RNA–Protein interactions for RNA: ENST00000623219.3

LINC00643-205, long intergenic non-protein coding RNA 643, humanhuman

TSL 1 (best)

Gene LINC00643, Length 962 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-205ENST00000623219 NCLP19338 710 aaKnown RBP16.42■□□□□ 0.22
LINC00643-205ENST00000623219 GTF2F1P35269 517 aaKnown RBP eCLIP16.42■□□□□ 0.22
LINC00643-205ENST00000623219 PBX3P40426 434 aa16.42■□□□□ 0.22
LINC00643-205ENST00000623219 ATP2C1P98194 919 aaPredicted RBP16.42■□□□□ 0.22
LINC00643-205ENST00000623219 ECM1Q16610 540 aa16.42■□□□□ 0.22
LINC00643-205ENST00000623219 AMHR2Q16671 573 aa16.42■□□□□ 0.22
LINC00643-205ENST00000623219 LONRF3Q496Y0 759 aa16.42■□□□□ 0.22
LINC00643-205ENST00000623219 NOMO2Q5JPE7 1267 aa16.42■□□□□ 0.22
LINC00643-205ENST00000623219 PTCRAQ6ISU1 281 aaPredicted RBP16.42■□□□□ 0.22
LINC00643-205ENST00000623219 PADI6Q6TGC4 694 aa16.42■□□□□ 0.22
LINC00643-205ENST00000623219 DTHD1Q6ZMT9 781 aa16.42■□□□□ 0.22
LINC00643-205ENST00000623219 AGMOQ6ZNB7 445 aa16.42■□□□□ 0.22
LINC00643-205ENST00000623219 MRPL10Q7Z7H8 261 aaKnown RBP16.42■□□□□ 0.22
LINC00643-205ENST00000623219 SLC39A11Q8N1S5 342 aa16.42■□□□□ 0.22
LINC00643-205ENST00000623219 EFHBQ8N7U6 833 aa16.42■□□□□ 0.22
LINC00643-205ENST00000623219 URGCPQ8TCY9 931 aa16.42■□□□□ 0.22
LINC00643-205ENST00000623219 RSAD1Q9HA92 442 aa16.42■□□□□ 0.22
LINC00643-205ENST00000623219 TBC1D13Q9NVG8 400 aa16.42■□□□□ 0.22
LINC00643-205ENST00000623219 SPG21Q9NZD8 308 aa16.42■□□□□ 0.22
LINC00643-205ENST00000623219 PUF60Q9UHX1 559 aaKnown RBP16.42■□□□□ 0.22
LINC00643-205ENST00000623219 FAM50BQ9Y247 325 aa16.42■□□□□ 0.22
LINC00643-205ENST00000623219 ZC3H11AO75152 810 aaKnown RBP eCLIP16.41■□□□□ 0.22
LINC00643-205ENST00000623219 OFD1O75665 1012 aa16.41■□□□□ 0.22
LINC00643-205ENST00000623219 ARF4P18085 180 aaPredicted RBP16.41■□□□□ 0.22
LINC00643-205ENST00000623219 CYP11B2P19099 503 aa16.41■□□□□ 0.22
LINC00643-205ENST00000623219 LTBRP36941 435 aa16.41■□□□□ 0.22
LINC00643-205ENST00000623219 ALDH7A1P49419 539 aaKnown RBP16.41■□□□□ 0.22
LINC00643-205ENST00000623219 BCAR1P56945 870 aa16.41■□□□□ 0.22
LINC00643-205ENST00000623219 KRT17Q04695 432 aa16.41■□□□□ 0.22
LINC00643-205ENST00000623219 RNASELQ05823 741 aaKnown RBP16.41■□□□□ 0.22
LINC00643-205ENST00000623219 KRT79Q5XKE5 535 aa16.41■□□□□ 0.22
LINC00643-205ENST00000623219 LARP1BQ659C4 914 aaKnown RBP16.41■□□□□ 0.22
LINC00643-205ENST00000623219 PPP4R3CPQ6ZMV5 832 aa16.41■□□□□ 0.22
LINC00643-205ENST00000623219 MAEAQ7L5Y9 396 aa16.41■□□□□ 0.22
LINC00643-205ENST00000623219 ZBTB8OSQ8IWT0 167 aa16.41■□□□□ 0.22
LINC00643-205ENST00000623219 CPB2Q96IY4 423 aa16.41■□□□□ 0.22
LINC00643-205ENST00000623219 PRIMPOLQ96LW4 560 aa16.41■□□□□ 0.22
LINC00643-205ENST00000623219 CDCA3Q99618 268 aaPredicted RBP16.41■□□□□ 0.22
LINC00643-205ENST00000623219 CSRNP2Q9H175 543 aa16.41■□□□□ 0.22
LINC00643-205ENST00000623219 C2orf40Q9H1Z8 148 aa16.41■□□□□ 0.22
LINC00643-205ENST00000623219 UBN1Q9NPG3 1134 aa16.41■□□□□ 0.22
LINC00643-205ENST00000623219 ENTPD7Q9NQZ7 604 aa16.41■□□□□ 0.22
LINC00643-205ENST00000623219 DDX19AQ9NUU7 478 aaKnown RBP16.41■□□□□ 0.22
LINC00643-205ENST00000623219 KIAA1024Q9UPX6 916 aa16.41■□□□□ 0.22
LINC00643-205ENST00000623219 INPP5FQ9Y2H2 1132 aa16.41■□□□□ 0.22
LINC00643-205ENST00000623219 PCDHGC5Q9Y5F6 944 aa16.41■□□□□ 0.22
LINC00643-205ENST00000623219 VWA8A3KMH1 1905 aa16.41■□□□□ 0.22
LINC00643-205ENST00000623219 ZMYM2Q9UBW7 1377 aa16.4■□□□□ 0.22
LINC00643-205ENST00000623219 GRXCR2A6NFK2 248 aa16.4■□□□□ 0.22
LINC00643-205ENST00000623219 IL9P15248 144 aa16.4■□□□□ 0.22
LINC00643-205ENST00000623219 NAMPTP43490 491 aa16.4■□□□□ 0.22
LINC00643-205ENST00000623219 NRIP1P48552 1158 aa16.4■□□□□ 0.22
LINC00643-205ENST00000623219 NDUFV1P49821 464 aa16.4■□□□□ 0.22
LINC00643-205ENST00000623219 ERVFC1P60507 584 aa16.4■□□□□ 0.22
LINC00643-205ENST00000623219 ADAM15Q13444 863 aa16.4■□□□□ 0.22
LINC00643-205ENST00000623219 PPP2R5AQ15172 486 aa16.4■□□□□ 0.22
LINC00643-205ENST00000623219 IL17AQ16552 155 aa16.4■□□□□ 0.22
LINC00643-205ENST00000623219 PLPP4Q5VZY2 271 aa16.4■□□□□ 0.22
LINC00643-205ENST00000623219 BRAPQ7Z569 592 aa16.4■□□□□ 0.22
LINC00643-205ENST00000623219 SMG8Q8ND04 991 aaKnown RBP16.4■□□□□ 0.22
LINC00643-205ENST00000623219 MICAL1Q8TDZ2 1067 aa16.4■□□□□ 0.22
LINC00643-205ENST00000623219 TMEM169Q96HH4 297 aa16.4■□□□□ 0.22
LINC00643-205ENST00000623219 TCF25Q9BQ70 676 aa16.4■□□□□ 0.22
LINC00643-205ENST00000623219 EIF2AQ9BY44 585 aaKnown RBP16.4■□□□□ 0.22
LINC00643-205ENST00000623219 BHMT2Q9H2M3 363 aa16.4■□□□□ 0.22
LINC00643-205ENST00000623219 IGFLR1Q9H665 355 aa16.4■□□□□ 0.22
LINC00643-205ENST00000623219 NRDE2Q9H7Z3 1164 aa16.4■□□□□ 0.22
LINC00643-205ENST00000623219 PRMT7Q9NVM4 692 aaPredicted RBP16.4■□□□□ 0.22
LINC00643-205ENST00000623219 IPPQ9Y573 584 aa16.4■□□□□ 0.22
LINC00643-205ENST00000623219 PP2D1A8MPX8 630 aa16.39■□□□□ 0.21
LINC00643-205ENST00000623219 INPPL1O15357 1258 aa16.39■□□□□ 0.21
LINC00643-205ENST00000623219 LINC01565O15544 149 aa16.39■□□□□ 0.21
LINC00643-205ENST00000623219 GLP2RO95838 553 aa16.39■□□□□ 0.21
LINC00643-205ENST00000623219 ITGA4P13612 1032 aa16.39■□□□□ 0.21
LINC00643-205ENST00000623219 DLX2Q07687 328 aaPredicted RBP16.39■□□□□ 0.21
LINC00643-205ENST00000623219 DUSP6Q16828 381 aa16.39■□□□□ 0.21
LINC00643-205ENST00000623219 FAM187BQ17R55 369 aa16.39■□□□□ 0.21
LINC00643-205ENST00000623219 ARL6IP4Q66PJ3 421 aaKnown RBP16.39■□□□□ 0.21
LINC00643-205ENST00000623219 SLC27A1Q6PCB7 646 aa16.39■□□□□ 0.21
LINC00643-205ENST00000623219 HACE1Q8IYU2 909 aa16.39■□□□□ 0.21
LINC00643-205ENST00000623219 KIFAP3Q92845 792 aa16.39■□□□□ 0.21
LINC00643-205ENST00000623219 TRIM6Q9C030 488 aaPredicted RBP16.39■□□□□ 0.21
LINC00643-205ENST00000623219 TLE6Q9H808 572 aa16.39■□□□□ 0.21
LINC00643-205ENST00000623219 NGRNQ9NPE2 291 aaKnown RBP16.39■□□□□ 0.21
LINC00643-205ENST00000623219 KANSL3Q9P2N6 904 aa16.39■□□□□ 0.21
LINC00643-205ENST00000623219 ANK1P16157 1881 aa16.38■□□□□ 0.21
LINC00643-205ENST00000623219 B4GALT5O43286 388 aa16.38■□□□□ 0.21
LINC00643-205ENST00000623219 EYA4O95677 639 aa16.38■□□□□ 0.21
LINC00643-205ENST00000623219 PDCP20941 246 aa16.38■□□□□ 0.21
LINC00643-205ENST00000623219 SMAD4Q13485 552 aaKnown RBP16.38■□□□□ 0.21
LINC00643-205ENST00000623219 SMC1AQ14683 1233 aaKnown RBP16.38■□□□□ 0.21
LINC00643-205ENST00000623219 RBM23Q86U06 439 aaKnown RBP16.38■□□□□ 0.21
LINC00643-205ENST00000623219 FAM178BQ8IXR5 827 aa16.38■□□□□ 0.21
LINC00643-205ENST00000623219 BSNDQ8WZ55 320 aa16.38■□□□□ 0.21
LINC00643-205ENST00000623219 MSLNLQ96KJ4 702 aa16.38■□□□□ 0.21
LINC00643-205ENST00000623219 IFT74Q96LB3 600 aa16.38■□□□□ 0.21
LINC00643-205ENST00000623219 MMTAG2Q9BU76 263 aaKnown RBP16.38■□□□□ 0.21
LINC00643-205ENST00000623219 NT5C3AQ9H0P0 336 aa16.38■□□□□ 0.21
LINC00643-205ENST00000623219 FZD8Q9H461 694 aa16.38■□□□□ 0.21
LINC00643-205ENST00000623219 CD207Q9UJ71 328 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms