RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 LRRC2Q9BYS8 371 aa7.06□□□□□ -1.28
CUX1-220ENST00000607092 PLEKHA4Q9H4M7 779 aa7.06□□□□□ -1.28
CUX1-220ENST00000607092 FAM105AQ9NUU6 356 aa7.06□□□□□ -1.28
CUX1-220ENST00000607092 RNF19AQ9NV58 838 aa7.06□□□□□ -1.28
CUX1-220ENST00000607092 TBC1D13Q9NVG8 400 aa7.06□□□□□ -1.28
CUX1-220ENST00000607092 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP7.06□□□□□ -1.285e-7■■■□□ 18.1
CUX1-220ENST00000607092 LIMD1Q9UGP4 676 aa7.06□□□□□ -1.28
CUX1-220ENST00000607092 SEPT9Q9UHD8 586 aaPredicted RBP7.06□□□□□ -1.28
CUX1-220ENST00000607092 DUSP12Q9UNI6 340 aa7.06□□□□□ -1.28
CUX1-220ENST00000607092 SPTBN2O15020 2390 aa7.06□□□□□ -1.28
CUX1-220ENST00000607092 ANKRD11Q6UB99 2663 aaPredicted RBP7.05□□□□□ -1.28
CUX1-220ENST00000607092 LOXHD1Q8IVV2 1947 aa7.05□□□□□ -1.28
CUX1-220ENST00000607092 EVPLQ92817 2033 aa7.05□□□□□ -1.28
CUX1-220ENST00000607092 IGKV6-21A0A0C4DH24 114 aa7.05□□□□□ -1.28
CUX1-220ENST00000607092 ZNF862O60290 1169 aa7.05□□□□□ -1.28
CUX1-220ENST00000607092 MAFO75444 373 aaPredicted RBP7.05□□□□□ -1.28
CUX1-220ENST00000607092 GLUD1P00367 558 aa7.05□□□□□ -1.28
CUX1-220ENST00000607092 PDGFBP01127 241 aaPredicted RBP7.05□□□□□ -1.28
CUX1-220ENST00000607092 LMNAP02545 664 aaKnown RBP7.05□□□□□ -1.28
CUX1-220ENST00000607092 SOD2P04179 222 aa7.05□□□□□ -1.28
CUX1-220ENST00000607092 GALTP07902 379 aa7.05□□□□□ -1.28
CUX1-220ENST00000607092 PSMA5P28066 241 aa7.05□□□□□ -1.28
CUX1-220ENST00000607092 AXLP30530 894 aa7.05□□□□□ -1.28
CUX1-220ENST00000607092 PBX3P40426 434 aa7.05□□□□□ -1.28
CUX1-220ENST00000607092 RFC5P40937 340 aa7.05□□□□□ -1.28
CUX1-220ENST00000607092 CLCN4P51793 760 aa7.05□□□□□ -1.28
CUX1-220ENST00000607092 PSMC5P62195 406 aa7.05□□□□□ -1.28
CUX1-220ENST00000607092 ANGPT1Q15389 498 aa7.05□□□□□ -1.28
CUX1-220ENST00000607092 TARBP2Q15633 366 aaKnown RBP7.05□□□□□ -1.28
CUX1-220ENST00000607092 Q4G0T1 1027 aa7.05□□□□□ -1.28
CUX1-220ENST00000607092 BMP2KLQ5H9B9 411 aa7.05□□□□□ -1.28
CUX1-220ENST00000607092 SMYD5Q6GMV2 418 aa7.05□□□□□ -1.28
CUX1-220ENST00000607092 PHLDB3Q6NSJ2 640 aa7.05□□□□□ -1.28
CUX1-220ENST00000607092 TMC5Q6UXY8 1006 aa7.05□□□□□ -1.28
CUX1-220ENST00000607092 OTUD6AQ7L8S5 288 aa7.05□□□□□ -1.28
CUX1-220ENST00000607092 TRMT1LQ7Z2T5 733 aaKnown RBP7.05□□□□□ -1.28
CUX1-220ENST00000607092 FRMD5Q7Z6J6 570 aa7.05□□□□□ -1.28
CUX1-220ENST00000607092 MRPL10Q7Z7H8 261 aaKnown RBP7.05□□□□□ -1.28
CUX1-220ENST00000607092 GPR161Q8N6U8 529 aaKnown RBP7.05□□□□□ -1.28
CUX1-220ENST00000607092 SLC22A17Q8WUG5 538 aa7.05□□□□□ -1.28
CUX1-220ENST00000607092 TCP11Q8WWU5 503 aa7.05□□□□□ -1.28
CUX1-220ENST00000607092 PSPC1Q8WXF1 523 aaKnown RBP7.05□□□□□ -1.28
CUX1-220ENST00000607092 SLC5A5Q92911 643 aa7.05□□□□□ -1.28
CUX1-220ENST00000607092 MS4A3Q96HJ5 214 aa7.05□□□□□ -1.28
CUX1-220ENST00000607092 CCDC136Q96JN2 1154 aa7.05□□□□□ -1.28
CUX1-220ENST00000607092 KLHL5Q96PQ7 755 aa7.05□□□□□ -1.28
CUX1-220ENST00000607092 RSAD1Q9HA92 442 aa7.05□□□□□ -1.28
CUX1-220ENST00000607092 KCNK12Q9HB15 430 aa7.05□□□□□ -1.28
CUX1-220ENST00000607092 SUCLA2Q9P2R7 463 aaPredicted RBP7.05□□□□□ -1.28
CUX1-220ENST00000607092 HCSTQ9UBK5 93 aa7.05□□□□□ -1.28
CUX1-220ENST00000607092 BRPF3Q9ULD4 1205 aa7.05□□□□□ -1.28
CUX1-220ENST00000607092 FAN1Q9Y2M0 1017 aa7.05□□□□□ -1.28
CUX1-220ENST00000607092 NID2Q14112 1375 aa7.05□□□□□ -1.28
CUX1-220ENST00000607092 ZMYM2Q9UBW7 1377 aa7.05□□□□□ -1.28
CUX1-220ENST00000607092 GPR179Q6PRD1 2367 aa7.04□□□□□ -1.28
CUX1-220ENST00000607092 MYO10Q9HD67 2058 aa7.04□□□□□ -1.28
CUX1-220ENST00000607092 CYP3A7-CYP3A51PA0A087WV96 503 aa7.04□□□□□ -1.28
CUX1-220ENST00000607092 A0A087WZ62 844 aa7.04□□□□□ -1.28
CUX1-220ENST00000607092 DDX11L8A8MPP1 907 aa7.04□□□□□ -1.28
CUX1-220ENST00000607092 NT5C1B-RDH14C9J2C7 533 aa7.04□□□□□ -1.28
CUX1-220ENST00000607092 MSH4O15457 936 aa7.04□□□□□ -1.28
CUX1-220ENST00000607092 CHMP2AO43633 222 aa7.04□□□□□ -1.28
CUX1-220ENST00000607092 OFD1O75665 1012 aa7.04□□□□□ -1.28
CUX1-220ENST00000607092 ERLIN2O94905 339 aa7.04□□□□□ -1.28
CUX1-220ENST00000607092 ASGR2P07307 311 aa7.04□□□□□ -1.28
CUX1-220ENST00000607092 SRFP11831 508 aa7.04□□□□□ -1.28
CUX1-220ENST00000607092 GCFC2P16383 781 aaKnown RBP7.04□□□□□ -1.28
CUX1-220ENST00000607092 EPCAMP16422 314 aa7.04□□□□□ -1.28
CUX1-220ENST00000607092 IFNAR1P17181 557 aa7.04□□□□□ -1.28
CUX1-220ENST00000607092 XBP1P17861 261 aa7.04□□□□□ -1.28
CUX1-220ENST00000607092 CYP3A7P24462 503 aa7.04□□□□□ -1.28
CUX1-220ENST00000607092 GBP2P32456 591 aaPredicted RBP7.04□□□□□ -1.28
CUX1-220ENST00000607092 ADD1P35611 737 aaKnown RBP7.04□□□□□ -1.28
CUX1-220ENST00000607092 MAGEA9P43362 315 aa7.04□□□□□ -1.28
CUX1-220ENST00000607092 GLUD2P49448 558 aa7.04□□□□□ -1.28
CUX1-220ENST00000607092 NLRP5P59047 1200 aa7.04□□□□□ -1.28
CUX1-220ENST00000607092 MXD4Q14582 209 aaPredicted RBP7.04□□□□□ -1.28
CUX1-220ENST00000607092 MTERF2Q49AM1 385 aa7.04□□□□□ -1.28
CUX1-220ENST00000607092 PDXDC1Q6P996 788 aa7.04□□□□□ -1.28
CUX1-220ENST00000607092 BLOC1S2Q6QNY1 142 aa7.04□□□□□ -1.28
CUX1-220ENST00000607092 RHPN2Q8IUC4 686 aa7.04□□□□□ -1.28
CUX1-220ENST00000607092 SIX5Q8N196 739 aa7.04□□□□□ -1.28
CUX1-220ENST00000607092 SECISBP2LQ93073 1101 aaKnown RBP7.04□□□□□ -1.28
CUX1-220ENST00000607092 PHKBQ93100 1093 aa7.04□□□□□ -1.28
CUX1-220ENST00000607092 RPS6KC1Q96S38 1066 aa7.04□□□□□ -1.28
CUX1-220ENST00000607092 FDXACB1Q9BRP7 624 aaPredicted RBP7.04□□□□□ -1.28
CUX1-220ENST00000607092 COLEC11Q9BWP8 271 aa7.04□□□□□ -1.28
CUX1-220ENST00000607092 GBP3Q9H0R5 595 aa7.04□□□□□ -1.28
CUX1-220ENST00000607092 NRDE2Q9H7Z3 1164 aa7.04□□□□□ -1.28
CUX1-220ENST00000607092 PIDD1Q9HB75 910 aa7.04□□□□□ -1.28
CUX1-220ENST00000607092 WDR6Q9NNW5 1121 aaKnown RBP7.04□□□□□ -1.28
CUX1-220ENST00000607092 AGPAT5Q9NUQ2 364 aa7.04□□□□□ -1.28
CUX1-220ENST00000607092 ZDHHC7Q9NXF8 308 aa7.04□□□□□ -1.28
CUX1-220ENST00000607092 EPS15L1Q9UBC2 864 aa7.04□□□□□ -1.28
CUX1-220ENST00000607092 INPP5FQ9Y2H2 1132 aa7.04□□□□□ -1.28
CUX1-220ENST00000607092 PCDHB2Q9Y5E7 798 aa7.04□□□□□ -1.28
CUX1-220ENST00000607092 COL4A3BPQ9Y5P4 624 aa7.04□□□□□ -1.28
CUX1-220ENST00000607092 CLUHO75153 1309 aa7.03□□□□□ -1.28
CUX1-220ENST00000607092 VPS13AQ96RL7 3174 aa7.03□□□□□ -1.28
CUX1-220ENST00000607092 CPLX1O14810 134 aa7.03□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms