RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 MAGED2Q9UNF1 606 aaPredicted RBP21.77■■□□□ 1.08
UPF1-207ENST00000599848 CTNND1O60716 968 aaKnown RBP21.77■■□□□ 1.08
UPF1-207ENST00000599848 DNAJC6O75061 913 aa21.77■■□□□ 1.08
UPF1-207ENST00000599848 ALDH1A3P47895 512 aa21.77■■□□□ 1.08
UPF1-207ENST00000599848 GPC5P78333 572 aa21.77■■□□□ 1.08
UPF1-207ENST00000599848 SNX1Q13596 522 aa21.77■■□□□ 1.08
UPF1-207ENST00000599848 KLHL38Q2WGJ6 581 aa21.77■■□□□ 1.08
UPF1-207ENST00000599848 MED15Q96RN5 788 aa21.77■■□□□ 1.08
UPF1-207ENST00000599848 IL18RAPO95256 599 aa21.77■■□□□ 1.08
UPF1-207ENST00000599848 HOMEZQ8IX15 550 aa21.77■■□□□ 1.08
UPF1-207ENST00000599848 SMAP1Q8IYB5 467 aaPredicted RBP21.77■■□□□ 1.08
UPF1-207ENST00000599848 KCND2Q9NZV8 630 aa21.77■■□□□ 1.08
UPF1-207ENST00000599848 PRR36Q9H6K5 1346 aa21.77■■□□□ 1.08
UPF1-207ENST00000599848 CYP2D7A0A087X1C5 515 aa21.77■■□□□ 1.08
UPF1-207ENST00000599848 GAS2O43903 313 aaKnown RBP21.77■■□□□ 1.08
UPF1-207ENST00000599848 ASMTLO95671 621 aa21.77■■□□□ 1.08
UPF1-207ENST00000599848 VAMP7P51809 220 aa21.77■■□□□ 1.08
UPF1-207ENST00000599848 CUL1Q13616 776 aa21.77■■□□□ 1.08
UPF1-207ENST00000599848 SFR1Q86XK3 245 aa21.77■■□□□ 1.08
UPF1-207ENST00000599848 ASPSCR1Q9BZE9 553 aa21.77■■□□□ 1.08
UPF1-207ENST00000599848 MAN1B1Q9UKM7 699 aa21.77■■□□□ 1.08
UPF1-207ENST00000599848 PPP2R3BQ9Y5P8 575 aa21.77■■□□□ 1.08
UPF1-207ENST00000599848 HSPA4LO95757 839 aa21.76■■□□□ 1.07
UPF1-207ENST00000599848 LRG1P02750 347 aa21.76■■□□□ 1.07
UPF1-207ENST00000599848 OCM2P0CE71 109 aa21.76■■□□□ 1.07
UPF1-207ENST00000599848 OCMP0CE72 109 aaPredicted RBP21.76■■□□□ 1.07
UPF1-207ENST00000599848 NSUN2Q08J23 767 aaKnown RBP eCLIP21.76■■□□□ 1.07
UPF1-207ENST00000599848 SV2CQ496J9 727 aa21.76■■□□□ 1.07
UPF1-207ENST00000599848 HP1BP3Q5SSJ5 553 aaPredicted RBP21.76■■□□□ 1.07
UPF1-207ENST00000599848 TBC1D16Q8TBP0 767 aa21.76■■□□□ 1.07
UPF1-207ENST00000599848 PIGOQ8TEQ8 1089 aa21.76■■□□□ 1.07
UPF1-207ENST00000599848 LXNQ9BS40 222 aa21.76■■□□□ 1.07
UPF1-207ENST00000599848 PSMC1P62191 440 aaKnown RBP21.76■■□□□ 1.07
UPF1-207ENST00000599848 SZRD1Q7Z422 152 aa21.76■■□□□ 1.07
UPF1-207ENST00000599848 GGPS1O95749 300 aa21.76■■□□□ 1.07
UPF1-207ENST00000599848 ESRRGP62508 458 aa21.76■■□□□ 1.07
UPF1-207ENST00000599848 GNGT1P63211 74 aa21.76■■□□□ 1.07
UPF1-207ENST00000599848 CEP55Q53EZ4 464 aa21.76■■□□□ 1.07
UPF1-207ENST00000599848 FSCBQ5H9T9 825 aa21.76■■□□□ 1.07
UPF1-207ENST00000599848 PAGE5Q96GU1 130 aa21.76■■□□□ 1.07
UPF1-207ENST00000599848 DESI2Q9BSY9 194 aa21.76■■□□□ 1.07
UPF1-207ENST00000599848 MAP4P27816 1152 aaKnown RBP21.76■■□□□ 1.07
UPF1-207ENST00000599848 NR5A1Q13285 461 aa21.76■■□□□ 1.07
UPF1-207ENST00000599848 ARHGEF7Q14155 803 aa21.76■■□□□ 1.07
UPF1-207ENST00000599848 SCARF1Q14162 830 aa21.76■■□□□ 1.07
UPF1-207ENST00000599848 SYTL3Q4VX76 610 aa21.76■■□□□ 1.07
UPF1-207ENST00000599848 TEDDM1Q5T9Z0 273 aa21.76■■□□□ 1.07
UPF1-207ENST00000599848 WHAMMQ8TF30 809 aa21.76■■□□□ 1.07
UPF1-207ENST00000599848 NRBF2Q96F24 287 aa21.76■■□□□ 1.07
UPF1-207ENST00000599848 SPATA16Q9BXB7 569 aa21.76■■□□□ 1.07
UPF1-207ENST00000599848 TRPC7Q9HCX4 862 aa21.76■■□□□ 1.07
UPF1-207ENST00000599848 HIST1H2AGP0C0S8 130 aaPredicted RBP21.76■■□□□ 1.07
UPF1-207ENST00000599848 HIST1H2ADP20671 130 aa21.76■■□□□ 1.07
UPF1-207ENST00000599848 CYP2C19P33261 490 aa21.76■■□□□ 1.07
UPF1-207ENST00000599848 PLTPP55058 493 aa21.76■■□□□ 1.07
UPF1-207ENST00000599848 SNAP25P60880 206 aa21.76■■□□□ 1.07
UPF1-207ENST00000599848 ANGEL2Q5VTE6 544 aaKnown RBP21.76■■□□□ 1.07
UPF1-207ENST00000599848 HIST1H2AHQ96KK5 128 aa21.76■■□□□ 1.07
UPF1-207ENST00000599848 HIST1H2AJQ99878 128 aa21.76■■□□□ 1.07
UPF1-207ENST00000599848 H2AFJQ9BTM1 129 aa21.76■■□□□ 1.07
UPF1-207ENST00000599848 GABPB1Q06547 395 aaPredicted RBP21.75■■□□□ 1.07
UPF1-207ENST00000599848 ANKRD13CQ8N6S4 541 aa21.75■■□□□ 1.07
UPF1-207ENST00000599848 TMEM169Q96HH4 297 aa21.75■■□□□ 1.07
UPF1-207ENST00000599848 KRT82Q9NSB4 513 aa21.75■■□□□ 1.07
UPF1-207ENST00000599848 ZNF70Q9UC06 446 aaPredicted RBP21.75■■□□□ 1.07
UPF1-207ENST00000599848 A0A0G2JLW4 131 aa21.75■■□□□ 1.07
UPF1-207ENST00000599848 HDLBPQ00341 1268 aaKnown RBP21.75■■□□□ 1.07
UPF1-207ENST00000599848 KNOP1Q1ED39 458 aaKnown RBP21.75■■□□□ 1.07
UPF1-207ENST00000599848 PATL1Q86TB9 770 aaKnown RBP21.75■■□□□ 1.07
UPF1-207ENST00000599848 WDR75Q8IWA0 830 aaKnown RBP21.75■■□□□ 1.07
UPF1-207ENST00000599848 TTC30BQ8N4P2 665 aa21.75■■□□□ 1.07
UPF1-207ENST00000599848 BARHL2Q9NY43 387 aa21.75■■□□□ 1.07
UPF1-207ENST00000599848 PNPLA4P41247 253 aa21.75■■□□□ 1.07
UPF1-207ENST00000599848 ACAD11Q709F0 780 aa21.75■■□□□ 1.07
UPF1-207ENST00000599848 SCFD1Q8WVM8 642 aa21.75■■□□□ 1.07
UPF1-207ENST00000599848 PNPLA7Q6ZV29 1317 aa21.75■■□□□ 1.07
UPF1-207ENST00000599848 HBP1O60381 514 aa21.75■■□□□ 1.07
UPF1-207ENST00000599848 EGFRP00533 1210 aa21.75■■□□□ 1.07
UPF1-207ENST00000599848 DEUP1Q05D60 604 aa21.75■■□□□ 1.07
UPF1-207ENST00000599848 PI16Q6UXB8 463 aa21.75■■□□□ 1.07
UPF1-207ENST00000599848 ZNF589Q86UQ0 364 aaPredicted RBP21.75■■□□□ 1.07
UPF1-207ENST00000599848 PLEKHA5Q9HAU0 1116 aa21.75■■□□□ 1.07
UPF1-207ENST00000599848 ANAPC7Q9UJX3 599 aa21.75■■□□□ 1.07
UPF1-207ENST00000599848 ZW10O43264 779 aa21.74■■□□□ 1.07
UPF1-207ENST00000599848 DR1Q01658 176 aa21.74■■□□□ 1.07
UPF1-207ENST00000599848 TAS2R42Q7RTR8 314 aa21.74■■□□□ 1.07
UPF1-207ENST00000599848 CAPS2Q9BXY5 557 aa21.74■■□□□ 1.07
UPF1-207ENST00000599848 POTEB3A0JP26 581 aa21.74■■□□□ 1.07
UPF1-207ENST00000599848 GNA15P30679 374 aa21.74■■□□□ 1.07
UPF1-207ENST00000599848 POTEBQ6S5H4 581 aa21.74■■□□□ 1.07
UPF1-207ENST00000599848 RNF149Q8NC42 400 aa21.74■■□□□ 1.07
UPF1-207ENST00000599848 RDM1Q8NG50 284 aa21.74■■□□□ 1.07
UPF1-207ENST00000599848 RMDN1Q96DB5 314 aa21.74■■□□□ 1.07
UPF1-207ENST00000599848 NDFIP2Q9NV92 336 aa21.74■■□□□ 1.07
UPF1-207ENST00000599848 CHCHD3Q9NX63 227 aaKnown RBP21.74■■□□□ 1.07
UPF1-207ENST00000599848 TBX3O15119 743 aa21.74■■□□□ 1.07
UPF1-207ENST00000599848 ACADSBP45954 432 aa21.74■■□□□ 1.07
UPF1-207ENST00000599848 MTFR1Q15390 333 aa21.74■■□□□ 1.07
UPF1-207ENST00000599848 SF3B3Q15393 1217 aaKnown RBP21.74■■□□□ 1.07
UPF1-207ENST00000599848 CCDC197Q8NCU1 140 aa21.74■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms