RNA–Protein interactions for RNA: ENST00000599575.5

SHKBP1-219, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 810 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-219ENST00000599575 AMHR2Q16671 573 aa18.23■□□□□ 0.51
SHKBP1-219ENST00000599575 C9orf50Q5SZB4 431 aa18.23■□□□□ 0.51
SHKBP1-219ENST00000599575 HAUS6Q7Z4H7 955 aa18.23■□□□□ 0.51
SHKBP1-219ENST00000599575 ADAM2Q99965 735 aa18.23■□□□□ 0.51
SHKBP1-219ENST00000599575 ZHX3Q9H4I2 956 aa18.23■□□□□ 0.51
SHKBP1-219ENST00000599575 PIN4Q9Y237 131 aaKnown RBP18.23■□□□□ 0.51
SHKBP1-219ENST00000599575 PCDHB13Q9Y5F0 798 aa18.23■□□□□ 0.51
SHKBP1-219ENST00000599575 ADGRA3Q8IWK6 1321 aa18.23■□□□□ 0.51
SHKBP1-219ENST00000599575 A0A0U1RQF3 1178 aa18.22■□□□□ 0.51
SHKBP1-219ENST00000599575 A0A1B0GUA9 196 aa18.22■□□□□ 0.51
SHKBP1-219ENST00000599575 SLC16A4O15374 487 aa18.22■□□□□ 0.51
SHKBP1-219ENST00000599575 ZNF623O75123 536 aa18.22■□□□□ 0.51
SHKBP1-219ENST00000599575 PRKCBP05771 671 aa18.22■□□□□ 0.51
SHKBP1-219ENST00000599575 STAG3L1P0CL83 205 aa18.22■□□□□ 0.51
SHKBP1-219ENST00000599575 HOXA11P31270 313 aaPredicted RBP18.22■□□□□ 0.51
SHKBP1-219ENST00000599575 AFMP43652 599 aa18.22■□□□□ 0.51
SHKBP1-219ENST00000599575 SARSP49591 514 aaKnown RBP18.22■□□□□ 0.51
SHKBP1-219ENST00000599575 GTF2BQ00403 316 aa18.22■□□□□ 0.51
SHKBP1-219ENST00000599575 CACNB1Q02641 598 aaPredicted RBP18.22■□□□□ 0.51
SHKBP1-219ENST00000599575 PRPF4BQ13523 1007 aaKnown RBP18.22■□□□□ 0.51
SHKBP1-219ENST00000599575 LRIT3Q3SXY7 679 aa18.22■□□□□ 0.51
SHKBP1-219ENST00000599575 ZPBP2Q6X784 338 aa18.22■□□□□ 0.51
SHKBP1-219ENST00000599575 ZNF720Q7Z2F6 126 aa18.22■□□□□ 0.51
SHKBP1-219ENST00000599575 STAMQ92783 540 aa18.22■□□□□ 0.51
SHKBP1-219ENST00000599575 TOP1MTQ969P6 601 aa18.22■□□□□ 0.51
SHKBP1-219ENST00000599575 MRPL4Q9BYD3 311 aaKnown RBP18.22■□□□□ 0.51
SHKBP1-219ENST00000599575 POLD4Q9HCU8 107 aa18.22■□□□□ 0.51
SHKBP1-219ENST00000599575 HSFX4A0A1B0GTS1 333 aaPredicted RBP18.21■□□□□ 0.51
SHKBP1-219ENST00000599575 HSFX3A0A1B0GWH4 333 aaPredicted RBP18.21■□□□□ 0.51
SHKBP1-219ENST00000599575 LOC101059915A0A1B0GWI6 518 aaPredicted RBP18.21■□□□□ 0.51
SHKBP1-219ENST00000599575 C9IYK1 514 aa18.21■□□□□ 0.51
SHKBP1-219ENST00000599575 N4BP3O15049 544 aa18.21■□□□□ 0.51
SHKBP1-219ENST00000599575 GADD45BO75293 160 aaPredicted RBP18.21■□□□□ 0.51
SHKBP1-219ENST00000599575 NR1I2O75469 434 aa18.21■□□□□ 0.51
SHKBP1-219ENST00000599575 CSDE1O75534 798 aaKnown RBP18.21■□□□□ 0.51
SHKBP1-219ENST00000599575 EOMESO95936 686 aa18.21■□□□□ 0.51
SHKBP1-219ENST00000599575 ATP2A2P16615 1042 aaKnown RBP18.21■□□□□ 0.51
SHKBP1-219ENST00000599575 TWF2Q6IBS0 349 aaKnown RBP18.21■□□□□ 0.51
SHKBP1-219ENST00000599575 SFR1Q86XK3 245 aa18.21■□□□□ 0.51
SHKBP1-219ENST00000599575 FIZ1Q96SL8 496 aa18.21■□□□□ 0.51
SHKBP1-219ENST00000599575 MRPL44Q9H9J2 332 aaKnown RBP18.21■□□□□ 0.51
SHKBP1-219ENST00000599575 CXXC1Q9P0U4 656 aaPredicted RBP18.21■□□□□ 0.51
SHKBP1-219ENST00000599575 COLQQ9Y215 455 aaPredicted RBP18.21■□□□□ 0.51
SHKBP1-219ENST00000599575 K7ENM7 598 aa18.2■□□□□ 0.5
SHKBP1-219ENST00000599575 HOXA2O43364 376 aa18.2■□□□□ 0.5
SHKBP1-219ENST00000599575 SMC2O95347 1197 aa18.2■□□□□ 0.5
SHKBP1-219ENST00000599575 ARF4P18085 180 aaPredicted RBP18.2■□□□□ 0.5
SHKBP1-219ENST00000599575 EHHADHQ08426 723 aa18.2■□□□□ 0.5
SHKBP1-219ENST00000599575 COASYQ13057 564 aa18.2■□□□□ 0.5
SHKBP1-219ENST00000599575 CUL4BQ13620 913 aa18.2■□□□□ 0.5
SHKBP1-219ENST00000599575 KCNB1Q14721 858 aa18.2■□□□□ 0.5
SHKBP1-219ENST00000599575 POSTNQ15063 836 aa18.2■□□□□ 0.5
SHKBP1-219ENST00000599575 TCTN1Q2MV58 587 aa18.2■□□□□ 0.5
SHKBP1-219ENST00000599575 SLC27A1Q6PCB7 646 aa18.2■□□□□ 0.5
SHKBP1-219ENST00000599575 RTN4RL1Q86UN2 441 aaPredicted RBP18.2■□□□□ 0.5
SHKBP1-219ENST00000599575 NPAS4Q8IUM7 802 aa18.2■□□□□ 0.5
SHKBP1-219ENST00000599575 HACE1Q8IYU2 909 aa18.2■□□□□ 0.5
SHKBP1-219ENST00000599575 ADPGKQ9BRR6 497 aa18.2■□□□□ 0.5
SHKBP1-219ENST00000599575 KIFC3Q9BVG8 833 aa18.2■□□□□ 0.5
SHKBP1-219ENST00000599575 STRA6Q9BX79 667 aa18.2■□□□□ 0.5
SHKBP1-219ENST00000599575 LMBRD1Q9NUN5 540 aa18.2■□□□□ 0.5
SHKBP1-219ENST00000599575 RMND1Q9NWS8 449 aa18.2■□□□□ 0.5
SHKBP1-219ENST00000599575 TMEM161AQ9NX61 479 aa18.2■□□□□ 0.5
SHKBP1-219ENST00000599575 TBX20Q9UMR3 447 aa18.2■□□□□ 0.5
SHKBP1-219ENST00000599575 EXOC7Q9UPT5 735 aa18.2■□□□□ 0.5
SHKBP1-219ENST00000599575 TNFSF13BQ9Y275 285 aa18.2■□□□□ 0.5
SHKBP1-219ENST00000599575 SIP14410 1827 aa18.2■□□□□ 0.5
SHKBP1-219ENST00000599575 EIF3DO15371 548 aaKnown RBP eCLIP18.19■□□□□ 0.5
SHKBP1-219ENST00000599575 TOM1L1O75674 476 aa18.19■□□□□ 0.5
SHKBP1-219ENST00000599575 PPP1R37O75864 691 aa18.19■□□□□ 0.5
SHKBP1-219ENST00000599575 PIGRP01833 764 aa18.19■□□□□ 0.5
SHKBP1-219ENST00000599575 LIG1P18858 919 aa18.19■□□□□ 0.5
SHKBP1-219ENST00000599575 FGFR4P22455 802 aa18.19■□□□□ 0.5
SHKBP1-219ENST00000599575 SMAD3P84022 425 aaKnown RBP18.19■□□□□ 0.5
SHKBP1-219ENST00000599575 DPYDQ12882 1025 aa18.19■□□□□ 0.5
SHKBP1-219ENST00000599575 FAM26FQ5R3K3 315 aa18.19■□□□□ 0.5
SHKBP1-219ENST00000599575 MAP4K3Q8IVH8 894 aa18.19■□□□□ 0.5
SHKBP1-219ENST00000599575 CRIPAKQ8N1N5 446 aa18.19■□□□□ 0.5
SHKBP1-219ENST00000599575 LINC01599Q8WXQ3 324 aa18.19■□□□□ 0.5
SHKBP1-219ENST00000599575 PGBD4Q96DM1 585 aa18.19■□□□□ 0.5
SHKBP1-219ENST00000599575 GSDMAQ96QA5 445 aa18.19■□□□□ 0.5
SHKBP1-219ENST00000599575 TMEM206Q9H813 350 aa18.19■□□□□ 0.5
SHKBP1-219ENST00000599575 UBN1Q9NPG3 1134 aa18.19■□□□□ 0.5
SHKBP1-219ENST00000599575 EXOC1Q9NV70 894 aa18.19■□□□□ 0.5
SHKBP1-219ENST00000599575 UBE4BO95155 1302 aa18.19■□□□□ 0.5
SHKBP1-219ENST00000599575 ZMYM2Q9UBW7 1377 aa18.18■□□□□ 0.5
SHKBP1-219ENST00000599575 SCN5AQ14524 2016 aa18.18■□□□□ 0.5
SHKBP1-219ENST00000599575 MGEA5O60502 916 aa18.18■□□□□ 0.5
SHKBP1-219ENST00000599575 KIF20AO95235 890 aa18.18■□□□□ 0.5
SHKBP1-219ENST00000599575 GJB5O95377 273 aa18.18■□□□□ 0.5
SHKBP1-219ENST00000599575 RPN1P04843 607 aaKnown RBP18.18■□□□□ 0.5
SHKBP1-219ENST00000599575 PTMSP20962 102 aa18.18■□□□□ 0.5
SHKBP1-219ENST00000599575 TMEM132AQ24JP5 1023 aa18.18■□□□□ 0.5
SHKBP1-219ENST00000599575 DCAF4L1Q3SXM0 396 aa18.18■□□□□ 0.5
SHKBP1-219ENST00000599575 TPRNQ4KMQ1 711 aa18.18■□□□□ 0.5
SHKBP1-219ENST00000599575 ATF7IP2Q5U623 682 aa18.18■□□□□ 0.5
SHKBP1-219ENST00000599575 LIN28BQ6ZN17 250 aaKnown RBP eCLIP18.18■□□□□ 0.5
SHKBP1-219ENST00000599575 MRPL10Q7Z7H8 261 aaKnown RBP18.18■□□□□ 0.5
SHKBP1-219ENST00000599575 HERC6Q8IVU3 1022 aa18.18■□□□□ 0.5
SHKBP1-219ENST00000599575 MYOCDQ8IZQ8 938 aa18.18■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 91.1 ms