RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 OFD1O75665 1012 aa16.92■□□□□ 0.3
TRIM28-203ENST00000593582 CYP11B2P19099 503 aa16.92■□□□□ 0.3
TRIM28-203ENST00000593582 GTF2F1P35269 517 aaKnown RBP eCLIP16.92■□□□□ 0.31e-6■■□□□ 14.1
TRIM28-203ENST00000593582 LTBRP36941 435 aa16.92■□□□□ 0.3
TRIM28-203ENST00000593582 NRIP1P48552 1158 aa16.92■□□□□ 0.3
TRIM28-203ENST00000593582 ERVFC1P60507 584 aa16.92■□□□□ 0.3
TRIM28-203ENST00000593582 ADAM15Q13444 863 aa16.92■□□□□ 0.3
TRIM28-203ENST00000593582 ECM1Q16610 540 aa16.92■□□□□ 0.3
TRIM28-203ENST00000593582 UBXN11Q5T124 520 aa16.92■□□□□ 0.3
TRIM28-203ENST00000593582 ADGRD2Q7Z7M1 963 aa16.92■□□□□ 0.3
TRIM28-203ENST00000593582 RBM23Q86U06 439 aaKnown RBP16.92■□□□□ 0.3
TRIM28-203ENST00000593582 ZBTB8OSQ8IWT0 167 aa16.92■□□□□ 0.3
TRIM28-203ENST00000593582 CPB2Q96IY4 423 aa16.92■□□□□ 0.3
TRIM28-203ENST00000593582 TCF25Q9BQ70 676 aa16.92■□□□□ 0.3
TRIM28-203ENST00000593582 BHMT2Q9H2M3 363 aa16.92■□□□□ 0.3
TRIM28-203ENST00000593582 RSAD1Q9HA92 442 aa16.92■□□□□ 0.3
TRIM28-203ENST00000593582 NGRNQ9NPE2 291 aaKnown RBP16.92■□□□□ 0.3
TRIM28-203ENST00000593582 UBN1Q9NPG3 1134 aa16.92■□□□□ 0.3
TRIM28-203ENST00000593582 ENTPD7Q9NQZ7 604 aa16.92■□□□□ 0.3
TRIM28-203ENST00000593582 DDX19AQ9NUU7 478 aaKnown RBP16.92■□□□□ 0.3
TRIM28-203ENST00000593582 TBC1D13Q9NVG8 400 aa16.92■□□□□ 0.3
TRIM28-203ENST00000593582 PCDHGC5Q9Y5F6 944 aa16.92■□□□□ 0.3
TRIM28-203ENST00000593582 CNTNAP2Q9UHC6 1331 aa16.92■□□□□ 0.3
TRIM28-203ENST00000593582 MYO7AQ13402 2215 aa16.92■□□□□ 0.3
TRIM28-203ENST00000593582 FSD2A1L4K1 749 aa16.91■□□□□ 0.3
TRIM28-203ENST00000593582 NCLP19338 710 aaKnown RBP16.91■□□□□ 0.3
TRIM28-203ENST00000593582 NDUFV1P49821 464 aa16.91■□□□□ 0.3
TRIM28-203ENST00000593582 ATP2C1P98194 919 aaPredicted RBP16.91■□□□□ 0.3
TRIM28-203ENST00000593582 CUL4AQ13619 759 aa16.91■□□□□ 0.3
TRIM28-203ENST00000593582 IL17AQ16552 155 aa16.91■□□□□ 0.3
TRIM28-203ENST00000593582 AMHR2Q16671 573 aa16.91■□□□□ 0.3
TRIM28-203ENST00000593582 AGMOQ6ZNB7 445 aa16.91■□□□□ 0.3
TRIM28-203ENST00000593582 HACE1Q8IYU2 909 aa16.91■□□□□ 0.3
TRIM28-203ENST00000593582 SLC39A11Q8N1S5 342 aa16.91■□□□□ 0.3
TRIM28-203ENST00000593582 EFHBQ8N7U6 833 aa16.91■□□□□ 0.3
TRIM28-203ENST00000593582 TMEM169Q96HH4 297 aa16.91■□□□□ 0.3
TRIM28-203ENST00000593582 TRIM6Q9C030 488 aaPredicted RBP16.91■□□□□ 0.3
TRIM28-203ENST00000593582 CSRNP2Q9H175 543 aa16.91■□□□□ 0.3
TRIM28-203ENST00000593582 C2orf40Q9H1Z8 148 aa16.91■□□□□ 0.3
TRIM28-203ENST00000593582 KANSL3Q9P2N6 904 aa16.91■□□□□ 0.3
TRIM28-203ENST00000593582 DNM3Q9UQ16 869 aa16.91■□□□□ 0.3
TRIM28-203ENST00000593582 IPPQ9Y573 584 aa16.91■□□□□ 0.3
TRIM28-203ENST00000593582 TCF20Q9UGU0 1960 aaKnown RBP16.91■□□□□ 0.3
TRIM28-203ENST00000593582 BDP1A6H8Y1 2624 aa16.9■□□□□ 0.3
TRIM28-203ENST00000593582 PP2D1A8MPX8 630 aa16.9■□□□□ 0.3
TRIM28-203ENST00000593582 FSCN2O14926 492 aa16.9■□□□□ 0.3
TRIM28-203ENST00000593582 LINC01565O15544 149 aa16.9■□□□□ 0.3
TRIM28-203ENST00000593582 ITGA4P13612 1032 aa16.9■□□□□ 0.3
TRIM28-203ENST00000593582 ARF4P18085 180 aaPredicted RBP16.9■□□□□ 0.3
TRIM28-203ENST00000593582 PDCP20941 246 aa16.9■□□□□ 0.3
TRIM28-203ENST00000593582 DLX2Q07687 328 aaPredicted RBP16.9■□□□□ 0.3
TRIM28-203ENST00000593582 BMS1Q14692 1282 aaKnown RBP16.9■□□□□ 0.3
TRIM28-203ENST00000593582 PPP2R5AQ15172 486 aa16.9■□□□□ 0.3
TRIM28-203ENST00000593582 PLPP4Q5VZY2 271 aa16.9■□□□□ 0.3
TRIM28-203ENST00000593582 CDCA2Q69YH5 1023 aaPredicted RBP16.9■□□□□ 0.3
TRIM28-203ENST00000593582 TMC7Q7Z402 723 aa16.9■□□□□ 0.3
TRIM28-203ENST00000593582 SMG8Q8ND04 991 aaKnown RBP16.9■□□□□ 0.3
TRIM28-203ENST00000593582 PRIMPOLQ96LW4 560 aa16.9■□□□□ 0.3
TRIM28-203ENST00000593582 CDCA3Q99618 268 aaPredicted RBP16.9■□□□□ 0.3
TRIM28-203ENST00000593582 EIF2AQ9BY44 585 aaKnown RBP16.9■□□□□ 0.3
TRIM28-203ENST00000593582 GBP3Q9H0R5 595 aa16.9■□□□□ 0.3
TRIM28-203ENST00000593582 PRMT7Q9NVM4 692 aaPredicted RBP16.9■□□□□ 0.3
TRIM28-203ENST00000593582 PLXNA4Q9HCM2 1894 aa16.89■□□□□ 0.29
TRIM28-203ENST00000593582 NT5C1B-RDH14C9J2C7 533 aa16.89■□□□□ 0.29
TRIM28-203ENST00000593582 PER2O15055 1255 aa16.89■□□□□ 0.29
TRIM28-203ENST00000593582 B4GALT5O43286 388 aa16.89■□□□□ 0.29
TRIM28-203ENST00000593582 TBX10O75333 385 aa16.89■□□□□ 0.29
TRIM28-203ENST00000593582 IL9P15248 144 aa16.89■□□□□ 0.29
TRIM28-203ENST00000593582 CDC25AP30304 524 aa16.89■□□□□ 0.29
TRIM28-203ENST00000593582 NAMPTP43490 491 aa16.89■□□□□ 0.29
TRIM28-203ENST00000593582 CLUL1Q15846 466 aa16.89■□□□□ 0.29
TRIM28-203ENST00000593582 SLC27A1Q6PCB7 646 aa16.89■□□□□ 0.29
TRIM28-203ENST00000593582 PPP4R3CPQ6ZMV5 832 aa16.89■□□□□ 0.29
TRIM28-203ENST00000593582 BRAPQ7Z569 592 aa16.89■□□□□ 0.29
TRIM28-203ENST00000593582 KIFAP3Q92845 792 aa16.89■□□□□ 0.29
TRIM28-203ENST00000593582 IFT74Q96LB3 600 aa16.89■□□□□ 0.29
TRIM28-203ENST00000593582 FAM193BQ96PV7 902 aaPredicted RBP16.89■□□□□ 0.29
TRIM28-203ENST00000593582 NRDE2Q9H7Z3 1164 aa16.89■□□□□ 0.29
TRIM28-203ENST00000593582 ATG2AQ2TAZ0 1938 aa16.88■□□□□ 0.29
TRIM28-203ENST00000593582 A0A1B0GUA9 196 aa16.88■□□□□ 0.29
TRIM28-203ENST00000593582 VWA3AA6NCI4 1184 aa16.88■□□□□ 0.29
TRIM28-203ENST00000593582 EYA4O95677 639 aa16.88■□□□□ 0.29
TRIM28-203ENST00000593582 POMCP01189 267 aa16.88■□□□□ 0.29
TRIM28-203ENST00000593582 GALTP07902 379 aa16.88■□□□□ 0.29
TRIM28-203ENST00000593582 SMC1AQ14683 1233 aaKnown RBP16.88■□□□□ 0.29
TRIM28-203ENST00000593582 ZRSR1Q15695 479 aaKnown RBP16.88■□□□□ 0.29
TRIM28-203ENST00000593582 MAPK6Q16659 721 aa16.88■□□□□ 0.29
TRIM28-203ENST00000593582 DUSP6Q16828 381 aa16.88■□□□□ 0.29
TRIM28-203ENST00000593582 FAM187BQ17R55 369 aa16.88■□□□□ 0.29
TRIM28-203ENST00000593582 ARL6IP4Q66PJ3 421 aaKnown RBP16.88■□□□□ 0.29
TRIM28-203ENST00000593582 ZNF280BQ86YH2 543 aa16.88■□□□□ 0.29
TRIM28-203ENST00000593582 FAM178BQ8IXR5 827 aa16.88■□□□□ 0.29
TRIM28-203ENST00000593582 DEPTORQ8TB45 409 aa16.88■□□□□ 0.29
TRIM28-203ENST00000593582 BSNDQ8WZ55 320 aa16.88■□□□□ 0.29
TRIM28-203ENST00000593582 IGSF21Q96ID5 467 aa16.88■□□□□ 0.29
TRIM28-203ENST00000593582 FZD8Q9H461 694 aa16.88■□□□□ 0.29
TRIM28-203ENST00000593582 CD207Q9UJ71 328 aa16.88■□□□□ 0.29
TRIM28-203ENST00000593582 HES2Q9Y543 173 aa16.88■□□□□ 0.29
TRIM28-203ENST00000593582 NCOR1O75376 2440 aa16.87■□□□□ 0.29
TRIM28-203ENST00000593582 C5orf42Q9H799 3197 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms