RNA–Protein interactions for RNA: ENST00000623985.3

LINC00643-206, long intergenic non-protein coding RNA 643, humanhuman

TSL 1 (best)

Gene LINC00643, Length 864 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-206ENST00000623985 TBX10O75333 385 aa16.42■□□□□ 0.22
LINC00643-206ENST00000623985 NCLP19338 710 aaKnown RBP16.42■□□□□ 0.22
LINC00643-206ENST00000623985 GTF2F1P35269 517 aaKnown RBP eCLIP16.42■□□□□ 0.22
LINC00643-206ENST00000623985 PBX3P40426 434 aa16.42■□□□□ 0.22
LINC00643-206ENST00000623985 ATP2C1P98194 919 aaPredicted RBP16.42■□□□□ 0.22
LINC00643-206ENST00000623985 ECM1Q16610 540 aa16.42■□□□□ 0.22
LINC00643-206ENST00000623985 AMHR2Q16671 573 aa16.42■□□□□ 0.22
LINC00643-206ENST00000623985 LONRF3Q496Y0 759 aa16.42■□□□□ 0.22
LINC00643-206ENST00000623985 NOMO2Q5JPE7 1267 aa16.42■□□□□ 0.22
LINC00643-206ENST00000623985 PTCRAQ6ISU1 281 aaPredicted RBP16.42■□□□□ 0.22
LINC00643-206ENST00000623985 PADI6Q6TGC4 694 aa16.42■□□□□ 0.22
LINC00643-206ENST00000623985 DTHD1Q6ZMT9 781 aa16.42■□□□□ 0.22
LINC00643-206ENST00000623985 AGMOQ6ZNB7 445 aa16.42■□□□□ 0.22
LINC00643-206ENST00000623985 MRPL10Q7Z7H8 261 aaKnown RBP16.42■□□□□ 0.22
LINC00643-206ENST00000623985 SLC39A11Q8N1S5 342 aa16.42■□□□□ 0.22
LINC00643-206ENST00000623985 EFHBQ8N7U6 833 aa16.42■□□□□ 0.22
LINC00643-206ENST00000623985 URGCPQ8TCY9 931 aa16.42■□□□□ 0.22
LINC00643-206ENST00000623985 RSAD1Q9HA92 442 aa16.42■□□□□ 0.22
LINC00643-206ENST00000623985 TBC1D13Q9NVG8 400 aa16.42■□□□□ 0.22
LINC00643-206ENST00000623985 SPG21Q9NZD8 308 aa16.42■□□□□ 0.22
LINC00643-206ENST00000623985 PUF60Q9UHX1 559 aaKnown RBP16.42■□□□□ 0.22
LINC00643-206ENST00000623985 FAM50BQ9Y247 325 aa16.42■□□□□ 0.22
LINC00643-206ENST00000623985 ZC3H11AO75152 810 aaKnown RBP eCLIP16.41■□□□□ 0.22
LINC00643-206ENST00000623985 OFD1O75665 1012 aa16.41■□□□□ 0.22
LINC00643-206ENST00000623985 ARF4P18085 180 aaPredicted RBP16.41■□□□□ 0.22
LINC00643-206ENST00000623985 CYP11B2P19099 503 aa16.41■□□□□ 0.22
LINC00643-206ENST00000623985 LTBRP36941 435 aa16.41■□□□□ 0.22
LINC00643-206ENST00000623985 ALDH7A1P49419 539 aaKnown RBP16.41■□□□□ 0.22
LINC00643-206ENST00000623985 BCAR1P56945 870 aa16.41■□□□□ 0.22
LINC00643-206ENST00000623985 KRT17Q04695 432 aa16.41■□□□□ 0.22
LINC00643-206ENST00000623985 RNASELQ05823 741 aaKnown RBP16.41■□□□□ 0.22
LINC00643-206ENST00000623985 KRT79Q5XKE5 535 aa16.41■□□□□ 0.22
LINC00643-206ENST00000623985 LARP1BQ659C4 914 aaKnown RBP16.41■□□□□ 0.22
LINC00643-206ENST00000623985 PPP4R3CPQ6ZMV5 832 aa16.41■□□□□ 0.22
LINC00643-206ENST00000623985 MAEAQ7L5Y9 396 aa16.41■□□□□ 0.22
LINC00643-206ENST00000623985 ZBTB8OSQ8IWT0 167 aa16.41■□□□□ 0.22
LINC00643-206ENST00000623985 CPB2Q96IY4 423 aa16.41■□□□□ 0.22
LINC00643-206ENST00000623985 PRIMPOLQ96LW4 560 aa16.41■□□□□ 0.22
LINC00643-206ENST00000623985 CDCA3Q99618 268 aaPredicted RBP16.41■□□□□ 0.22
LINC00643-206ENST00000623985 CSRNP2Q9H175 543 aa16.41■□□□□ 0.22
LINC00643-206ENST00000623985 C2orf40Q9H1Z8 148 aa16.41■□□□□ 0.22
LINC00643-206ENST00000623985 UBN1Q9NPG3 1134 aa16.41■□□□□ 0.22
LINC00643-206ENST00000623985 ENTPD7Q9NQZ7 604 aa16.41■□□□□ 0.22
LINC00643-206ENST00000623985 DDX19AQ9NUU7 478 aaKnown RBP16.41■□□□□ 0.22
LINC00643-206ENST00000623985 KIAA1024Q9UPX6 916 aa16.41■□□□□ 0.22
LINC00643-206ENST00000623985 INPP5FQ9Y2H2 1132 aa16.41■□□□□ 0.22
LINC00643-206ENST00000623985 PCDHGC5Q9Y5F6 944 aa16.41■□□□□ 0.22
LINC00643-206ENST00000623985 VWA8A3KMH1 1905 aa16.41■□□□□ 0.22
LINC00643-206ENST00000623985 ZMYM2Q9UBW7 1377 aa16.4■□□□□ 0.22
LINC00643-206ENST00000623985 GRXCR2A6NFK2 248 aa16.4■□□□□ 0.22
LINC00643-206ENST00000623985 IL9P15248 144 aa16.4■□□□□ 0.22
LINC00643-206ENST00000623985 NAMPTP43490 491 aa16.4■□□□□ 0.22
LINC00643-206ENST00000623985 NRIP1P48552 1158 aa16.4■□□□□ 0.22
LINC00643-206ENST00000623985 NDUFV1P49821 464 aa16.4■□□□□ 0.22
LINC00643-206ENST00000623985 ERVFC1P60507 584 aa16.4■□□□□ 0.22
LINC00643-206ENST00000623985 ADAM15Q13444 863 aa16.4■□□□□ 0.22
LINC00643-206ENST00000623985 PPP2R5AQ15172 486 aa16.4■□□□□ 0.22
LINC00643-206ENST00000623985 IL17AQ16552 155 aa16.4■□□□□ 0.22
LINC00643-206ENST00000623985 PLPP4Q5VZY2 271 aa16.4■□□□□ 0.22
LINC00643-206ENST00000623985 BRAPQ7Z569 592 aa16.4■□□□□ 0.22
LINC00643-206ENST00000623985 SMG8Q8ND04 991 aaKnown RBP16.4■□□□□ 0.22
LINC00643-206ENST00000623985 MICAL1Q8TDZ2 1067 aa16.4■□□□□ 0.22
LINC00643-206ENST00000623985 TMEM169Q96HH4 297 aa16.4■□□□□ 0.22
LINC00643-206ENST00000623985 TCF25Q9BQ70 676 aa16.4■□□□□ 0.22
LINC00643-206ENST00000623985 EIF2AQ9BY44 585 aaKnown RBP16.4■□□□□ 0.22
LINC00643-206ENST00000623985 BHMT2Q9H2M3 363 aa16.4■□□□□ 0.22
LINC00643-206ENST00000623985 IGFLR1Q9H665 355 aa16.4■□□□□ 0.22
LINC00643-206ENST00000623985 NRDE2Q9H7Z3 1164 aa16.4■□□□□ 0.22
LINC00643-206ENST00000623985 PRMT7Q9NVM4 692 aaPredicted RBP16.4■□□□□ 0.22
LINC00643-206ENST00000623985 IPPQ9Y573 584 aa16.4■□□□□ 0.22
LINC00643-206ENST00000623985 PP2D1A8MPX8 630 aa16.39■□□□□ 0.21
LINC00643-206ENST00000623985 INPPL1O15357 1258 aa16.39■□□□□ 0.21
LINC00643-206ENST00000623985 LINC01565O15544 149 aa16.39■□□□□ 0.21
LINC00643-206ENST00000623985 GLP2RO95838 553 aa16.39■□□□□ 0.21
LINC00643-206ENST00000623985 ITGA4P13612 1032 aa16.39■□□□□ 0.21
LINC00643-206ENST00000623985 DLX2Q07687 328 aaPredicted RBP16.39■□□□□ 0.21
LINC00643-206ENST00000623985 DUSP6Q16828 381 aa16.39■□□□□ 0.21
LINC00643-206ENST00000623985 FAM187BQ17R55 369 aa16.39■□□□□ 0.21
LINC00643-206ENST00000623985 ARL6IP4Q66PJ3 421 aaKnown RBP16.39■□□□□ 0.21
LINC00643-206ENST00000623985 SLC27A1Q6PCB7 646 aa16.39■□□□□ 0.21
LINC00643-206ENST00000623985 HACE1Q8IYU2 909 aa16.39■□□□□ 0.21
LINC00643-206ENST00000623985 KIFAP3Q92845 792 aa16.39■□□□□ 0.21
LINC00643-206ENST00000623985 TRIM6Q9C030 488 aaPredicted RBP16.39■□□□□ 0.21
LINC00643-206ENST00000623985 TLE6Q9H808 572 aa16.39■□□□□ 0.21
LINC00643-206ENST00000623985 NGRNQ9NPE2 291 aaKnown RBP16.39■□□□□ 0.21
LINC00643-206ENST00000623985 KANSL3Q9P2N6 904 aa16.39■□□□□ 0.21
LINC00643-206ENST00000623985 ANK1P16157 1881 aa16.38■□□□□ 0.21
LINC00643-206ENST00000623985 B4GALT5O43286 388 aa16.38■□□□□ 0.21
LINC00643-206ENST00000623985 EYA4O95677 639 aa16.38■□□□□ 0.21
LINC00643-206ENST00000623985 PDCP20941 246 aa16.38■□□□□ 0.21
LINC00643-206ENST00000623985 SMAD4Q13485 552 aaKnown RBP16.38■□□□□ 0.21
LINC00643-206ENST00000623985 SMC1AQ14683 1233 aaKnown RBP16.38■□□□□ 0.21
LINC00643-206ENST00000623985 RBM23Q86U06 439 aaKnown RBP16.38■□□□□ 0.21
LINC00643-206ENST00000623985 FAM178BQ8IXR5 827 aa16.38■□□□□ 0.21
LINC00643-206ENST00000623985 BSNDQ8WZ55 320 aa16.38■□□□□ 0.21
LINC00643-206ENST00000623985 MSLNLQ96KJ4 702 aa16.38■□□□□ 0.21
LINC00643-206ENST00000623985 IFT74Q96LB3 600 aa16.38■□□□□ 0.21
LINC00643-206ENST00000623985 MMTAG2Q9BU76 263 aaKnown RBP16.38■□□□□ 0.21
LINC00643-206ENST00000623985 NT5C3AQ9H0P0 336 aa16.38■□□□□ 0.21
LINC00643-206ENST00000623985 FZD8Q9H461 694 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms