RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 PEX3P56589 373 aa21.36■■□□□ 1.01
UPF1-212ENST00000601689 PRPF4BQ13523 1007 aaKnown RBP21.36■■□□□ 1.01
UPF1-212ENST00000601689 ADGRE1Q14246 886 aa21.36■■□□□ 1.01
UPF1-212ENST00000601689 KARSQ15046 597 aaKnown RBP21.36■■□□□ 1.01
UPF1-212ENST00000601689 FAM187BQ17R55 369 aa21.36■■□□□ 1.01
UPF1-212ENST00000601689 RRAGBQ5VZM2 374 aa21.36■■□□□ 1.01
UPF1-212ENST00000601689 PPP4R3CPQ6ZMV5 832 aa21.36■■□□□ 1.01
UPF1-212ENST00000601689 LINC00301Q8NCQ3 95 aa21.36■■□□□ 1.01
UPF1-212ENST00000601689 KCNG4Q8TDN1 519 aa21.36■■□□□ 1.01
UPF1-212ENST00000601689 KMT5AQ9NQR1 393 aa21.36■■□□□ 1.01
UPF1-212ENST00000601689 KANSL3Q9P2N6 904 aa21.36■■□□□ 1.01
UPF1-212ENST00000601689 TFIP11Q9UBB9 837 aaKnown RBP21.36■■□□□ 1.01
UPF1-212ENST00000601689 STK17AQ9UEE5 414 aa21.36■■□□□ 1.01
UPF1-212ENST00000601689 RBAK-RBAKDNI3L0D1 243 aa21.35■■□□□ 1.01
UPF1-212ENST00000601689 N4BP3O15049 544 aa21.35■■□□□ 1.01
UPF1-212ENST00000601689 PRKCBP05771 671 aa21.35■■□□□ 1.01
UPF1-212ENST00000601689 ITGA4P13612 1032 aa21.35■■□□□ 1.01
UPF1-212ENST00000601689 ARF4P18085 180 aaPredicted RBP21.35■■□□□ 1.01
UPF1-212ENST00000601689 PLCG1P19174 1290 aa21.35■■□□□ 1.01
UPF1-212ENST00000601689 DDIT3P35638 169 aa21.35■■□□□ 1.01
UPF1-212ENST00000601689 SLC12A3P55017 1021 aa21.35■■□□□ 1.01
UPF1-212ENST00000601689 RNASELQ05823 741 aaKnown RBP21.35■■□□□ 1.01
UPF1-212ENST00000601689 DHX8Q14562 1220 aaKnown RBP21.35■■□□□ 1.01
UPF1-212ENST00000601689 SKIV2LQ15477 1246 aaKnown RBP21.35■■□□□ 1.01
UPF1-212ENST00000601689 SLC27A1Q6PCB7 646 aa21.35■■□□□ 1.01
UPF1-212ENST00000601689 KCNK18Q7Z418 384 aa21.35■■□□□ 1.01
UPF1-212ENST00000601689 ZNF598Q86UK7 904 aaKnown RBP21.35■■□□□ 1.01
UPF1-212ENST00000601689 HELQQ8TDG4 1101 aa21.35■■□□□ 1.01
UPF1-212ENST00000601689 LARP4BQ92615 738 aaKnown RBP21.35■■□□□ 1.01
UPF1-212ENST00000601689 SYMPKQ92797 1274 aaKnown RBP21.35■■□□□ 1.01
UPF1-212ENST00000601689 PPP2R3CQ969Q6 453 aa21.35■■□□□ 1.01
UPF1-212ENST00000601689 CPB2Q96IY4 423 aa21.35■■□□□ 1.01
UPF1-212ENST00000601689 FAM193BQ96PV7 902 aaPredicted RBP21.35■■□□□ 1.01
UPF1-212ENST00000601689 TYW1Q9NV66 732 aaKnown RBP21.35■■□□□ 1.01
UPF1-212ENST00000601689 ODF2LQ9ULJ1 636 aa21.35■■□□□ 1.01
UPF1-212ENST00000601689 MTCH2Q9Y6C9 303 aa21.35■■□□□ 1.01
UPF1-212ENST00000601689 EPOPA6NHQ4 379 aa21.34■■□□□ 1.01
UPF1-212ENST00000601689 ACKR2O00590 384 aa21.34■■□□□ 1.01
UPF1-212ENST00000601689 NCLP19338 710 aaKnown RBP21.34■■□□□ 1.01
UPF1-212ENST00000601689 HOXA11P31270 313 aaPredicted RBP21.34■■□□□ 1.01
UPF1-212ENST00000601689 PPM1AP35813 382 aa21.34■■□□□ 1.01
UPF1-212ENST00000601689 GATMP50440 423 aa21.34■■□□□ 1.01
UPF1-212ENST00000601689 GRIN1Q05586 938 aa21.34■■□□□ 1.01
UPF1-212ENST00000601689 STRN3Q13033 797 aa21.34■■□□□ 1.01
UPF1-212ENST00000601689 BMS1Q14692 1282 aaKnown RBP21.34■■□□□ 1.01
UPF1-212ENST00000601689 CCDC85BQ15834 202 aaPredicted RBP21.34■■□□□ 1.01
UPF1-212ENST00000601689 FOXD4L6Q3SYB3 417 aaPredicted RBP21.34■■□□□ 1.01
UPF1-212ENST00000601689 SPECC1Q5M775 1068 aa21.34■■□□□ 1.01
UPF1-212ENST00000601689 FOXD4L3Q6VB84 417 aaPredicted RBP21.34■■□□□ 1.01
UPF1-212ENST00000601689 GPBP1Q86WP2 473 aa21.34■■□□□ 1.01
UPF1-212ENST00000601689 THNSL1Q8IYQ7 743 aa21.34■■□□□ 1.01
UPF1-212ENST00000601689 RAD54LQ92698 747 aa21.34■■□□□ 1.01
UPF1-212ENST00000601689 EPSTI1Q96J88 318 aa21.34■■□□□ 1.01
UPF1-212ENST00000601689 CASD1Q96PB1 797 aa21.34■■□□□ 1.01
UPF1-212ENST00000601689 RUSC1Q9BVN2 902 aa21.34■■□□□ 1.01
UPF1-212ENST00000601689 FZD8Q9H461 694 aa21.34■■□□□ 1.01
UPF1-212ENST00000601689 RSAD1Q9HA92 442 aa21.34■■□□□ 1.01
UPF1-212ENST00000601689 PUF60Q9UHX1 559 aaKnown RBP21.34■■□□□ 1.01
UPF1-212ENST00000601689 A0A1B0GUA9 196 aa21.33■■□□□ 1.01
UPF1-212ENST00000601689 TBCAO75347 108 aaKnown RBP21.33■■□□□ 1.01
UPF1-212ENST00000601689 FAM13AO94988 1023 aa21.33■■□□□ 1.01
UPF1-212ENST00000601689 SCP2P22307 547 aa21.33■■□□□ 1.01
UPF1-212ENST00000601689 ABCD1P33897 745 aa21.33■■□□□ 1.01
UPF1-212ENST00000601689 ALDH7A1P49419 539 aaKnown RBP21.33■■□□□ 1.01
UPF1-212ENST00000601689 KRT17Q04695 432 aa21.33■■□□□ 1.01
UPF1-212ENST00000601689 TIGD5Q53EQ6 642 aa21.33■■□□□ 1.01
UPF1-212ENST00000601689 MRPL10Q7Z7H8 261 aaKnown RBP21.33■■□□□ 1.01
UPF1-212ENST00000601689 SLC17A8Q8NDX2 589 aa21.33■■□□□ 1.01
UPF1-212ENST00000601689 MRPL38Q96DV4 380 aaKnown RBP21.33■■□□□ 1.01
UPF1-212ENST00000601689 CLIC6Q96NY7 704 aa21.33■■□□□ 1.01
UPF1-212ENST00000601689 TMEM134Q9H6X4 195 aa21.33■■□□□ 1.01
UPF1-212ENST00000601689 INPP5FQ9Y2H2 1132 aa21.33■■□□□ 1.01
UPF1-212ENST00000601689 COL4A4P53420 1690 aaPredicted RBP21.32■■□□□ 1
UPF1-212ENST00000601689 CUTAO60888 179 aa21.32■■□□□ 1
UPF1-212ENST00000601689 PLS3P13797 630 aa21.32■■□□□ 1
UPF1-212ENST00000601689 STAT6P42226 847 aa21.32■■□□□ 1
UPF1-212ENST00000601689 NPTX2P47972 431 aa21.32■■□□□ 1
UPF1-212ENST00000601689 UBE3AQ05086 875 aa21.32■■□□□ 1
UPF1-212ENST00000601689 RAD51AP2Q09MP3 1159 aa21.32■■□□□ 1
UPF1-212ENST00000601689 NOMO2Q5JPE7 1267 aa21.32■■□□□ 1
UPF1-212ENST00000601689 SV2BQ7L1I2 683 aa21.32■■□□□ 1
UPF1-212ENST00000601689 SPRED2Q7Z698 418 aa21.32■■□□□ 1
UPF1-212ENST00000601689 BSNDQ8WZ55 320 aa21.32■■□□□ 1
UPF1-212ENST00000601689 ZNF558Q96NG5 402 aa21.32■■□□□ 1
UPF1-212ENST00000601689 LRRC27Q9C0I9 530 aa21.32■■□□□ 1
UPF1-212ENST00000601689 POLD4Q9HCU8 107 aa21.32■■□□□ 1
UPF1-212ENST00000601689 LPXNO60711 386 aa21.31■■□□□ 1
UPF1-212ENST00000601689 ATF7P17544 494 aaPredicted RBP21.31■■□□□ 1
UPF1-212ENST00000601689 ME1P48163 572 aa21.31■■□□□ 1
UPF1-212ENST00000601689 KRT85P78386 507 aa21.31■■□□□ 1
UPF1-212ENST00000601689 MCM6Q14566 821 aa21.31■■□□□ 1
UPF1-212ENST00000601689 AMHR2Q16671 573 aa21.31■■□□□ 1
UPF1-212ENST00000601689 DCAF4L1Q3SXM0 396 aa21.31■■□□□ 1
UPF1-212ENST00000601689 LONRF3Q496Y0 759 aa21.31■■□□□ 1
UPF1-212ENST00000601689 CLLU1OSQ5K130 101 aa21.31■■□□□ 1
UPF1-212ENST00000601689 KLHL23Q8NBE8 558 aa21.31■■□□□ 1
UPF1-212ENST00000601689 SPIRE2Q8WWL2 714 aa21.31■■□□□ 1
UPF1-212ENST00000601689 LPPQ93052 612 aa21.31■■□□□ 1
UPF1-212ENST00000601689 MRPL4Q9BYD3 311 aaKnown RBP21.31■■□□□ 1
UPF1-212ENST00000601689 ZHX3Q9H4I2 956 aa21.31■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms