RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 IGFBP4P22692 258 aa16.08■□□□□ 0.16
VRK3-206ENST00000594090 CTNNB1P35222 781 aa16.08■□□□□ 0.16
VRK3-206ENST00000594090 NPTX2P47972 431 aa16.08■□□□□ 0.16
VRK3-206ENST00000594090 DHX8Q14562 1220 aaKnown RBP16.08■□□□□ 0.16
VRK3-206ENST00000594090 MCM6Q14566 821 aa16.08■□□□□ 0.16
VRK3-206ENST00000594090 MAPK6Q16659 721 aa16.08■□□□□ 0.16
VRK3-206ENST00000594090 ARSHQ5FYA8 562 aa16.08■□□□□ 0.16
VRK3-206ENST00000594090 CLLU1OSQ5K130 101 aa16.08■□□□□ 0.16
VRK3-206ENST00000594090 ABI1Q8IZP0 508 aa16.08■□□□□ 0.16
VRK3-206ENST00000594090 CASD1Q96PB1 797 aa16.08■□□□□ 0.16
VRK3-206ENST00000594090 FZD8Q9H461 694 aa16.08■□□□□ 0.16
VRK3-206ENST00000594090 C17orf75Q9HAS0 396 aa16.08■□□□□ 0.16
VRK3-206ENST00000594090 CFAP45Q9UL16 551 aa16.08■□□□□ 0.16
VRK3-206ENST00000594090 MYH11P35749 1972 aa16.08■□□□□ 0.16
VRK3-206ENST00000594090 CNTNAP2Q9UHC6 1331 aa16.07■□□□□ 0.16
VRK3-206ENST00000594090 NPHP3-ACAD11A0A0J9YXS1 232 aa16.07■□□□□ 0.16
VRK3-206ENST00000594090 CCDC169A6NNP5 214 aa16.07■□□□□ 0.16
VRK3-206ENST00000594090 MEIS3P2A8K0S8 358 aa16.07■□□□□ 0.16
VRK3-206ENST00000594090 SFI1A8K8P3 1242 aa16.07■□□□□ 0.16
VRK3-206ENST00000594090 C5orf67F2Z3F1 127 aa16.07■□□□□ 0.16
VRK3-206ENST00000594090 CUTAO60888 179 aa16.07■□□□□ 0.16
VRK3-206ENST00000594090 PRKCBP05771 671 aa16.07■□□□□ 0.16
VRK3-206ENST00000594090 EFNA5P52803 228 aa16.07■□□□□ 0.16
VRK3-206ENST00000594090 NAALADL2Q58DX5 795 aa16.07■□□□□ 0.16
VRK3-206ENST00000594090 MAFAQ8NHW3 353 aaPredicted RBP16.07■□□□□ 0.16
VRK3-206ENST00000594090 HELQQ8TDG4 1101 aa16.07■□□□□ 0.16
VRK3-206ENST00000594090 LPPQ93052 612 aa16.07■□□□□ 0.16
VRK3-206ENST00000594090 REEP2Q9BRK0 252 aa16.07■□□□□ 0.16
VRK3-206ENST00000594090 EIF2AQ9BY44 585 aaKnown RBP16.07■□□□□ 0.16
VRK3-206ENST00000594090 ARHGAP28Q9P2N2 729 aa16.07■□□□□ 0.16
VRK3-206ENST00000594090 HCSTQ9UBK5 93 aa16.07■□□□□ 0.16
VRK3-206ENST00000594090 ODF2LQ9ULJ1 636 aa16.07■□□□□ 0.16
VRK3-206ENST00000594090 PHLPP2Q6ZVD8 1323 aa16.07■□□□□ 0.16
VRK3-206ENST00000594090 A0A087X0B3 334 aa16.06■□□□□ 0.16
VRK3-206ENST00000594090 TTLL13PA6NNM8 815 aa16.06■□□□□ 0.16
VRK3-206ENST00000594090 EDN1P05305 212 aa16.06■□□□□ 0.16
VRK3-206ENST00000594090 PLS3P13797 630 aa16.06■□□□□ 0.16
VRK3-206ENST00000594090 LIG1P18858 919 aa16.06■□□□□ 0.16
VRK3-206ENST00000594090 POU3F3P20264 500 aaPredicted RBP16.06■□□□□ 0.16
VRK3-206ENST00000594090 DDIT3P35638 169 aa16.06■□□□□ 0.16
VRK3-206ENST00000594090 BMPR1AP36894 532 aa16.06■□□□□ 0.16
VRK3-206ENST00000594090 CACNB1Q02641 598 aaPredicted RBP16.06■□□□□ 0.16
VRK3-206ENST00000594090 LONRF3Q496Y0 759 aa16.06■□□□□ 0.16
VRK3-206ENST00000594090 RRAGBQ5VZM2 374 aa16.06■□□□□ 0.16
VRK3-206ENST00000594090 CDR2LQ86X02 465 aaPredicted RBP16.06■□□□□ 0.16
VRK3-206ENST00000594090 LRRC43Q8N309 656 aa16.06■□□□□ 0.16
VRK3-206ENST00000594090 PGBD4Q96DM1 585 aa16.06■□□□□ 0.16
VRK3-206ENST00000594090 KMT5AQ9NQR1 393 aa16.06■□□□□ 0.16
VRK3-206ENST00000594090 IPPQ9Y573 584 aa16.06■□□□□ 0.16
VRK3-206ENST00000594090 A0A1B0GUA9 196 aa16.05■□□□□ 0.16
VRK3-206ENST00000594090 H3BNC9 293 aa16.05■□□□□ 0.16
VRK3-206ENST00000594090 ACKR2O00590 384 aa16.05■□□□□ 0.16
VRK3-206ENST00000594090 GTPBP6O43824 516 aaPredicted RBP16.05■□□□□ 0.16
VRK3-206ENST00000594090 RB1P06400 928 aa16.05■□□□□ 0.16
VRK3-206ENST00000594090 NCLP19338 710 aaKnown RBP16.05■□□□□ 0.16
VRK3-206ENST00000594090 STAT6P42226 847 aa16.05■□□□□ 0.16
VRK3-206ENST00000594090 ME1P48163 572 aa16.05■□□□□ 0.16
VRK3-206ENST00000594090 PRPF4BQ13523 1007 aaKnown RBP16.05■□□□□ 0.16
VRK3-206ENST00000594090 AXDND1Q5T1B0 1012 aaPredicted RBP16.05■□□□□ 0.16
VRK3-206ENST00000594090 SLC27A1Q6PCB7 646 aa16.05■□□□□ 0.16
VRK3-206ENST00000594090 SHC4Q6S5L8 630 aa16.05■□□□□ 0.16
VRK3-206ENST00000594090 GLB1LQ6UWU2 654 aa16.05■□□□□ 0.16
VRK3-206ENST00000594090 AGMOQ6ZNB7 445 aa16.05■□□□□ 0.16
VRK3-206ENST00000594090 CCDC73Q6ZRK6 1079 aa16.05■□□□□ 0.16
VRK3-206ENST00000594090 MRPL10Q7Z7H8 261 aaKnown RBP16.05■□□□□ 0.16
VRK3-206ENST00000594090 SMG8Q8ND04 991 aaKnown RBP16.05■□□□□ 0.16
VRK3-206ENST00000594090 CNNM3Q8NE01 707 aa16.05■□□□□ 0.16
VRK3-206ENST00000594090 RSPH1Q8WYR4 309 aa16.05■□□□□ 0.16
VRK3-206ENST00000594090 C11orf84Q9BUA3 381 aaPredicted RBP16.05■□□□□ 0.16
VRK3-206ENST00000594090 PLVAPQ9BX97 442 aa16.05■□□□□ 0.16
VRK3-206ENST00000594090 TMEM134Q9H6X4 195 aa16.05■□□□□ 0.16
VRK3-206ENST00000594090 CWH43Q9H720 699 aa16.05■□□□□ 0.16
VRK3-206ENST00000594090 TYW1Q9NV66 732 aaKnown RBP16.05■□□□□ 0.16
VRK3-206ENST00000594090 RCOR1Q9UKL0 485 aa16.05■□□□□ 0.16
VRK3-206ENST00000594090 MTCH2Q9Y6C9 303 aa16.05■□□□□ 0.16
VRK3-206ENST00000594090 K7ERI5 159 aa16.04■□□□□ 0.16
VRK3-206ENST00000594090 N4BP3O15049 544 aa16.04■□□□□ 0.16
VRK3-206ENST00000594090 SLC16A4O15374 487 aa16.04■□□□□ 0.16
VRK3-206ENST00000594090 KRT18P05783 430 aaKnown RBP16.04■□□□□ 0.16
VRK3-206ENST00000594090 KRT85P78386 507 aa16.04■□□□□ 0.16
VRK3-206ENST00000594090 GPM6BQ13491 265 aa16.04■□□□□ 0.16
VRK3-206ENST00000594090 TMEM132AQ24JP5 1023 aa16.04■□□□□ 0.16
VRK3-206ENST00000594090 SPOUT1Q5T280 376 aaKnown RBP16.04■□□□□ 0.16
VRK3-206ENST00000594090 LRRC55Q6ZSA7 311 aa16.04■□□□□ 0.16
VRK3-206ENST00000594090 TAS1R3Q7RTX0 852 aa16.04■□□□□ 0.16
VRK3-206ENST00000594090 SPIRE2Q8WWL2 714 aa16.04■□□□□ 0.16
VRK3-206ENST00000594090 CHAMP1Q96JM3 812 aa16.04■□□□□ 0.16
VRK3-206ENST00000594090 NTPCRQ9BSD7 190 aaKnown RBP16.04■□□□□ 0.16
VRK3-206ENST00000594090 MRPL9Q9BYD2 267 aaKnown RBP16.04■□□□□ 0.16
VRK3-206ENST00000594090 TRIM6Q9C030 488 aaPredicted RBP16.04■□□□□ 0.16
VRK3-206ENST00000594090 NXF3Q9H4D5 531 aaKnown RBP16.04■□□□□ 0.16
VRK3-206ENST00000594090 PDZD7Q9H5P4 517 aa16.04■□□□□ 0.16
VRK3-206ENST00000594090 LARSQ9P2J5 1176 aaKnown RBP16.04■□□□□ 0.16
VRK3-206ENST00000594090 PCDHA7Q9UN72 937 aa16.04■□□□□ 0.16
VRK3-206ENST00000594090 USP20Q9Y2K6 914 aa16.04■□□□□ 0.16
VRK3-206ENST00000594090 RBM19Q9Y4C8 960 aaKnown RBP16.04■□□□□ 0.16
VRK3-206ENST00000594090 ATP6V1DQ9Y5K8 247 aa16.04■□□□□ 0.16
VRK3-206ENST00000594090 MYO9BQ13459 2157 aa16.03■□□□□ 0.16
VRK3-206ENST00000594090 FAM13AO94988 1023 aa16.03■□□□□ 0.16
VRK3-206ENST00000594090 NPTXRO95502 500 aa16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 163 ms