RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 ZNF286BP0CG31 522 aa10.47□□□□□ -0.73
TRIM28-208ENST00000597172 MARK3P27448 753 aa10.47□□□□□ -0.73
TRIM28-208ENST00000597172 CPT1AP50416 773 aa10.47□□□□□ -0.73
TRIM28-208ENST00000597172 HYAL1Q12794 435 aa10.47□□□□□ -0.73
TRIM28-208ENST00000597172 BFSP2Q13515 415 aa10.47□□□□□ -0.73
TRIM28-208ENST00000597172 GIT2Q14161 759 aa10.47□□□□□ -0.73
TRIM28-208ENST00000597172 POSTNQ15063 836 aa10.47□□□□□ -0.73
TRIM28-208ENST00000597172 TARBP2Q15633 366 aaKnown RBP10.47□□□□□ -0.73
TRIM28-208ENST00000597172 ZSCAN23Q3MJ62 389 aa10.47□□□□□ -0.73
TRIM28-208ENST00000597172 PLA2G4FQ68DD2 849 aa10.47□□□□□ -0.73
TRIM28-208ENST00000597172 CNNM4Q6P4Q7 775 aa10.47□□□□□ -0.73
TRIM28-208ENST00000597172 OTUD6AQ7L8S5 288 aa10.47□□□□□ -0.73
TRIM28-208ENST00000597172 ATP8B4Q8TF62 1192 aa10.47□□□□□ -0.73
TRIM28-208ENST00000597172 DNAJC19Q96DA6 116 aa10.47□□□□□ -0.73
TRIM28-208ENST00000597172 RUSC1Q9BVN2 902 aa10.47□□□□□ -0.73
TRIM28-208ENST00000597172 TRIM9Q9C026 710 aa10.47□□□□□ -0.73
TRIM28-208ENST00000597172 GZF1Q9H116 711 aaPredicted RBP10.47□□□□□ -0.73
TRIM28-208ENST00000597172 POLD4Q9HCU8 107 aa10.47□□□□□ -0.73
TRIM28-208ENST00000597172 NRBP2Q9NSY0 501 aa10.47□□□□□ -0.73
TRIM28-208ENST00000597172 KIAA1468Q9P260 1216 aa10.47□□□□□ -0.73
TRIM28-208ENST00000597172 TUBE1Q9UJT0 475 aa10.47□□□□□ -0.73
TRIM28-208ENST00000597172 ABHD14A-ACY1A0A1B0GW23 586 aa10.46□□□□□ -0.73
TRIM28-208ENST00000597172 H3BRB1 525 aa10.46□□□□□ -0.73
TRIM28-208ENST00000597172 HAS3O00219 553 aa10.46□□□□□ -0.73
TRIM28-208ENST00000597172 TBX10O75333 385 aa10.46□□□□□ -0.73
TRIM28-208ENST00000597172 LETM1O95202 739 aaPredicted RBP10.46□□□□□ -0.73
TRIM28-208ENST00000597172 LMNAP02545 664 aaKnown RBP10.46□□□□□ -0.73
TRIM28-208ENST00000597172 MYL3P08590 195 aa10.46□□□□□ -0.73
TRIM28-208ENST00000597172 SLC26A2P50443 739 aa10.46□□□□□ -0.73
TRIM28-208ENST00000597172 PURAQ00577 322 aaKnown RBP10.46□□□□□ -0.73
TRIM28-208ENST00000597172 AMPD3Q01432 767 aa10.46□□□□□ -0.73
TRIM28-208ENST00000597172 RSPO4Q2I0M5 234 aaPredicted RBP10.46□□□□□ -0.73
TRIM28-208ENST00000597172 XKR9Q5GH70 373 aa10.46□□□□□ -0.73
TRIM28-208ENST00000597172 NT5DC1Q5TFE4 455 aa10.46□□□□□ -0.73
TRIM28-208ENST00000597172 PADI6Q6TGC4 694 aa10.46□□□□□ -0.73
TRIM28-208ENST00000597172 DYMQ7RTS9 669 aa10.46□□□□□ -0.73
TRIM28-208ENST00000597172 GPBP1Q86WP2 473 aa10.46□□□□□ -0.73
TRIM28-208ENST00000597172 BBXQ8WY36 941 aaPredicted RBP10.46□□□□□ -0.73
TRIM28-208ENST00000597172 DDX12PQ92771 950 aa10.46□□□□□ -0.73
TRIM28-208ENST00000597172 SYAP1Q96A49 352 aaPredicted RBP10.46□□□□□ -0.73
TRIM28-208ENST00000597172 CEP170P1Q96L14 293 aa10.46□□□□□ -0.73
TRIM28-208ENST00000597172 TUT1Q9H6E5 874 aaKnown RBP10.46□□□□□ -0.73
TRIM28-208ENST00000597172 CYP26B1Q9NR63 512 aa10.46□□□□□ -0.73
TRIM28-208ENST00000597172 ERAP1Q9NZ08 941 aa10.46□□□□□ -0.73
TRIM28-208ENST00000597172 PCDHGC5Q9Y5F6 944 aa10.46□□□□□ -0.73
TRIM28-208ENST00000597172 GCN1Q92616 2671 aaKnown RBP10.46□□□□□ -0.74
TRIM28-208ENST00000597172 SYCE3A1L190 88 aa10.45□□□□□ -0.74
TRIM28-208ENST00000597172 ARHGEF35A5YM69 484 aa10.45□□□□□ -0.74
TRIM28-208ENST00000597172 HBP1O60381 514 aa10.45□□□□□ -0.74
TRIM28-208ENST00000597172 F2P00734 622 aa10.45□□□□□ -0.74
TRIM28-208ENST00000597172 RPN1P04843 607 aaKnown RBP10.45□□□□□ -0.74
TRIM28-208ENST00000597172 MYL1P05976 194 aa10.45□□□□□ -0.74
TRIM28-208ENST00000597172 INSRRP14616 1297 aa10.45□□□□□ -0.74
TRIM28-208ENST00000597172 BMP6P22004 513 aa10.45□□□□□ -0.74
TRIM28-208ENST00000597172 CACNB1Q02641 598 aaPredicted RBP10.45□□□□□ -0.74
TRIM28-208ENST00000597172 EHHADHQ08426 723 aa10.45□□□□□ -0.74
TRIM28-208ENST00000597172 RAD51AP2Q09MP3 1159 aa10.45□□□□□ -0.74
TRIM28-208ENST00000597172 PTPN21Q16825 1174 aa10.45□□□□□ -0.74
TRIM28-208ENST00000597172 MTERF2Q49AM1 385 aa10.45□□□□□ -0.74
TRIM28-208ENST00000597172 KIAA0319Q5VV43 1072 aa10.45□□□□□ -0.74
TRIM28-208ENST00000597172 CNKSR3Q6P9H4 555 aa10.45□□□□□ -0.74
TRIM28-208ENST00000597172 PPP1R13LQ8WUF5 828 aa10.45□□□□□ -0.74
TRIM28-208ENST00000597172 RPGRIP1Q96KN7 1286 aa10.45□□□□□ -0.74
TRIM28-208ENST00000597172 FAM167AQ96KS9 214 aa10.45□□□□□ -0.74
TRIM28-208ENST00000597172 FUCA2Q9BTY2 467 aa10.45□□□□□ -0.74
TRIM28-208ENST00000597172 LRRC27Q9C0I9 530 aa10.45□□□□□ -0.74
TRIM28-208ENST00000597172 SEMA4AQ9H3S1 761 aa10.45□□□□□ -0.74
TRIM28-208ENST00000597172 IGFLR1Q9H665 355 aa10.45□□□□□ -0.74
TRIM28-208ENST00000597172 SEPT9Q9UHD8 586 aaPredicted RBP10.45□□□□□ -0.74
TRIM28-208ENST00000597172 HOOK1Q9UJC3 728 aaKnown RBP10.45□□□□□ -0.74
TRIM28-208ENST00000597172 MAN1B1Q9UKM7 699 aa10.45□□□□□ -0.74
TRIM28-208ENST00000597172 IGKV6-21A0A0C4DH24 114 aa10.44□□□□□ -0.74
TRIM28-208ENST00000597172 PVALEFA0A1B0GWK0 134 aa10.44□□□□□ -0.74
TRIM28-208ENST00000597172 FRMD3A2A2Y4 597 aa10.44□□□□□ -0.74
TRIM28-208ENST00000597172 RSPH10B2B2RC85 870 aa10.44□□□□□ -0.74
TRIM28-208ENST00000597172 KPNA6O60684 536 aa10.44□□□□□ -0.74
TRIM28-208ENST00000597172 EFCAB14O75071 495 aa10.44□□□□□ -0.74
TRIM28-208ENST00000597172 RSPH10BP0C881 870 aa10.44□□□□□ -0.74
TRIM28-208ENST00000597172 GUCY2CP25092 1073 aa10.44□□□□□ -0.74
TRIM28-208ENST00000597172 PSEN2P49810 448 aa10.44□□□□□ -0.74
TRIM28-208ENST00000597172 MAPK7Q13164 816 aa10.44□□□□□ -0.74
TRIM28-208ENST00000597172 ADAM15Q13444 863 aa10.44□□□□□ -0.74
TRIM28-208ENST00000597172 HIC1Q14526 733 aa10.44□□□□□ -0.74
TRIM28-208ENST00000597172 MFSD10Q14728 455 aa10.44□□□□□ -0.74
TRIM28-208ENST00000597172 GPNMBQ14956 572 aa10.44□□□□□ -0.74
TRIM28-208ENST00000597172 KMT5BQ4FZB7 885 aa10.44□□□□□ -0.74
TRIM28-208ENST00000597172 BRDTQ58F21 947 aaPredicted RBP10.44□□□□□ -0.74
TRIM28-208ENST00000597172 FAM47CQ5HY64 1035 aa10.44□□□□□ -0.74
TRIM28-208ENST00000597172 ZNF484Q5JVG2 852 aa10.44□□□□□ -0.74
TRIM28-208ENST00000597172 ISM2Q6H9L7 571 aa10.44□□□□□ -0.74
TRIM28-208ENST00000597172 ASTLQ6HA08 431 aaPredicted RBP10.44□□□□□ -0.74
TRIM28-208ENST00000597172 UNC13DQ70J99 1090 aa10.44□□□□□ -0.74
TRIM28-208ENST00000597172 TMEM192Q8IY95 271 aa10.44□□□□□ -0.74
TRIM28-208ENST00000597172 DAW1Q8N136 415 aa10.44□□□□□ -0.74
TRIM28-208ENST00000597172 TRAPPC12Q8WVT3 735 aa10.44□□□□□ -0.74
TRIM28-208ENST00000597172 SMARCE1Q969G3 411 aa10.44□□□□□ -0.74
TRIM28-208ENST00000597172 CCDC34Q96HJ3 373 aa10.44□□□□□ -0.74
TRIM28-208ENST00000597172 GSDMAQ96QA5 445 aa10.44□□□□□ -0.74
TRIM28-208ENST00000597172 HINFPQ9BQA5 517 aa10.44□□□□□ -0.74
TRIM28-208ENST00000597172 REEP2Q9BRK0 252 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms