RNA–Protein interactions for RNA: ENST00000596104.5

LIG1-209, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 531 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-209ENST00000596104 GVINP1Q7Z2Y8 2422 aa11.17□□□□□ -0.62
LIG1-209ENST00000596104 CNTNAP2Q9UHC6 1331 aa11.17□□□□□ -0.62
LIG1-209ENST00000596104 FAM186AA6NE01 2351 aa11.17□□□□□ -0.62
LIG1-209ENST00000596104 NRP1O14786 923 aa11.17□□□□□ -0.62
LIG1-209ENST00000596104 SLC37A4O43826 429 aa11.17□□□□□ -0.62
LIG1-209ENST00000596104 N4BP1O75113 896 aaKnown RBP11.17□□□□□ -0.62
LIG1-209ENST00000596104 EFEMP2O95967 443 aa11.17□□□□□ -0.62
LIG1-209ENST00000596104 SSBP05455 408 aaKnown RBP eCLIP11.17□□□□□ -0.62
LIG1-209ENST00000596104 KLRC2P26717 231 aa11.17□□□□□ -0.62
LIG1-209ENST00000596104 FOXK2Q01167 660 aa11.17□□□□□ -0.62
LIG1-209ENST00000596104 LETM2Q2VYF4 491 aa11.17□□□□□ -0.62
LIG1-209ENST00000596104 CCDC105Q8IYK2 499 aa11.17□□□□□ -0.62
LIG1-209ENST00000596104 RNF168Q8IYW5 571 aaPredicted RBP11.17□□□□□ -0.62
LIG1-209ENST00000596104 BLIDQ8IZY5 108 aa11.17□□□□□ -0.62
LIG1-209ENST00000596104 ZNF579Q8NAF0 562 aaKnown RBP11.17□□□□□ -0.62
LIG1-209ENST00000596104 DAGLBQ8NCG7 672 aa11.17□□□□□ -0.62
LIG1-209ENST00000596104 CMASQ8NFW8 434 aaPredicted RBP11.17□□□□□ -0.62
LIG1-209ENST00000596104 URGCPQ8TCY9 931 aa11.17□□□□□ -0.62
LIG1-209ENST00000596104 RHOBTB2Q9BYZ6 727 aa11.17□□□□□ -0.62
LIG1-209ENST00000596104 DHX33Q9H6R0 707 aaKnown RBP11.17□□□□□ -0.62
LIG1-209ENST00000596104 MRPL17Q9NRX2 175 aaKnown RBP11.17□□□□□ -0.62
LIG1-209ENST00000596104 MARCH5Q9NX47 278 aa11.17□□□□□ -0.62
LIG1-209ENST00000596104 WRAP73Q9P2S5 460 aaPredicted RBP11.17□□□□□ -0.62
LIG1-209ENST00000596104 VAV3Q9UKW4 847 aa11.17□□□□□ -0.62
LIG1-209ENST00000596104 MYH9P35579 1960 aaKnown RBP11.17□□□□□ -0.62
LIG1-209ENST00000596104 INPPL1O15357 1258 aa11.16□□□□□ -0.62
LIG1-209ENST00000596104 PAPLNO95428 1278 aa11.16□□□□□ -0.62
LIG1-209ENST00000596104 POMCP01189 267 aa11.16□□□□□ -0.62
LIG1-209ENST00000596104 SOD2P04179 222 aa11.16□□□□□ -0.62
LIG1-209ENST00000596104 ALDH2P05091 517 aa11.16□□□□□ -0.62
LIG1-209ENST00000596104 NCLP19338 710 aaKnown RBP11.16□□□□□ -0.62
LIG1-209ENST00000596104 QARSP47897 775 aaKnown RBP11.16□□□□□ -0.62
LIG1-209ENST00000596104 PPP2R5CQ13362 524 aa11.16□□□□□ -0.62
LIG1-209ENST00000596104 TOB2Q14106 344 aaPredicted RBP11.16□□□□□ -0.62
LIG1-209ENST00000596104 TAS1R1Q7RTX1 841 aa11.16□□□□□ -0.62
LIG1-209ENST00000596104 SRGAP1Q7Z6B7 1085 aa11.16□□□□□ -0.62
LIG1-209ENST00000596104 SIX5Q8N196 739 aa11.16□□□□□ -0.62
LIG1-209ENST00000596104 PRPF31Q8WWY3 499 aaKnown RBP11.16□□□□□ -0.62
LIG1-209ENST00000596104 PSPC1Q8WXF1 523 aaKnown RBP11.16□□□□□ -0.62
LIG1-209ENST00000596104 SLC7A3Q8WY07 619 aa11.16□□□□□ -0.62
LIG1-209ENST00000596104 TMEM143Q96AN5 459 aa11.16□□□□□ -0.62
LIG1-209ENST00000596104 RPS6KC1Q96S38 1066 aa11.16□□□□□ -0.62
LIG1-209ENST00000596104 RTP3Q9BQQ7 232 aa11.16□□□□□ -0.62
LIG1-209ENST00000596104 HERC2P3Q9BVR0 1158 aa11.16□□□□□ -0.62
LIG1-209ENST00000596104 KCNMB3Q9NPA1 279 aa11.16□□□□□ -0.62
LIG1-209ENST00000596104 MAN1C1Q9NR34 630 aa11.16□□□□□ -0.62
LIG1-209ENST00000596104 IGSF9Q9P2J2 1179 aa11.16□□□□□ -0.62
LIG1-209ENST00000596104 KANSL3Q9P2N6 904 aa11.16□□□□□ -0.62
LIG1-209ENST00000596104 DDX25Q9UHL0 483 aaKnown RBP11.16□□□□□ -0.62
LIG1-209ENST00000596104 FAN1Q9Y2M0 1017 aa11.16□□□□□ -0.62
LIG1-209ENST00000596104 PPME1Q9Y570 386 aa11.16□□□□□ -0.62
LIG1-209ENST00000596104 SPTBN4Q9H254 2564 aa11.16□□□□□ -0.62
LIG1-209ENST00000596104 MYO15AQ9UKN7 3530 aa11.15□□□□□ -0.62
LIG1-209ENST00000596104 SPDYE4A6NLX3 237 aa11.15□□□□□ -0.62
LIG1-209ENST00000596104 C2CD2LO14523 706 aa11.15□□□□□ -0.62
LIG1-209ENST00000596104 TEX28O15482 410 aa11.15□□□□□ -0.62
LIG1-209ENST00000596104 NARSO43776 548 aaKnown RBP11.15□□□□□ -0.62
LIG1-209ENST00000596104 DEXIO95424 95 aa11.15□□□□□ -0.62
LIG1-209ENST00000596104 URODP06132 367 aa11.15□□□□□ -0.62
LIG1-209ENST00000596104 AK2P54819 239 aa11.15□□□□□ -0.62
LIG1-209ENST00000596104 DSC1Q08554 894 aa11.15□□□□□ -0.62
LIG1-209ENST00000596104 SSRP1Q08945 709 aaKnown RBP11.15□□□□□ -0.62
LIG1-209ENST00000596104 LAMTOR4Q0VGL1 99 aa11.15□□□□□ -0.62
LIG1-209ENST00000596104 NONOQ15233 471 aaKnown RBP eCLIP11.15□□□□□ -0.62
LIG1-209ENST00000596104 ANGPT1Q15389 498 aa11.15□□□□□ -0.62
LIG1-209ENST00000596104 INF2Q27J81 1249 aa11.15□□□□□ -0.62
LIG1-209ENST00000596104 KIAA0319Q5VV43 1072 aa11.15□□□□□ -0.62
LIG1-209ENST00000596104 GALNT17Q6IS24 598 aa11.15□□□□□ -0.62
LIG1-209ENST00000596104 CYP26C1Q6V0L0 522 aa11.15□□□□□ -0.62
LIG1-209ENST00000596104 CENPQQ7L2Z9 268 aaPredicted RBP11.15□□□□□ -0.62
LIG1-209ENST00000596104 COLGALT2Q8IYK4 626 aa11.15□□□□□ -0.62
LIG1-209ENST00000596104 TRIM22Q8IYM9 498 aa11.15□□□□□ -0.62
LIG1-209ENST00000596104 FAM177A1Q8N128 213 aaPredicted RBP11.15□□□□□ -0.62
LIG1-209ENST00000596104 ADSSL1Q8N142 457 aa11.15□□□□□ -0.62
LIG1-209ENST00000596104 DTWD2Q8NBA8 298 aa11.15□□□□□ -0.62
LIG1-209ENST00000596104 SMG8Q8ND04 991 aaKnown RBP11.15□□□□□ -0.62
LIG1-209ENST00000596104 RSAD2Q8WXG1 361 aa11.15□□□□□ -0.62
LIG1-209ENST00000596104 CEP170P1Q96L14 293 aa11.15□□□□□ -0.62
LIG1-209ENST00000596104 AIFM3Q96NN9 605 aa11.15□□□□□ -0.62
LIG1-209ENST00000596104 RXFP1Q9HBX9 757 aa11.15□□□□□ -0.62
LIG1-209ENST00000596104 WDR6Q9NNW5 1121 aaKnown RBP11.15□□□□□ -0.62
LIG1-209ENST00000596104 FBXL21Q9UKT6 434 aa11.15□□□□□ -0.62
LIG1-209ENST00000596104 PRG3Q9Y2Y8 225 aaPredicted RBP11.15□□□□□ -0.62
LIG1-209ENST00000596104 MYO10Q9HD67 2058 aa11.15□□□□□ -0.63
LIG1-209ENST00000596104 DENND4AQ7Z401 1863 aa11.15□□□□□ -0.63
LIG1-209ENST00000596104 CLUHO75153 1309 aa11.14□□□□□ -0.63
LIG1-209ENST00000596104 CCDC195A0A1B0GUA6 201 aa11.14□□□□□ -0.63
LIG1-209ENST00000596104 KRBA1A5PL33 1030 aa11.14□□□□□ -0.63
LIG1-209ENST00000596104 F8W810 466 aa11.14□□□□□ -0.63
LIG1-209ENST00000596104 DKC1O60832 514 aaKnown RBP eCLIP11.14□□□□□ -0.631e-6■■□□□ 12.5
LIG1-209ENST00000596104 RFPL2O75678 378 aa11.14□□□□□ -0.63
LIG1-209ENST00000596104 P4HBP07237 508 aaKnown RBP11.14□□□□□ -0.63
LIG1-209ENST00000596104 ADH1AP07327 375 aa11.14□□□□□ -0.63
LIG1-209ENST00000596104 SRGAP2CP0DJJ0 459 aa11.14□□□□□ -0.63
LIG1-209ENST00000596104 PSMA5P28066 241 aa11.14□□□□□ -0.63
LIG1-209ENST00000596104 RFC5P40937 340 aa11.14□□□□□ -0.63
LIG1-209ENST00000596104 KRT25Q7Z3Z0 450 aa11.14□□□□□ -0.63
LIG1-209ENST00000596104 FERMT3Q86UX7 667 aa11.14□□□□□ -0.63
LIG1-209ENST00000596104 C4orf19Q8IY42 314 aa11.14□□□□□ -0.63
LIG1-209ENST00000596104 EXOC8Q8IYI6 725 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms