RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 DACH1Q9UI36 760 aa15.77■□□□□ 0.12
UPF1-211ENST00000600868 EXOC7Q9UPT5 735 aa15.77■□□□□ 0.12
UPF1-211ENST00000600868 MAPK8IP1Q9UQF2 711 aa15.77■□□□□ 0.12
UPF1-211ENST00000600868 CSDE1O75534 798 aaKnown RBP15.76■□□□□ 0.11
UPF1-211ENST00000600868 PIGRP01833 764 aa15.76■□□□□ 0.11
UPF1-211ENST00000600868 SFPQP23246 707 aaKnown RBP eCLIP15.76■□□□□ 0.11
UPF1-211ENST00000600868 AMHR2Q16671 573 aa15.76■□□□□ 0.11
UPF1-211ENST00000600868 MRPL4Q9BYD3 311 aaKnown RBP15.76■□□□□ 0.11
UPF1-211ENST00000600868 KCTD10Q9H3F6 313 aa15.76■□□□□ 0.11
UPF1-211ENST00000600868 NOC2LQ9Y3T9 749 aaKnown RBP15.76■□□□□ 0.11
UPF1-211ENST00000600868 CNTNAP2Q9UHC6 1331 aa15.75■□□□□ 0.11
UPF1-211ENST00000600868 ALPK3Q96L96 1907 aa15.75■□□□□ 0.11
UPF1-211ENST00000600868 PSMA7O14818 248 aa15.75■□□□□ 0.11
UPF1-211ENST00000600868 RPS6KA5O75582 802 aa15.75■□□□□ 0.11
UPF1-211ENST00000600868 SNRPFP62306 86 aaKnown RBP15.75■□□□□ 0.11
UPF1-211ENST00000600868 LPIN1Q14693 890 aa15.75■□□□□ 0.11
UPF1-211ENST00000600868 CENPPQ6IPU0 288 aa15.75■□□□□ 0.11
UPF1-211ENST00000600868 FOXR2Q6PJQ5 311 aa15.75■□□□□ 0.11
UPF1-211ENST00000600868 LRSAM1Q6UWE0 723 aa15.75■□□□□ 0.11
UPF1-211ENST00000600868 ZPBP2Q6X784 338 aa15.75■□□□□ 0.11
UPF1-211ENST00000600868 TSHZ1Q6ZSZ6 1077 aa15.75■□□□□ 0.11
UPF1-211ENST00000600868 FAM43BQ6ZT52 329 aaPredicted RBP15.75■□□□□ 0.11
UPF1-211ENST00000600868 CATSPER4Q7RTX7 472 aa15.75■□□□□ 0.11
UPF1-211ENST00000600868 FAM228AQ86W67 206 aa15.75■□□□□ 0.11
UPF1-211ENST00000600868 NELFCDQ8IXH7 590 aa15.75■□□□□ 0.11
UPF1-211ENST00000600868 SYCP3Q8IZU3 236 aa15.75■□□□□ 0.11
UPF1-211ENST00000600868 GBP3Q9H0R5 595 aa15.75■□□□□ 0.11
UPF1-211ENST00000600868 CGNQ9P2M7 1197 aaKnown RBP15.75■□□□□ 0.11
UPF1-211ENST00000600868 UMODL1Q5DID0 1318 aa15.74■□□□□ 0.11
UPF1-211ENST00000600868 TRIM43BA6NCK2 446 aa15.74■□□□□ 0.11
UPF1-211ENST00000600868 PDXKO00764 312 aa15.74■□□□□ 0.11
UPF1-211ENST00000600868 GPR182O15218 404 aa15.74■□□□□ 0.11
UPF1-211ENST00000600868 TGFB1I1O43294 461 aa15.74■□□□□ 0.11
UPF1-211ENST00000600868 TSPAN1O60635 241 aa15.74■□□□□ 0.11
UPF1-211ENST00000600868 ERLIN2O94905 339 aa15.74■□□□□ 0.11
UPF1-211ENST00000600868 CAVIN2O95810 425 aa15.74■□□□□ 0.11
UPF1-211ENST00000600868 TIMP1P01033 207 aa15.74■□□□□ 0.11
UPF1-211ENST00000600868 EDN1P05305 212 aa15.74■□□□□ 0.11
UPF1-211ENST00000600868 GHRP10912 638 aa15.74■□□□□ 0.11
UPF1-211ENST00000600868 CCNE1P24864 410 aa15.74■□□□□ 0.11
UPF1-211ENST00000600868 ERCC5P28715 1186 aaPredicted RBP15.74■□□□□ 0.11
UPF1-211ENST00000600868 AXLP30530 894 aa15.74■□□□□ 0.11
UPF1-211ENST00000600868 NCBP1Q09161 790 aaKnown RBP15.74■□□□□ 0.11
UPF1-211ENST00000600868 PRPF4BQ13523 1007 aaKnown RBP15.74■□□□□ 0.11
UPF1-211ENST00000600868 MBTPS1Q14703 1052 aa15.74■□□□□ 0.11
UPF1-211ENST00000600868 ANO6Q4KMQ2 910 aa15.74■□□□□ 0.11
UPF1-211ENST00000600868 KLHL10Q6JEL2 608 aa15.74■□□□□ 0.11
UPF1-211ENST00000600868 GOLGA5Q8TBA6 731 aa15.74■□□□□ 0.11
UPF1-211ENST00000600868 NELFBQ8WX92 580 aa15.74■□□□□ 0.11
UPF1-211ENST00000600868 P2RX5Q93086 422 aa15.74■□□□□ 0.11
UPF1-211ENST00000600868 TRIM43Q96BQ3 446 aaPredicted RBP15.74■□□□□ 0.11
UPF1-211ENST00000600868 ACO2Q99798 780 aaKnown RBP15.74■□□□□ 0.11
UPF1-211ENST00000600868 TARS2Q9BW92 718 aaKnown RBP15.74■□□□□ 0.11
UPF1-211ENST00000600868 PPP1R12CQ9BZL4 782 aa15.74■□□□□ 0.11
UPF1-211ENST00000600868 WNT8AQ9H1J5 351 aa15.74■□□□□ 0.11
UPF1-211ENST00000600868 SEMA6BQ9H3T3 888 aa15.74■□□□□ 0.11
UPF1-211ENST00000600868 AGO3Q9H9G7 860 aaKnown RBP15.74■□□□□ 0.11
UPF1-211ENST00000600868 ERVK-5Q9HDB9 667 aa15.74■□□□□ 0.11
UPF1-211ENST00000600868 AGPAT5Q9NUQ2 364 aa15.74■□□□□ 0.11
UPF1-211ENST00000600868 TYW1Q9NV66 732 aaKnown RBP15.74■□□□□ 0.11
UPF1-211ENST00000600868 ZMYM2Q9UBW7 1377 aa15.74■□□□□ 0.11
UPF1-211ENST00000600868 TANC1Q9C0D5 1861 aa15.74■□□□□ 0.11
UPF1-211ENST00000600868 BICDL2A1A5D9 508 aa15.73■□□□□ 0.11
UPF1-211ENST00000600868 HNRNPDLO14979 420 aaKnown RBP15.73■□□□□ 0.11
UPF1-211ENST00000600868 ARF4P18085 180 aaPredicted RBP15.73■□□□□ 0.11
UPF1-211ENST00000600868 FGFR4P22455 802 aa15.73■□□□□ 0.11
UPF1-211ENST00000600868 CYP2C18P33260 490 aa15.73■□□□□ 0.11
UPF1-211ENST00000600868 RFC2P35250 354 aa15.73■□□□□ 0.11
UPF1-211ENST00000600868 PAK1Q13153 545 aa15.73■□□□□ 0.11
UPF1-211ENST00000600868 GPNMBQ14956 572 aa15.73■□□□□ 0.11
UPF1-211ENST00000600868 ZCWPW2Q504Y3 356 aa15.73■□□□□ 0.11
UPF1-211ENST00000600868 ATF7IP2Q5U623 682 aa15.73■□□□□ 0.11
UPF1-211ENST00000600868 C11orf57Q6ZUT1 292 aaPredicted RBP15.73■□□□□ 0.11
UPF1-211ENST00000600868 HS2ST1Q7LGA3 356 aa15.73■□□□□ 0.11
UPF1-211ENST00000600868 BICD1Q96G01 975 aa15.73■□□□□ 0.11
UPF1-211ENST00000600868 OSBPL7Q9BZF2 842 aa15.73■□□□□ 0.11
UPF1-211ENST00000600868 NAT10Q9H0A0 1025 aaKnown RBP15.73■□□□□ 0.11
UPF1-211ENST00000600868 DNAJC25Q9H1X3 360 aa15.73■□□□□ 0.11
UPF1-211ENST00000600868 PRDM5Q9NQX1 630 aaPredicted RBP15.73■□□□□ 0.11
UPF1-211ENST00000600868 RWDD2AQ9UIY3 292 aa15.73■□□□□ 0.11
UPF1-211ENST00000600868 PADI3Q9ULW8 664 aa15.73■□□□□ 0.11
UPF1-211ENST00000600868 ST3GAL5Q9UNP4 418 aa15.73■□□□□ 0.11
UPF1-211ENST00000600868 CTNND2Q9UQB3 1225 aa15.73■□□□□ 0.11
UPF1-211ENST00000600868 TRAF3IP3Q9Y228 551 aa15.73■□□□□ 0.11
UPF1-211ENST00000600868 TNFSF13BQ9Y275 285 aa15.73■□□□□ 0.11
UPF1-211ENST00000600868 STYXL1Q9Y6J8 313 aa15.73■□□□□ 0.11
UPF1-211ENST00000600868 A0A1B0GUA9 196 aa15.72■□□□□ 0.11
UPF1-211ENST00000600868 TTLL13PA6NNM8 815 aa15.72■□□□□ 0.11
UPF1-211ENST00000600868 B4GALT5O43286 388 aa15.72■□□□□ 0.11
UPF1-211ENST00000600868 CALUO43852 315 aaPredicted RBP15.72■□□□□ 0.11
UPF1-211ENST00000600868 NBNO60934 754 aa15.72■□□□□ 0.11
UPF1-211ENST00000600868 TOM1L1O75674 476 aa15.72■□□□□ 0.11
UPF1-211ENST00000600868 CXCL10P02778 98 aa15.72■□□□□ 0.11
UPF1-211ENST00000600868 RAG1P15918 1043 aa15.72■□□□□ 0.11
UPF1-211ENST00000600868 PROZP22891 400 aa15.72■□□□□ 0.11
UPF1-211ENST00000600868 HOXA11P31270 313 aaPredicted RBP15.72■□□□□ 0.11
UPF1-211ENST00000600868 CD52P31358 61 aa15.72■□□□□ 0.11
UPF1-211ENST00000600868 LIG4P49917 911 aa15.72■□□□□ 0.11
UPF1-211ENST00000600868 CCL23P55773 120 aa15.72■□□□□ 0.11
UPF1-211ENST00000600868 LRRC63Q05C16 580 aa15.72■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms