686 LONRF3Q496Y0 759 aa10.87□□□□□ -0.67
CLN3-261ENST00000637686 UBXN11Q5T124 520 aa10.87□□□□□ -0.67
CLN3-261ENST00000637686 KRBA2Q6ZNG9 492 aa10.87□□□□□ -0.67
CLN3-261ENST00000637686 ZNF598Q86UK7 904 aaKnown RBP10.87□□□□□ -0.67
CLN3-261ENST00000637686 CMTR2Q8IYT2 770 aaKnown RBP10.87□□□□□ -0.67
CLN3-261ENST00000637686 LARP4BQ92615 738 aaKnown RBP10.87□□□□□ -0.67
CLN3-261ENST00000637686 TRAIPQ9BWF2 469 aa10.87□□□□□ -0.67
CLN3-261ENST00000637686 NUP62CLQ9H1M0 184 aa10.87□□□□□ -0.67
CLN3-261ENST00000637686 FZD8Q9H461 694 aa10.87□□□□□ -0.67
CLN3-261ENST00000637686 RNF19AQ9NV58 838 aa10.87□□□□□ -0.67
CLN3-261ENST00000637686 PRMT7Q9NVM4 692 aaPredicted RBP10.87□□□□□ -0.67
CLN3-261ENST00000637686 KCND2Q9NZV8 630 aa10.87□□□□□ -0.67
CLN3-261ENST00000637686 USP20Q9Y2K6 914 aa10.87□□□□□ -0.67
CLN3-261ENST00000637686 PCDHB2Q9Y5E7 798 aa10.87□□□□□ -0.67
CLN3-261ENST00000637686 COL4A6Q14031 1691 aa10.87□□□□□ -0.67
CLN3-261ENST00000637686 TTLL13PA6NNM8 815 aa10.86□□□□□ -0.67
CLN3-261ENST00000637686 POLR2DO15514 142 aaKnown RBP10.86□□□□□ -0.67
CLN3-261ENST00000637686 ACTN4O43707 911 aaKnown RBP10.86□□□□□ -0.67
CLN3-261ENST00000637686 PRKCBP05771 671 aa10.86□□□□□ -0.67
CLN3-261ENST00000637686 LINC00271P0C7V0 271 aa10.86□□□□□ -0.67
CLN3-261ENST00000637686 PLS3P13797 630 aa10.86□□□□□ -0.67
CLN3-261ENST00000637686 FOSL2P15408 326 aa10.86□□□□□ -0.67
CLN3-261ENST00000637686 IGFBP4P22692 258 aa10.86□□□□□ -0.67
CLN3-261ENST00000637686 STAT6P42226 847 aa10.86□□□□□ -0.67
CLN3-261ENST00000637686 GIT2Q14161 759 aa10.86□□□□□ -0.67
CLN3-261ENST00000637686 ADGRE1Q14246 886 aa10.86□□□□□ -0.67
CLN3-261ENST00000637686 MAPK6Q16659 721 aa10.86□□□□□ -0.67
CLN3-261ENST00000637686 EPC2Q52LR7 807 aa10.86□□□□□ -0.67
CLN3-261ENST00000637686 NAALADL2Q58DX5 795 aa10.86□□□□□ -0.67
CLN3-261ENST00000637686 CNNM4Q6P4Q7 775 aa10.86□□□□□ -0.67
CLN3-261ENST00000637686 NOTUMQ6P988 496 aa10.86□□□□□ -0.67
CLN3-261ENST00000637686 PPP4R3CPQ6ZMV5 832 aa10.86□□□□□ -0.67
CLN3-261ENST00000637686 CDR2LQ86X02 465 aaPredicted RBP10.86□□□□□ -0.67
CLN3-261ENST00000637686 TMEM192Q8IY95 271 aa10.86□□□□□ -0.67
CLN3-261ENST00000637686 PDILTQ8N807 584 aa10.86□□□□□ -0.67
CLN3-261ENST00000637686 LPPQ93052 612 aa10.86□□□□□ -0.67
CLN3-261ENST00000637686 CASD1Q96PB1 797 aa10.86□□□□□ -0.67
CLN3-261ENST00000637686 GAS2L1Q99501 681 aaPredicted RBP10.86□□□□□ -0.67
CLN3-261ENST00000637686 REEP2Q9BRK0 252 aa10.86□□□□□ -0.67
CLN3-261ENST00000637686 EIF2AQ9BY44 585 aaKnown RBP10.86□□□□□ -0.67
CLN3-261ENST00000637686 LRRC27Q9C0I9 530 aa10.86□□□□□ -0.67
CLN3-261ENST00000637686 CCDC113Q9H0I3 377 aa10.86□□□□□ -0.67
CLN3-261ENST00000637686 KMT5AQ9NQR1 393 aa10.86□□□□□ -0.67
CLN3-261ENST00000637686 TMEM63CQ9P1W3 806 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms