RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 RNF10Q8N5U6 811 aaKnown RBP15.43■□□□□ 0.06
LIG3-205ENST00000585941 DEPTORQ8TB45 409 aa15.43■□□□□ 0.06
LIG3-205ENST00000585941 TCP11Q8WWU5 503 aa15.43■□□□□ 0.06
LIG3-205ENST00000585941 BRI3BPQ8WY22 251 aa15.43■□□□□ 0.06
LIG3-205ENST00000585941 POMGNT1Q8WZA1 660 aa15.43■□□□□ 0.06
LIG3-205ENST00000585941 GLG1Q92896 1179 aa15.43■□□□□ 0.06
LIG3-205ENST00000585941 BICD1Q96G01 975 aa15.43■□□□□ 0.06
LIG3-205ENST00000585941 KIFC3Q9BVG8 833 aa15.43■□□□□ 0.06
LIG3-205ENST00000585941 CARD6Q9BX69 1037 aa15.43■□□□□ 0.06
LIG3-205ENST00000585941 R3HDMLQ9H3Y0 253 aa15.43■□□□□ 0.06
LIG3-205ENST00000585941 EFCC1Q9HA90 598 aa15.43■□□□□ 0.06
LIG3-205ENST00000585941 VTA1Q9NP79 307 aa15.43■□□□□ 0.06
LIG3-205ENST00000585941 TRIM10Q9UDY6 481 aa15.43■□□□□ 0.06
LIG3-205ENST00000585941 ADGRA3Q8IWK6 1321 aa15.43■□□□□ 0.06
LIG3-205ENST00000585941 TISP43B9A030 160 aa15.42■□□□□ 0.06
LIG3-205ENST00000585941 ARIH2O95376 493 aa15.42■□□□□ 0.06
LIG3-205ENST00000585941 PIGRP01833 764 aa15.42■□□□□ 0.06
LIG3-205ENST00000585941 TXNP10599 105 aaKnown RBP15.42■□□□□ 0.06
LIG3-205ENST00000585941 SOX10P56693 466 aa15.42■□□□□ 0.06
LIG3-205ENST00000585941 GFPT1Q06210 699 aaPredicted RBP15.42■□□□□ 0.06
LIG3-205ENST00000585941 SLFN12LQ6IEE8 588 aa15.42■□□□□ 0.06
LIG3-205ENST00000585941 GPD1LQ8N335 351 aa15.42■□□□□ 0.06
LIG3-205ENST00000585941 ATP8B4Q8TF62 1192 aa15.42■□□□□ 0.06
LIG3-205ENST00000585941 TSC1Q92574 1164 aa15.42■□□□□ 0.06
LIG3-205ENST00000585941 UBXN4Q92575 508 aa15.42■□□□□ 0.06
LIG3-205ENST00000585941 MFSD14AQ96MC6 490 aa15.42■□□□□ 0.06
LIG3-205ENST00000585941 SPATA33Q96N06 139 aa15.42■□□□□ 0.06
LIG3-205ENST00000585941 ALS2CR12Q96Q35 445 aa15.42■□□□□ 0.06
LIG3-205ENST00000585941 SMARCAD1Q9H4L7 1026 aa15.42■□□□□ 0.06
LIG3-205ENST00000585941 TMEM134Q9H6X4 195 aa15.42■□□□□ 0.06
LIG3-205ENST00000585941 TADA3O75528 432 aa15.41■□□□□ 0.06
LIG3-205ENST00000585941 CELF2O95319 508 aaKnown RBP15.41■□□□□ 0.06
LIG3-205ENST00000585941 GLRA2P23416 452 aa15.41■□□□□ 0.06
LIG3-205ENST00000585941 SOX5P35711 763 aa15.41■□□□□ 0.06
LIG3-205ENST00000585941 LIG4P49917 911 aa15.41■□□□□ 0.06
LIG3-205ENST00000585941 MXI1P50539 228 aa15.41■□□□□ 0.06
LIG3-205ENST00000585941 EFNA5P52803 228 aa15.41■□□□□ 0.06
LIG3-205ENST00000585941 ARID5AQ03989 594 aa15.41■□□□□ 0.06
LIG3-205ENST00000585941 IER5Q5VY09 327 aa15.41■□□□□ 0.06
LIG3-205ENST00000585941 ARMCX2Q7L311 632 aa15.41■□□□□ 0.06
LIG3-205ENST00000585941 FBXO16Q8IX29 292 aaPredicted RBP15.41■□□□□ 0.06
LIG3-205ENST00000585941 ANKRD13CQ8N6S4 541 aa15.41■□□□□ 0.06
LIG3-205ENST00000585941 TMEM143Q96AN5 459 aa15.41■□□□□ 0.06
LIG3-205ENST00000585941 RRAGCQ9HB90 399 aa15.41■□□□□ 0.06
LIG3-205ENST00000585941 DNAJC12Q9UKB3 198 aa15.41■□□□□ 0.06
LIG3-205ENST00000585941 STYXL1Q9Y6J8 313 aa15.41■□□□□ 0.06
LIG3-205ENST00000585941 F8VZ95 297 aa15.41■□□□□ 0.06
LIG3-205ENST00000585941 K7ERI5 159 aa15.41■□□□□ 0.06
LIG3-205ENST00000585941 ADORA2AP29274 412 aa15.41■□□□□ 0.06
LIG3-205ENST00000585941 PTK2Q05397 1052 aa15.41■□□□□ 0.06
LIG3-205ENST00000585941 LAMC2Q13753 1193 aa15.41■□□□□ 0.06
LIG3-205ENST00000585941 MXD4Q14582 209 aaPredicted RBP15.41■□□□□ 0.06
LIG3-205ENST00000585941 BMS1Q14692 1282 aaKnown RBP15.41■□□□□ 0.06
LIG3-205ENST00000585941 EPC2Q52LR7 807 aa15.41■□□□□ 0.06
LIG3-205ENST00000585941 PAPD7Q5XG87 772 aaKnown RBP15.41■□□□□ 0.06
LIG3-205ENST00000585941 SLC39A4Q6P5W5 647 aa15.41■□□□□ 0.06
LIG3-205ENST00000585941 SRGAP1Q7Z6B7 1085 aa15.41■□□□□ 0.06
LIG3-205ENST00000585941 LMO3Q8TAP4 145 aa15.41■□□□□ 0.06
LIG3-205ENST00000585941 PARD3BQ8TEW8 1205 aa15.41■□□□□ 0.06
LIG3-205ENST00000585941 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP15.41■□□□□ 0.06
LIG3-205ENST00000585941 JRKLQ9Y4A0 524 aa15.41■□□□□ 0.06
LIG3-205ENST00000585941 RBM47A0AV96 593 aaKnown RBP15.4■□□□□ 0.06
LIG3-205ENST00000585941 MACROD2A1Z1Q3 448 aa15.4■□□□□ 0.06
LIG3-205ENST00000585941 LRRIQ4A6NIV6 560 aa15.4■□□□□ 0.06
LIG3-205ENST00000585941 ZNF233A6NK53 670 aa15.4■□□□□ 0.06
LIG3-205ENST00000585941 BTNL10A8MVZ5 291 aa15.4■□□□□ 0.06
LIG3-205ENST00000585941 EXTL3O43909 919 aa15.4■□□□□ 0.06
LIG3-205ENST00000585941 LDHAP00338 332 aaKnown RBP15.4■□□□□ 0.06
LIG3-205ENST00000585941 ADRB2P07550 413 aa15.4■□□□□ 0.06
LIG3-205ENST00000585941 MAPK4P31152 587 aa15.4■□□□□ 0.06
LIG3-205ENST00000585941 DLG4P78352 724 aa15.4■□□□□ 0.06
LIG3-205ENST00000585941 CYP24A1Q07973 514 aa15.4■□□□□ 0.06
LIG3-205ENST00000585941 PPP3CAQ08209 521 aa15.4■□□□□ 0.06
LIG3-205ENST00000585941 DRAP1Q14919 205 aaPredicted RBP15.4■□□□□ 0.06
LIG3-205ENST00000585941 FAM110CQ1W6H9 321 aa15.4■□□□□ 0.06
LIG3-205ENST00000585941 HSDL1Q3SXM5 330 aa15.4■□□□□ 0.06
LIG3-205ENST00000585941 C1orf220Q5T0J3 134 aa15.4■□□□□ 0.06
LIG3-205ENST00000585941 KRT39Q6A163 491 aa15.4■□□□□ 0.06
LIG3-205ENST00000585941 TAS1R3Q7RTX0 852 aa15.4■□□□□ 0.06
LIG3-205ENST00000585941 CBWD2Q8IUF1 395 aa15.4■□□□□ 0.06
LIG3-205ENST00000585941 ZNF710Q8N1W2 664 aa15.4■□□□□ 0.06
LIG3-205ENST00000585941 ASAP3Q8TDY4 903 aa15.4■□□□□ 0.06
LIG3-205ENST00000585941 NOX5Q96PH1 765 aa15.4■□□□□ 0.06
LIG3-205ENST00000585941 TMEM8AQ9HCN3 771 aa15.4■□□□□ 0.06
LIG3-205ENST00000585941 ADAMTS1Q9UHI8 967 aa15.4■□□□□ 0.06
LIG3-205ENST00000585941 COQ4Q9Y3A0 265 aa15.4■□□□□ 0.06
LIG3-205ENST00000585941 TRPM7Q96QT4 1865 aa15.39■□□□□ 0.05
LIG3-205ENST00000585941 A0A087X0T9 212 aa15.39■□□□□ 0.05
LIG3-205ENST00000585941 GOLGA8IPA6NC78 632 aa15.39■□□□□ 0.05
LIG3-205ENST00000585941 GOLGA8JA6NMD2 632 aa15.39■□□□□ 0.05
LIG3-205ENST00000585941 ADCY3O60266 1144 aa15.39■□□□□ 0.05
LIG3-205ENST00000585941 HBP1O60381 514 aa15.39■□□□□ 0.05
LIG3-205ENST00000585941 GH1P01241 217 aa15.39■□□□□ 0.05
LIG3-205ENST00000585941 FAM228BP0C875 321 aa15.39■□□□□ 0.05
LIG3-205ENST00000585941 GCLMP48507 274 aa15.39■□□□□ 0.05
LIG3-205ENST00000585941 AMPD2Q01433 879 aa15.39■□□□□ 0.05
LIG3-205ENST00000585941 NAB2Q15742 525 aa15.39■□□□□ 0.05
LIG3-205ENST00000585941 MAMDC4Q6UXC1 1216 aa15.39■□□□□ 0.05
LIG3-205ENST00000585941 TRAPPC11Q7Z392 1133 aa15.39■□□□□ 0.05
LIG3-205ENST00000585941 ZNF571Q7Z3V5 609 aaPredicted RBP15.39■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms