RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 C5orf42Q9H799 3197 aa14.06□□□□□ -0.16
UPF1-208ENST00000600012 TBKBP1A7MCY6 615 aa14.06□□□□□ -0.16
UPF1-208ENST00000600012 MED24O75448 989 aa14.06□□□□□ -0.16
UPF1-208ENST00000600012 C22orf31O95567 290 aa14.06□□□□□ -0.16
UPF1-208ENST00000600012 GLP2RO95838 553 aa14.06□□□□□ -0.16
UPF1-208ENST00000600012 ECM1Q16610 540 aa14.06□□□□□ -0.16
UPF1-208ENST00000600012 TMEM119Q4V9L6 283 aa14.06□□□□□ -0.16
UPF1-208ENST00000600012 PDE12Q6L8Q7 609 aaKnown RBP14.06□□□□□ -0.16
UPF1-208ENST00000600012 ZNF746Q6NUN9 644 aaPredicted RBP14.06□□□□□ -0.16
UPF1-208ENST00000600012 B3GNT9Q6UX72 402 aa14.06□□□□□ -0.16
UPF1-208ENST00000600012 RBM43Q6ZSC3 357 aaKnown RBP14.06□□□□□ -0.16
UPF1-208ENST00000600012 RBM23Q86U06 439 aaKnown RBP14.06□□□□□ -0.16
UPF1-208ENST00000600012 SMAP1Q8IYB5 467 aaPredicted RBP14.06□□□□□ -0.16
UPF1-208ENST00000600012 CEP57L1Q8IYX8 460 aa14.06□□□□□ -0.16
UPF1-208ENST00000600012 IQUBQ8NA54 791 aa14.06□□□□□ -0.16
UPF1-208ENST00000600012 ERMNQ8TAM6 284 aa14.06□□□□□ -0.16
UPF1-208ENST00000600012 MICAL1Q8TDZ2 1067 aa14.06□□□□□ -0.16
UPF1-208ENST00000600012 CDK5RAP3Q96JB5 506 aa14.06□□□□□ -0.16
UPF1-208ENST00000600012 MFSD14AQ96MC6 490 aa14.06□□□□□ -0.16
UPF1-208ENST00000600012 PYM1Q9BRP8 204 aaKnown RBP14.06□□□□□ -0.16
UPF1-208ENST00000600012 TLR9Q9NR96 1032 aa14.06□□□□□ -0.16
UPF1-208ENST00000600012 TMEM161AQ9NX61 479 aa14.06□□□□□ -0.16
UPF1-208ENST00000600012 USP25Q9UHP3 1055 aa14.06□□□□□ -0.16
UPF1-208ENST00000600012 BARX2Q9UMQ3 279 aaPredicted RBP14.06□□□□□ -0.16
UPF1-208ENST00000600012 MAFBQ9Y5Q3 323 aaPredicted RBP14.06□□□□□ -0.16
UPF1-208ENST00000600012 FGF18O76093 207 aa14.05□□□□□ -0.16
UPF1-208ENST00000600012 LETM1O95202 739 aaPredicted RBP14.05□□□□□ -0.16
UPF1-208ENST00000600012 PSAPP07602 524 aa14.05□□□□□ -0.16
UPF1-208ENST00000600012 SLFN14P0C7P3 912 aa14.05□□□□□ -0.16
UPF1-208ENST00000600012 LAG3P18627 525 aa14.05□□□□□ -0.16
UPF1-208ENST00000600012 ATP4AP20648 1035 aa14.05□□□□□ -0.16
UPF1-208ENST00000600012 AFMP43652 599 aa14.05□□□□□ -0.16
UPF1-208ENST00000600012 NHLH1Q02575 133 aa14.05□□□□□ -0.16
UPF1-208ENST00000600012 CYP4A11Q02928 519 aa14.05□□□□□ -0.16
UPF1-208ENST00000600012 PNOCQ13519 176 aa14.05□□□□□ -0.16
UPF1-208ENST00000600012 KIZQ2M2Z5 673 aa14.05□□□□□ -0.16
UPF1-208ENST00000600012 FAM102BQ5T8I3 360 aa14.05□□□□□ -0.16
UPF1-208ENST00000600012 HAUS3Q68CZ6 603 aa14.05□□□□□ -0.16
UPF1-208ENST00000600012 MIER3Q7Z3K6 550 aa14.05□□□□□ -0.16
UPF1-208ENST00000600012 ALYREFQ86V81 257 aaKnown RBP14.05□□□□□ -0.16
UPF1-208ENST00000600012 FAM228AQ86W67 206 aa14.05□□□□□ -0.16
UPF1-208ENST00000600012 THNSL1Q8IYQ7 743 aa14.05□□□□□ -0.16
UPF1-208ENST00000600012 COLGALT1Q8NBJ5 622 aa14.05□□□□□ -0.16
UPF1-208ENST00000600012 STAMQ92783 540 aa14.05□□□□□ -0.16
UPF1-208ENST00000600012 EDAQ92838 391 aa14.05□□□□□ -0.16
UPF1-208ENST00000600012 FBXL18Q96ME1 805 aa14.05□□□□□ -0.16
UPF1-208ENST00000600012 PPP1R16BQ96T49 567 aa14.05□□□□□ -0.16
UPF1-208ENST00000600012 CDCA3Q99618 268 aaPredicted RBP14.05□□□□□ -0.16
UPF1-208ENST00000600012 OSMRQ99650 979 aa14.05□□□□□ -0.16
UPF1-208ENST00000600012 EIF2AK1Q9BQI3 630 aaKnown RBP14.05□□□□□ -0.16
UPF1-208ENST00000600012 ELAC1Q9H777 363 aaKnown RBP14.05□□□□□ -0.16
UPF1-208ENST00000600012 ATP6V0A4Q9HBG4 840 aa14.05□□□□□ -0.16
UPF1-208ENST00000600012 USP15Q9Y4E8 981 aaPredicted RBP14.05□□□□□ -0.16
UPF1-208ENST00000600012 PCDHGC5Q9Y5F6 944 aa14.05□□□□□ -0.16
UPF1-208ENST00000600012 MYH11P35749 1972 aa14.04□□□□□ -0.16
UPF1-208ENST00000600012 LOC730098B7Z3J9 87 aa14.04□□□□□ -0.16
UPF1-208ENST00000600012 MAGEB2O15479 319 aa14.04□□□□□ -0.16
UPF1-208ENST00000600012 VTNP04004 478 aa14.04□□□□□ -0.16
UPF1-208ENST00000600012 CASP1P29466 404 aa14.04□□□□□ -0.16
UPF1-208ENST00000600012 ZNF445P59923 1031 aa14.04□□□□□ -0.16
UPF1-208ENST00000600012 FAM189BP81408 668 aa14.04□□□□□ -0.16
UPF1-208ENST00000600012 CBX2Q14781 532 aaPredicted RBP14.04□□□□□ -0.16
UPF1-208ENST00000600012 POSTNQ15063 836 aa14.04□□□□□ -0.16
UPF1-208ENST00000600012 HYIQ5T013 277 aa14.04□□□□□ -0.16
UPF1-208ENST00000600012 POTEGQ6S5H5 508 aa14.04□□□□□ -0.16
UPF1-208ENST00000600012 KCNK18Q7Z418 384 aa14.04□□□□□ -0.16
UPF1-208ENST00000600012 ZNF710Q8N1W2 664 aa14.04□□□□□ -0.16
UPF1-208ENST00000600012 METTL13Q8N6R0 699 aa14.04□□□□□ -0.16
UPF1-208ENST00000600012 PAGE5Q96GU1 130 aa14.04□□□□□ -0.16
UPF1-208ENST00000600012 DYDC2Q96IM9 177 aa14.04□□□□□ -0.16
UPF1-208ENST00000600012 FAM167AQ96KS9 214 aa14.04□□□□□ -0.16
UPF1-208ENST00000600012 MAP7D2Q96T17 732 aa14.04□□□□□ -0.16
UPF1-208ENST00000600012 TYW1Q9NV66 732 aaKnown RBP14.04□□□□□ -0.16
UPF1-208ENST00000600012 RGL1Q9NZL6 768 aa14.04□□□□□ -0.16
UPF1-208ENST00000600012 LZTS1Q9Y250 596 aa14.04□□□□□ -0.16
UPF1-208ENST00000600012 PCDHA10Q9Y5I2 948 aa14.04□□□□□ -0.16
UPF1-208ENST00000600012 ZDBF2Q9HCK1 2354 aa14.03□□□□□ -0.16
UPF1-208ENST00000600012 A0A087WWV3 80 aa14.03□□□□□ -0.16
UPF1-208ENST00000600012 HOXA2O43364 376 aa14.03□□□□□ -0.16
UPF1-208ENST00000600012 GPR32O75388 356 aa14.03□□□□□ -0.16
UPF1-208ENST00000600012 SPATA31C1P0DKV0 1188 aa14.03□□□□□ -0.16
UPF1-208ENST00000600012 SRGAP2BP0DMP2 458 aa14.03□□□□□ -0.16
UPF1-208ENST00000600012 FGFR1P11362 822 aa14.03□□□□□ -0.16
UPF1-208ENST00000600012 ATF7P17544 494 aaPredicted RBP14.03□□□□□ -0.16
UPF1-208ENST00000600012 CTTNQ14247 550 aaKnown RBP14.03□□□□□ -0.16
UPF1-208ENST00000600012 DSC3Q14574 896 aa14.03□□□□□ -0.16
UPF1-208ENST00000600012 EPHA7Q15375 998 aa14.03□□□□□ -0.16
UPF1-208ENST00000600012 DUSP6Q16828 381 aa14.03□□□□□ -0.16
UPF1-208ENST00000600012 BMP8AQ7Z5Y6 402 aa14.03□□□□□ -0.16
UPF1-208ENST00000600012 CATSPER3Q86XQ3 398 aa14.03□□□□□ -0.16
UPF1-208ENST00000600012 MTRQ99707 1265 aa14.03□□□□□ -0.16
UPF1-208ENST00000600012 PHF7Q9BWX1 381 aaPredicted RBP14.03□□□□□ -0.16
UPF1-208ENST00000600012 TMEM117Q9H0C3 514 aa14.03□□□□□ -0.16
UPF1-208ENST00000600012 CWH43Q9H720 699 aa14.03□□□□□ -0.16
UPF1-208ENST00000600012 BLOC1S4Q9NUP1 217 aa14.03□□□□□ -0.16
UPF1-208ENST00000600012 HCSTQ9UBK5 93 aa14.03□□□□□ -0.16
UPF1-208ENST00000600012 GABBR1Q9UBS5 961 aa14.03□□□□□ -0.16
UPF1-208ENST00000600012 PUF60Q9UHX1 559 aaKnown RBP14.03□□□□□ -0.16
UPF1-208ENST00000600012 KIAA1024Q9UPX6 916 aa14.03□□□□□ -0.16
UPF1-208ENST00000600012 SAMM50Q9Y512 469 aa14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms