RNA–Protein interactions for RNA: ENST00000591475.5

VPS4B-206, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 2,008 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-206ENST00000591475 CHMP6Q96FZ7 201 aa11.72□□□□□ -0.53
VPS4B-206ENST00000591475 RUSC1Q9BVN2 902 aa11.72□□□□□ -0.53
VPS4B-206ENST00000591475 FAM129AQ9BZQ8 928 aa11.72□□□□□ -0.53
VPS4B-206ENST00000591475 BHMT2Q9H2M3 363 aa11.72□□□□□ -0.53
VPS4B-206ENST00000591475 KDM4CQ9H3R0 1056 aa11.72□□□□□ -0.53
VPS4B-206ENST00000591475 OLFML3Q9NRN5 406 aa11.72□□□□□ -0.53
VPS4B-206ENST00000591475 ZDHHC18Q9NUE0 388 aa11.72□□□□□ -0.53
VPS4B-206ENST00000591475 NYAP2Q9P242 653 aa11.72□□□□□ -0.53
VPS4B-206ENST00000591475 RASAL2Q9UJF2 1139 aa11.72□□□□□ -0.53
VPS4B-206ENST00000591475 RABGAP1Q9Y3P9 1069 aa11.72□□□□□ -0.53
VPS4B-206ENST00000591475 PHF20L1A8MW92 1017 aa11.71□□□□□ -0.53
VPS4B-206ENST00000591475 TGFB1I1O43294 461 aa11.71□□□□□ -0.53
VPS4B-206ENST00000591475 RAD21O60216 631 aa11.71□□□□□ -0.53
VPS4B-206ENST00000591475 CAND2O75155 1236 aa11.71□□□□□ -0.53
VPS4B-206ENST00000591475 ASNSP08243 561 aa11.71□□□□□ -0.53
VPS4B-206ENST00000591475 CAP2P40123 477 aa11.71□□□□□ -0.53
VPS4B-206ENST00000591475 SCTRP47872 440 aa11.71□□□□□ -0.53
VPS4B-206ENST00000591475 PMS2P54278 862 aa11.71□□□□□ -0.53
VPS4B-206ENST00000591475 ICA1Q05084 483 aa11.71□□□□□ -0.53
VPS4B-206ENST00000591475 DRAP1Q14919 205 aaPredicted RBP11.71□□□□□ -0.53
VPS4B-206ENST00000591475 NFIL3Q16649 462 aa11.71□□□□□ -0.53
VPS4B-206ENST00000591475 SUPT20HL1Q3ZLR7 823 aa11.71□□□□□ -0.53
VPS4B-206ENST00000591475 DENND2CQ68D51 928 aa11.71□□□□□ -0.53
VPS4B-206ENST00000591475 CYB5D1Q6P9G0 228 aa11.71□□□□□ -0.53
VPS4B-206ENST00000591475 PARP9Q8IXQ6 854 aa11.71□□□□□ -0.53
VPS4B-206ENST00000591475 FUKQ8N0W3 1084 aa11.71□□□□□ -0.53
VPS4B-206ENST00000591475 KCTD17Q8N5Z5 321 aa11.71□□□□□ -0.53
VPS4B-206ENST00000591475 OLIG1Q8TAK6 271 aa11.71□□□□□ -0.53
VPS4B-206ENST00000591475 NEK9Q8TD19 979 aa11.71□□□□□ -0.53
VPS4B-206ENST00000591475 MKL1Q969V6 931 aa11.71□□□□□ -0.53
VPS4B-206ENST00000591475 POLR3CQ9BUI4 534 aaPredicted RBP11.71□□□□□ -0.53
VPS4B-206ENST00000591475 PABPC3Q9H361 631 aaKnown RBP11.71□□□□□ -0.53
VPS4B-206ENST00000591475 GOPCQ9HD26 462 aa11.71□□□□□ -0.53
VPS4B-206ENST00000591475 DNAJC12Q9UKB3 198 aa11.71□□□□□ -0.53
VPS4B-206ENST00000591475 NR2E1Q9Y466 385 aa11.71□□□□□ -0.53
VPS4B-206ENST00000591475 ZMYM2Q9UBW7 1377 aa11.71□□□□□ -0.54
VPS4B-206ENST00000591475 IGSF9BQ9UPX0 1349 aa11.71□□□□□ -0.54
VPS4B-206ENST00000591475 SPDYE3A6NKU9 549 aa11.7□□□□□ -0.54
VPS4B-206ENST00000591475 CCDC169A6NNP5 214 aa11.7□□□□□ -0.54
VPS4B-206ENST00000591475 BACH1O14867 736 aa11.7□□□□□ -0.54
VPS4B-206ENST00000591475 FAM13AO94988 1023 aa11.7□□□□□ -0.54
VPS4B-206ENST00000591475 FOSP01100 380 aaPredicted RBP11.7□□□□□ -0.54
VPS4B-206ENST00000591475 EEF2P13639 858 aaKnown RBP11.7□□□□□ -0.54
VPS4B-206ENST00000591475 ABCB4P21439 1286 aa11.7□□□□□ -0.54
VPS4B-206ENST00000591475 TNFAIP3P21580 790 aa11.7□□□□□ -0.54
VPS4B-206ENST00000591475 FMO5P49326 533 aa11.7□□□□□ -0.54
VPS4B-206ENST00000591475 CYP4A11Q02928 519 aa11.7□□□□□ -0.54
VPS4B-206ENST00000591475 RRP1BQ14684 758 aaKnown RBP11.7□□□□□ -0.54
VPS4B-206ENST00000591475 CROCCP2Q86T23 111 aa11.7□□□□□ -0.54
VPS4B-206ENST00000591475 LENG9Q96B70 501 aa11.7□□□□□ -0.54
VPS4B-206ENST00000591475 HVCN1Q96D96 273 aa11.7□□□□□ -0.54
VPS4B-206ENST00000591475 PGM2Q96G03 612 aa11.7□□□□□ -0.54
VPS4B-206ENST00000591475 SGSM3Q96HU1 749 aa11.7□□□□□ -0.54
VPS4B-206ENST00000591475 SYT11Q9BT88 431 aa11.7□□□□□ -0.54
VPS4B-206ENST00000591475 MKNK1Q9BUB5 465 aa11.7□□□□□ -0.54
VPS4B-206ENST00000591475 LRRC4CQ9HCJ2 640 aa11.7□□□□□ -0.54
VPS4B-206ENST00000591475 SLTMQ9NWH9 1034 aaKnown RBP eCLIP11.7□□□□□ -0.54
VPS4B-206ENST00000591475 PNMA2Q9UL42 364 aa11.7□□□□□ -0.54
VPS4B-206ENST00000591475 ZBTB21Q9ULJ3 1066 aa11.7□□□□□ -0.54
VPS4B-206ENST00000591475 SYNPO2Q9UMS6 1093 aa11.7□□□□□ -0.54
VPS4B-206ENST00000591475 CTNND1O60716 968 aaKnown RBP11.7□□□□□ -0.54
VPS4B-206ENST00000591475 DNAJC8O75937 253 aaPredicted RBP11.7□□□□□ -0.54
VPS4B-206ENST00000591475 HSPA6P17066 643 aa11.7□□□□□ -0.54
VPS4B-206ENST00000591475 GBP1P32455 592 aa11.7□□□□□ -0.54
VPS4B-206ENST00000591475 SREBF1P36956 1147 aa11.7□□□□□ -0.54
VPS4B-206ENST00000591475 DRG2P55039 364 aaKnown RBP11.7□□□□□ -0.54
VPS4B-206ENST00000591475 KLRC3Q07444 240 aa11.7□□□□□ -0.54
VPS4B-206ENST00000591475 KCNA1Q09470 495 aa11.7□□□□□ -0.54
VPS4B-206ENST00000591475 KCTD19Q17RG1 926 aaPredicted RBP11.7□□□□□ -0.54
VPS4B-206ENST00000591475 SPRED3Q2MJR0 410 aa11.7□□□□□ -0.54
VPS4B-206ENST00000591475 PREPLQ4J6C6 727 aaPredicted RBP11.7□□□□□ -0.54
VPS4B-206ENST00000591475 KIAA1755Q5JYT7 1200 aa11.7□□□□□ -0.54
VPS4B-206ENST00000591475 SLFN13Q68D06 897 aa11.7□□□□□ -0.54
VPS4B-206ENST00000591475 CCDC197Q8NCU1 140 aa11.7□□□□□ -0.54
VPS4B-206ENST00000591475 MDM1Q8TC05 714 aa11.7□□□□□ -0.54
VPS4B-206ENST00000591475 CCT6BQ92526 530 aa11.7□□□□□ -0.54
VPS4B-206ENST00000591475 EIF2AK1Q9BQI3 630 aaKnown RBP11.7□□□□□ -0.54
VPS4B-206ENST00000591475 AMNQ9BXJ7 453 aa11.7□□□□□ -0.54
VPS4B-206ENST00000591475 ZNF341Q9BYN7 854 aa11.7□□□□□ -0.54
VPS4B-206ENST00000591475 CXorf56Q9H5V9 222 aa11.7□□□□□ -0.54
VPS4B-206ENST00000591475 GINM1Q9NU53 330 aa11.7□□□□□ -0.54
VPS4B-206ENST00000591475 HAUS2Q9NVX0 235 aa11.7□□□□□ -0.54
VPS4B-206ENST00000591475 VAV3Q9UKW4 847 aa11.7□□□□□ -0.54
VPS4B-206ENST00000591475 MYH11P35749 1972 aa11.69□□□□□ -0.54
VPS4B-206ENST00000591475 UBE4BO95155 1302 aa11.69□□□□□ -0.54
VPS4B-206ENST00000591475 FRMPD4Q14CM0 1322 aa11.69□□□□□ -0.54
VPS4B-206ENST00000591475 SYNGAP1Q96PV0 1343 aa11.69□□□□□ -0.54
VPS4B-206ENST00000591475 LOC102724159A0A0B4J2E5 919 aa11.69□□□□□ -0.54
VPS4B-206ENST00000591475 ANKRD62A6NC57 917 aa11.69□□□□□ -0.54
VPS4B-206ENST00000591475 FAM86B1E9PN63 330 aa11.69□□□□□ -0.54
VPS4B-206ENST00000591475 MSH4O15457 936 aa11.69□□□□□ -0.54
VPS4B-206ENST00000591475 SHBGP04278 402 aa11.69□□□□□ -0.54
VPS4B-206ENST00000591475 FAM86B2P0C5J1 330 aa11.69□□□□□ -0.54
VPS4B-206ENST00000591475 CHN1P15882 459 aa11.69□□□□□ -0.54
VPS4B-206ENST00000591475 PLTPP55058 493 aa11.69□□□□□ -0.54
VPS4B-206ENST00000591475 JAG1P78504 1218 aa11.69□□□□□ -0.54
VPS4B-206ENST00000591475 MAPK7Q13164 816 aa11.69□□□□□ -0.54
VPS4B-206ENST00000591475 XRCC4Q13426 336 aa11.69□□□□□ -0.54
VPS4B-206ENST00000591475 NEDD9Q14511 834 aa11.69□□□□□ -0.54
VPS4B-206ENST00000591475 PWP2Q15269 919 aaKnown RBP11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms