RNA–Protein interactions for RNA: ENST00000595523.5

SHKBP1-206, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-206ENST00000595523 NT5C3AQ9H0P0 336 aa12.16□□□□□ -0.46
SHKBP1-206ENST00000595523 CSRNP2Q9H175 543 aa12.16□□□□□ -0.46
SHKBP1-206ENST00000595523 FZD8Q9H461 694 aa12.16□□□□□ -0.46
SHKBP1-206ENST00000595523 ALG13Q9NP73 1137 aaKnown RBP12.16□□□□□ -0.46
SHKBP1-206ENST00000595523 BLOC1S4Q9NUP1 217 aa12.16□□□□□ -0.46
SHKBP1-206ENST00000595523 PLAGL2Q9UPG8 496 aa12.16□□□□□ -0.46
SHKBP1-206ENST00000595523 USP20Q9Y2K6 914 aa12.16□□□□□ -0.46
SHKBP1-206ENST00000595523 MORC2Q9Y6X9 1032 aaPredicted RBP12.16□□□□□ -0.46
SHKBP1-206ENST00000595523 CNTNAP2Q9UHC6 1331 aa12.15□□□□□ -0.46
SHKBP1-206ENST00000595523 SLC26A4O43511 780 aa12.15□□□□□ -0.46
SHKBP1-206ENST00000595523 B4GALT3O60512 393 aa12.15□□□□□ -0.46
SHKBP1-206ENST00000595523 HIP1RO75146 1068 aa12.15□□□□□ -0.46
SHKBP1-206ENST00000595523 PLA2G4BP0C869 781 aa12.15□□□□□ -0.46
SHKBP1-206ENST00000595523 SKIP12755 728 aa12.15□□□□□ -0.46
SHKBP1-206ENST00000595523 PLCG1P19174 1290 aa12.15□□□□□ -0.46
SHKBP1-206ENST00000595523 AXLP30530 894 aa12.15□□□□□ -0.46
SHKBP1-206ENST00000595523 PBX3P40426 434 aa12.15□□□□□ -0.46
SHKBP1-206ENST00000595523 NASPP49321 788 aaPredicted RBP12.15□□□□□ -0.46
SHKBP1-206ENST00000595523 AFF1P51825 1210 aaKnown RBP12.15□□□□□ -0.46
SHKBP1-206ENST00000595523 SLC39A14Q15043 492 aa12.15□□□□□ -0.46
SHKBP1-206ENST00000595523 KARSQ15046 597 aaKnown RBP12.15□□□□□ -0.46
SHKBP1-206ENST00000595523 FAM187BQ17R55 369 aa12.15□□□□□ -0.46
SHKBP1-206ENST00000595523 ARSHQ5FYA8 562 aa12.15□□□□□ -0.46
SHKBP1-206ENST00000595523 FOXD4L5Q5VV16 416 aaPredicted RBP12.15□□□□□ -0.46
SHKBP1-206ENST00000595523 NOTUMQ6P988 496 aa12.15□□□□□ -0.46
SHKBP1-206ENST00000595523 CDR2LQ86X02 465 aaPredicted RBP12.15□□□□□ -0.46
SHKBP1-206ENST00000595523 LRRC43Q8N309 656 aa12.15□□□□□ -0.46
SHKBP1-206ENST00000595523 KCTD17Q8N5Z5 321 aa12.15□□□□□ -0.46
SHKBP1-206ENST00000595523 SPPL3Q8TCT6 385 aa12.15□□□□□ -0.46
SHKBP1-206ENST00000595523 FOXD4L4Q8WXT5 416 aaPredicted RBP12.15□□□□□ -0.46
SHKBP1-206ENST00000595523 EPSTI1Q96J88 318 aa12.15□□□□□ -0.46
SHKBP1-206ENST00000595523 CLIC6Q96NY7 704 aa12.15□□□□□ -0.46
SHKBP1-206ENST00000595523 HES2Q9Y543 173 aa12.15□□□□□ -0.46
SHKBP1-206ENST00000595523 SRPRBQ9Y5M8 271 aaKnown RBP12.15□□□□□ -0.46
SHKBP1-206ENST00000595523 NPHP3-ACAD11A0A0J9YXS1 232 aa12.14□□□□□ -0.47
SHKBP1-206ENST00000595523 A0A1B0GUA9 196 aa12.14□□□□□ -0.47
SHKBP1-206ENST00000595523 OFD1O75665 1012 aa12.14□□□□□ -0.47
SHKBP1-206ENST00000595523 F13A1P00488 732 aa12.14□□□□□ -0.47
SHKBP1-206ENST00000595523 HSP90AA1P07900 732 aaKnown RBP12.14□□□□□ -0.47
SHKBP1-206ENST00000595523 ZSCAN22P10073 491 aaPredicted RBP12.14□□□□□ -0.47
SHKBP1-206ENST00000595523 NCLP19338 710 aaKnown RBP12.14□□□□□ -0.47
SHKBP1-206ENST00000595523 GUCY2CP25092 1073 aa12.14□□□□□ -0.47
SHKBP1-206ENST00000595523 UBA7P41226 1012 aa12.14□□□□□ -0.47
SHKBP1-206ENST00000595523 RAD51AP2Q09MP3 1159 aa12.14□□□□□ -0.47
SHKBP1-206ENST00000595523 PPP2R5AQ15172 486 aa12.14□□□□□ -0.47
SHKBP1-206ENST00000595523 NAALADL2Q58DX5 795 aa12.14□□□□□ -0.47
SHKBP1-206ENST00000595523 ZBTB8OSQ8IWT0 167 aa12.14□□□□□ -0.47
SHKBP1-206ENST00000595523 ABI1Q8IZP0 508 aa12.14□□□□□ -0.47
SHKBP1-206ENST00000595523 DEPTORQ8TB45 409 aa12.14□□□□□ -0.47
SHKBP1-206ENST00000595523 CCDC51Q96ER9 411 aa12.14□□□□□ -0.47
SHKBP1-206ENST00000595523 CDK5RAP3Q96JB5 506 aa12.14□□□□□ -0.47
SHKBP1-206ENST00000595523 PRIMPOLQ96LW4 560 aa12.14□□□□□ -0.47
SHKBP1-206ENST00000595523 CCSER1Q9C0I3 900 aa12.14□□□□□ -0.47
SHKBP1-206ENST00000595523 LMAN2LQ9H0V9 348 aa12.14□□□□□ -0.47
SHKBP1-206ENST00000595523 C2orf40Q9H1Z8 148 aa12.14□□□□□ -0.47
SHKBP1-206ENST00000595523 RNF39Q9H2S5 420 aa12.14□□□□□ -0.47
SHKBP1-206ENST00000595523 NXF3Q9H4D5 531 aaKnown RBP12.14□□□□□ -0.47
SHKBP1-206ENST00000595523 PDZD7Q9H5P4 517 aa12.14□□□□□ -0.47
SHKBP1-206ENST00000595523 PRMT7Q9NVM4 692 aaPredicted RBP12.14□□□□□ -0.47
SHKBP1-206ENST00000595523 IPPQ9Y573 584 aa12.14□□□□□ -0.47
SHKBP1-206ENST00000595523 ANK1P16157 1881 aa12.13□□□□□ -0.47
SHKBP1-206ENST00000595523 SFI1A8K8P3 1242 aa12.13□□□□□ -0.47
SHKBP1-206ENST00000595523 ACKR2O00590 384 aa12.13□□□□□ -0.47
SHKBP1-206ENST00000595523 CSPG5O95196 566 aa12.13□□□□□ -0.47
SHKBP1-206ENST00000595523 SSBP05455 408 aaKnown RBP eCLIP12.13□□□□□ -0.47
SHKBP1-206ENST00000595523 PRKCBP05771 671 aa12.13□□□□□ -0.47
SHKBP1-206ENST00000595523 LAG3P18627 525 aa12.13□□□□□ -0.47
SHKBP1-206ENST00000595523 IRS1P35568 1242 aa12.13□□□□□ -0.47
SHKBP1-206ENST00000595523 NPTX2P47972 431 aa12.13□□□□□ -0.47
SHKBP1-206ENST00000595523 PEX3P56589 373 aa12.13□□□□□ -0.47
SHKBP1-206ENST00000595523 CACNB1Q02641 598 aaPredicted RBP12.13□□□□□ -0.47
SHKBP1-206ENST00000595523 PTPROQ16827 1216 aa12.13□□□□□ -0.47
SHKBP1-206ENST00000595523 TCEAL5Q5H9L2 206 aa12.13□□□□□ -0.47
SHKBP1-206ENST00000595523 NOMO2Q5JPE7 1267 aa12.13□□□□□ -0.47
SHKBP1-206ENST00000595523 SPOUT1Q5T280 376 aaKnown RBP12.13□□□□□ -0.47
SHKBP1-206ENST00000595523 EEF1DP3Q658K8 133 aa12.13□□□□□ -0.47
SHKBP1-206ENST00000595523 SLC27A1Q6PCB7 646 aa12.13□□□□□ -0.47
SHKBP1-206ENST00000595523 KCNT2Q6UVM3 1135 aa12.13□□□□□ -0.47
SHKBP1-206ENST00000595523 TAS1R3Q7RTX0 852 aa12.13□□□□□ -0.47
SHKBP1-206ENST00000595523 LINC00301Q8NCQ3 95 aa12.13□□□□□ -0.47
SHKBP1-206ENST00000595523 POF1BQ8WVV4 589 aa12.13□□□□□ -0.47
SHKBP1-206ENST00000595523 RAD54LQ92698 747 aa12.13□□□□□ -0.47
SHKBP1-206ENST00000595523 SYMPKQ92797 1274 aaKnown RBP12.13□□□□□ -0.47
SHKBP1-206ENST00000595523 CALML4Q96GE6 196 aa12.13□□□□□ -0.47
SHKBP1-206ENST00000595523 IFT74Q96LB3 600 aa12.13□□□□□ -0.47
SHKBP1-206ENST00000595523 MRPL9Q9BYD2 267 aaKnown RBP12.13□□□□□ -0.47
SHKBP1-206ENST00000595523 RSAD1Q9HA92 442 aa12.13□□□□□ -0.47
SHKBP1-206ENST00000595523 TBC1D13Q9NVG8 400 aa12.13□□□□□ -0.47
SHKBP1-206ENST00000595523 ARHGAP28Q9P2N2 729 aa12.13□□□□□ -0.47
SHKBP1-206ENST00000595523 THEGQ9P2T0 379 aa12.13□□□□□ -0.47
SHKBP1-206ENST00000595523 TFIP11Q9UBB9 837 aaKnown RBP12.13□□□□□ -0.47
SHKBP1-206ENST00000595523 INPP5FQ9Y2H2 1132 aa12.13□□□□□ -0.47
SHKBP1-206ENST00000595523 PCDHB12Q9Y5F1 795 aa12.13□□□□□ -0.47
SHKBP1-206ENST00000595523 PCDHGC5Q9Y5F6 944 aa12.13□□□□□ -0.47
SHKBP1-206ENST00000595523 VWA8A3KMH1 1905 aa12.12□□□□□ -0.47
SHKBP1-206ENST00000595523 A0A087X0B3 334 aa12.12□□□□□ -0.47
SHKBP1-206ENST00000595523 INPPL1O15357 1258 aa12.12□□□□□ -0.47
SHKBP1-206ENST00000595523 FGF18O76093 207 aa12.12□□□□□ -0.47
SHKBP1-206ENST00000595523 NPTXRO95502 500 aa12.12□□□□□ -0.47
SHKBP1-206ENST00000595523 TFF2Q03403 129 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms