RNA–Protein interactions for RNA: ENST00000590574.5

SMARCA4-215, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, human

APPRIS ALT1 TSL 5 BASIC

Gene SMARCA4, Length 5,282 nt, Biotype protein coding, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMARCA4-215	ENST00000590574	ZNF354C	Q86Y25	554 aa		18.33	■□□□□ 0.52
SMARCA4-215	ENST00000590574	AEN	Q8WTP8	325 aa	Known RBP	18.33	■□□□□ 0.52
SMARCA4-215	ENST00000590574	TNFRSF25	Q93038	417 aa		18.33	■□□□□ 0.52
SMARCA4-215	ENST00000590574	CAVIN3	Q969G5	261 aa		18.33	■□□□□ 0.52
SMARCA4-215	ENST00000590574	SNF8	Q96H20	258 aa		18.33	■□□□□ 0.52
SMARCA4-215	ENST00000590574	TACC3	Q9Y6A5	838 aa		18.33	■□□□□ 0.52
SMARCA4-215	ENST00000590574	SLC8A3	P57103	927 aa		18.32	■□□□□ 0.52
SMARCA4-215	ENST00000590574	GIT2	Q14161	759 aa		18.32	■□□□□ 0.52
SMARCA4-215	ENST00000590574	TMEM270	Q6UE05	265 aa		18.32	■□□□□ 0.52
SMARCA4-215	ENST00000590574	SCARA5	Q6ZMJ2	495 aa		18.32	■□□□□ 0.52
SMARCA4-215	ENST00000590574	RNF25	Q96BH1	459 aa	Predicted RBP	18.32	■□□□□ 0.52
SMARCA4-215	ENST00000590574	POLL	Q9UGP5	575 aa		18.32	■□□□□ 0.52
SMARCA4-215	ENST00000590574	ZSCAN5C	A6NGD5	496 aa	Predicted RBP	18.32	■□□□□ 0.52
SMARCA4-215	ENST00000590574	BRAF	P15056	766 aa		18.32	■□□□□ 0.52
SMARCA4-215	ENST00000590574	NALCN	Q8IZF0	1738 aa		18.32	■□□□□ 0.52
SMARCA4-215	ENST00000590574	MIIP	Q5JXC2	388 aa		18.32	■□□□□ 0.52
SMARCA4-215	ENST00000590574	ZNF449	Q6P9G9	518 aa		18.32	■□□□□ 0.52
SMARCA4-215	ENST00000590574	EPM2AIP1	Q7L775	607 aa	Predicted RBP	18.32	■□□□□ 0.52
SMARCA4-215	ENST00000590574	SLC30A5	Q8TAD4	765 aa		18.32	■□□□□ 0.52
SMARCA4-215	ENST00000590574	NXF1	Q9UBU9	619 aa	Known RBP	18.32	■□□□□ 0.52
SMARCA4-215	ENST00000590574	CAV1	Q03135	178 aa		18.32	■□□□□ 0.52
SMARCA4-215	ENST00000590574	CENPU	Q71F23	418 aa		18.32	■□□□□ 0.52
SMARCA4-215	ENST00000590574	SEC16B	Q96JE7	1060 aa		18.32	■□□□□ 0.52
SMARCA4-215	ENST00000590574	TLR10	Q9BXR5	811 aa		18.32	■□□□□ 0.52
SMARCA4-215	ENST00000590574	VCX	Q9H320	206 aa		18.32	■□□□□ 0.52
SMARCA4-215	ENST00000590574	HAUS2	Q9NVX0	235 aa		18.32	■□□□□ 0.52
SMARCA4-215	ENST00000590574	CHORDC1	Q9UHD1	332 aa	Predicted RBP	18.32	■□□□□ 0.52
SMARCA4-215	ENST00000590574	MAD1L1	Q9Y6D9	718 aa		18.32	■□□□□ 0.52
SMARCA4-215	ENST00000590574	CAMTA1	Q9Y6Y1	1673 aa		18.32	■□□□□ 0.52
SMARCA4-215	ENST00000590574		K7ERI5	159 aa		18.31	■□□□□ 0.52
SMARCA4-215	ENST00000590574	C21orf2	O43822	256 aa		18.31	■□□□□ 0.52
SMARCA4-215	ENST00000590574	FAM107A	O95990	144 aa		18.31	■□□□□ 0.52
SMARCA4-215	ENST00000590574	AARS	P49588	968 aa	Known RBP eCLIP	18.31	■□□□□ 0.52	3e-6	■□□□□ 9.5
SMARCA4-215	ENST00000590574	MKRN4P	Q13434	485 aa	Predicted RBP	18.31	■□□□□ 0.52
SMARCA4-215	ENST00000590574	TJP3	O95049	919 aa		18.31	■□□□□ 0.52
SMARCA4-215	ENST00000590574	ABCD1	P33897	745 aa		18.31	■□□□□ 0.52
SMARCA4-215	ENST00000590574	YARS	P54577	528 aa	Known RBP	18.31	■□□□□ 0.52
SMARCA4-215	ENST00000590574	GBP7	Q8N8V2	638 aa	Predicted RBP	18.31	■□□□□ 0.52
SMARCA4-215	ENST00000590574	CDHR1	Q96JP9	859 aa		18.31	■□□□□ 0.52
SMARCA4-215	ENST00000590574	ZWILCH	Q9H900	591 aa		18.31	■□□□□ 0.52
SMARCA4-215	ENST00000590574	ATMIN	O43313	823 aa	Predicted RBP	18.31	■□□□□ 0.52
SMARCA4-215	ENST00000590574	YWHAB	P31946	246 aa	Known RBP	18.31	■□□□□ 0.52
SMARCA4-215	ENST00000590574	PPP2R5D	Q14738	602 aa		18.31	■□□□□ 0.52
SMARCA4-215	ENST00000590574	NCAPG2	Q86XI2	1143 aa		18.31	■□□□□ 0.52
SMARCA4-215	ENST00000590574	THAP2	Q9H0W7	228 aa		18.31	■□□□□ 0.52
SMARCA4-215	ENST00000590574	TTC7A	Q9ULT0	858 aa	Predicted RBP	18.31	■□□□□ 0.52
SMARCA4-215	ENST00000590574	SIK3	Q9Y2K2	1263 aa		18.31	■□□□□ 0.52
SMARCA4-215	ENST00000590574	REXO2	Q9Y3B8	237 aa	Known RBP	18.31	■□□□□ 0.52
SMARCA4-215	ENST00000590574	ALG6	Q9Y672	507 aa		18.31	■□□□□ 0.52
SMARCA4-215	ENST00000590574	DRP2	Q13474	957 aa		18.31	■□□□□ 0.52
SMARCA4-215	ENST00000590574	ZNF394	Q53GI3	561 aa		18.31	■□□□□ 0.52
SMARCA4-215	ENST00000590574	KCTD6	Q8NC69	237 aa		18.31	■□□□□ 0.52
SMARCA4-215	ENST00000590574	FBXL13	Q8NEE6	735 aa		18.31	■□□□□ 0.52
SMARCA4-215	ENST00000590574	ANKRD36BP1	Q96IX9	119 aa		18.31	■□□□□ 0.52
SMARCA4-215	ENST00000590574	XPO6	Q96QU8	1125 aa	Known RBP	18.31	■□□□□ 0.52
SMARCA4-215	ENST00000590574	ERP44	Q9BS26	406 aa		18.31	■□□□□ 0.52
SMARCA4-215	ENST00000590574	ATP6V0A4	Q9HBG4	840 aa		18.31	■□□□□ 0.52
SMARCA4-215	ENST00000590574	INTU	Q9ULD6	942 aa		18.31	■□□□□ 0.52
SMARCA4-215	ENST00000590574	LMO7	Q8WWI1	1683 aa		18.31	■□□□□ 0.52
SMARCA4-215	ENST00000590574	AGT	P01019	485 aa		18.3	■□□□□ 0.52
SMARCA4-215	ENST00000590574	SSTR3	P32745	418 aa	Predicted RBP	18.3	■□□□□ 0.52
SMARCA4-215	ENST00000590574	HP1BP3	Q5SSJ5	553 aa	Predicted RBP	18.3	■□□□□ 0.52
SMARCA4-215	ENST00000590574	RINT1	Q6NUQ1	792 aa		18.3	■□□□□ 0.52
SMARCA4-215	ENST00000590574	TGS1	Q96RS0	853 aa	Known RBP	18.3	■□□□□ 0.52
SMARCA4-215	ENST00000590574	POLR3C	Q9BUI4	534 aa	Predicted RBP	18.3	■□□□□ 0.52
SMARCA4-215	ENST00000590574	CALN1	Q9BXU9	219 aa		18.3	■□□□□ 0.52
SMARCA4-215	ENST00000590574	TRIM6	Q9C030	488 aa	Predicted RBP	18.3	■□□□□ 0.52
SMARCA4-215	ENST00000590574	DBR1	Q9UK59	544 aa	Known RBP	18.3	■□□□□ 0.52
SMARCA4-215	ENST00000590574	MCF2L	O15068	1137 aa		18.3	■□□□□ 0.52
SMARCA4-215	ENST00000590574	CLDN3	O15551	220 aa		18.3	■□□□□ 0.52
SMARCA4-215	ENST00000590574	GCK	P35557	465 aa		18.3	■□□□□ 0.52
SMARCA4-215	ENST00000590574	OSTN	P61366	133 aa		18.3	■□□□□ 0.52
SMARCA4-215	ENST00000590574	PSMC5	P62195	406 aa		18.3	■□□□□ 0.52
SMARCA4-215	ENST00000590574	BBS9	Q3SYG4	887 aa		18.3	■□□□□ 0.52
SMARCA4-215	ENST00000590574	TMEM119	Q4V9L6	283 aa		18.3	■□□□□ 0.52
SMARCA4-215	ENST00000590574	ATP2A3	Q93084	1043 aa		18.3	■□□□□ 0.52
SMARCA4-215	ENST00000590574	COMT	P21964	271 aa		18.3	■□□□□ 0.52
SMARCA4-215	ENST00000590574	KCNK18	Q7Z418	384 aa		18.3	■□□□□ 0.52
SMARCA4-215	ENST00000590574	PYROXD1	Q8WU10	500 aa		18.3	■□□□□ 0.52
SMARCA4-215	ENST00000590574	SYF2	O95926	243 aa	Known RBP	18.3	■□□□□ 0.52
SMARCA4-215	ENST00000590574	MT-ND3	P03897	115 aa		18.3	■□□□□ 0.52
SMARCA4-215	ENST00000590574	KRT76	Q01546	638 aa		18.3	■□□□□ 0.52
SMARCA4-215	ENST00000590574	VPS72	Q15906	364 aa		18.3	■□□□□ 0.52
SMARCA4-215	ENST00000590574	NBPF9	Q3BBW0	867 aa		18.3	■□□□□ 0.52
SMARCA4-215	ENST00000590574	MKNK1	Q9BUB5	465 aa		18.3	■□□□□ 0.52
SMARCA4-215	ENST00000590574	GGT7	Q9UJ14	662 aa		18.3	■□□□□ 0.52
SMARCA4-215	ENST00000590574	LRRC37A3	O60309	1634 aa		18.3	■□□□□ 0.52
SMARCA4-215	ENST00000590574	LONRF1	Q17RB8	773 aa		18.29	■□□□□ 0.52
SMARCA4-215	ENST00000590574	LCMT1	Q9UIC8	334 aa		18.29	■□□□□ 0.52
SMARCA4-215	ENST00000590574	AKAP3	O75969	853 aa		18.29	■□□□□ 0.52
SMARCA4-215	ENST00000590574	LUC7L3	O95232	432 aa	Known RBP	18.29	■□□□□ 0.52
SMARCA4-215	ENST00000590574	FAM153B	P0C7A2	387 aa		18.29	■□□□□ 0.52
SMARCA4-215	ENST00000590574	AMPD2	Q01433	879 aa		18.29	■□□□□ 0.52
SMARCA4-215	ENST00000590574	SPARCL1	Q14515	664 aa		18.29	■□□□□ 0.52
SMARCA4-215	ENST00000590574	FAM153C	Q494X1	144 aa		18.29	■□□□□ 0.52
SMARCA4-215	ENST00000590574	ECT2	Q9H8V3	914 aa		18.29	■□□□□ 0.52
SMARCA4-215	ENST00000590574	TMBIM4	Q9HC24	238 aa		18.29	■□□□□ 0.52
SMARCA4-215	ENST00000590574	GABBR1	Q9UBS5	961 aa		18.29	■□□□□ 0.52
SMARCA4-215	ENST00000590574	FAM153A	Q9UHL3	310 aa		18.29	■□□□□ 0.52
SMARCA4-215	ENST00000590574	GOLGA8M	H3BSY2	632 aa		18.29	■□□□□ 0.52

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