RNA–Protein interactions for RNA: ENST00000585466.1

CLIP3-202, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 2

Gene CLIP3, Length 368 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-202ENST00000585466 DAW1Q8N136 415 aa16.82■□□□□ 0.28
CLIP3-202ENST00000585466 BCL7CQ8WUZ0 217 aaPredicted RBP16.82■□□□□ 0.28
CLIP3-202ENST00000585466 ZNF558Q96NG5 402 aa16.82■□□□□ 0.28
CLIP3-202ENST00000585466 PNMA5Q96PV4 448 aa16.82■□□□□ 0.28
CLIP3-202ENST00000585466 UHRF1Q96T88 793 aaPredicted RBP16.82■□□□□ 0.28
CLIP3-202ENST00000585466 CCDC113Q9H0I3 377 aa16.82■□□□□ 0.28
CLIP3-202ENST00000585466 BHMT2Q9H2M3 363 aa16.82■□□□□ 0.28
CLIP3-202ENST00000585466 RNF39Q9H2S5 420 aa16.82■□□□□ 0.28
CLIP3-202ENST00000585466 DDX19AQ9NUU7 478 aaKnown RBP16.82■□□□□ 0.28
CLIP3-202ENST00000585466 ARHGEF35A5YM69 484 aa16.81■□□□□ 0.28
CLIP3-202ENST00000585466 E9PMD0 336 aa16.81■□□□□ 0.28
CLIP3-202ENST00000585466 H3BQ06 376 aaPredicted RBP16.81■□□□□ 0.28
CLIP3-202ENST00000585466 GLP2RO95838 553 aa16.81■□□□□ 0.28
CLIP3-202ENST00000585466 AXLP30530 894 aa16.81■□□□□ 0.28
CLIP3-202ENST00000585466 ADAM15Q13444 863 aa16.81■□□□□ 0.28
CLIP3-202ENST00000585466 FAM187BQ17R55 369 aa16.81■□□□□ 0.28
CLIP3-202ENST00000585466 NOMO2Q5JPE7 1267 aa16.81■□□□□ 0.28
CLIP3-202ENST00000585466 DTHD1Q6ZMT9 781 aa16.81■□□□□ 0.28
CLIP3-202ENST00000585466 LRRC15Q8TF66 581 aa16.81■□□□□ 0.28
CLIP3-202ENST00000585466 RSPH1Q8WYR4 309 aa16.81■□□□□ 0.28
CLIP3-202ENST00000585466 MRPS27Q92552 414 aaKnown RBP16.81■□□□□ 0.28
CLIP3-202ENST00000585466 CCDC51Q96ER9 411 aa16.81■□□□□ 0.28
CLIP3-202ENST00000585466 MRPL9Q9BYD2 267 aaKnown RBP16.81■□□□□ 0.28
CLIP3-202ENST00000585466 CSRNP2Q9H175 543 aa16.81■□□□□ 0.28
CLIP3-202ENST00000585466 FZD8Q9H461 694 aa16.81■□□□□ 0.28
CLIP3-202ENST00000585466 NRDE2Q9H7Z3 1164 aa16.81■□□□□ 0.28
CLIP3-202ENST00000585466 POLD4Q9HCU8 107 aa16.81■□□□□ 0.28
CLIP3-202ENST00000585466 TLR9Q9NR96 1032 aa16.81■□□□□ 0.28
CLIP3-202ENST00000585466 IPPQ9Y573 584 aa16.81■□□□□ 0.28
CLIP3-202ENST00000585466 GTF3C3Q9Y5Q9 886 aa16.81■□□□□ 0.28
CLIP3-202ENST00000585466 TDRD15B5MCY1 1934 aaKnown RBP16.8■□□□□ 0.28
CLIP3-202ENST00000585466 A0A1B0GUA9 196 aa16.8■□□□□ 0.28
CLIP3-202ENST00000585466 ERLIN2O94905 339 aa16.8■□□□□ 0.28
CLIP3-202ENST00000585466 EYA4O95677 639 aa16.8■□□□□ 0.28
CLIP3-202ENST00000585466 BCAR1P56945 870 aa16.8■□□□□ 0.28
CLIP3-202ENST00000585466 MAPK7Q13164 816 aa16.8■□□□□ 0.28
CLIP3-202ENST00000585466 ARL6IP4Q66PJ3 421 aaKnown RBP16.8■□□□□ 0.28
CLIP3-202ENST00000585466 NOTUMQ6P988 496 aa16.8■□□□□ 0.28
CLIP3-202ENST00000585466 GLB1LQ6UWU2 654 aa16.8■□□□□ 0.28
CLIP3-202ENST00000585466 ZNF280BQ86YH2 543 aa16.8■□□□□ 0.28
CLIP3-202ENST00000585466 VN1R2Q8NFZ6 395 aa16.8■□□□□ 0.28
CLIP3-202ENST00000585466 RUSC1Q9BVN2 902 aa16.8■□□□□ 0.28
CLIP3-202ENST00000585466 VN1R3Q9BXE9 311 aa16.8■□□□□ 0.28
CLIP3-202ENST00000585466 RSAD1Q9HA92 442 aa16.8■□□□□ 0.28
CLIP3-202ENST00000585466 CLDND1Q9NY35 253 aa16.8■□□□□ 0.28
CLIP3-202ENST00000585466 DNAJB4Q9UDY4 337 aa16.8■□□□□ 0.28
CLIP3-202ENST00000585466 HES2Q9Y543 173 aa16.8■□□□□ 0.28
CLIP3-202ENST00000585466 CNTNAP2Q9UHC6 1331 aa16.79■□□□□ 0.28
CLIP3-202ENST00000585466 GRXCR2A6NFK2 248 aa16.79■□□□□ 0.28
CLIP3-202ENST00000585466 LRRIQ4A6NIV6 560 aa16.79■□□□□ 0.28
CLIP3-202ENST00000585466 NT5C1B-RDH14C9J2C7 533 aa16.79■□□□□ 0.28
CLIP3-202ENST00000585466 NCK2O43639 380 aa16.79■□□□□ 0.28
CLIP3-202ENST00000585466 DDHD2O94830 711 aa16.79■□□□□ 0.28
CLIP3-202ENST00000585466 IL9P15248 144 aa16.79■□□□□ 0.28
CLIP3-202ENST00000585466 PPM1AP35813 382 aa16.79■□□□□ 0.28
CLIP3-202ENST00000585466 GRIN1Q05586 938 aa16.79■□□□□ 0.28
CLIP3-202ENST00000585466 KCNC3Q14003 757 aa16.79■□□□□ 0.28
CLIP3-202ENST00000585466 TMEM119Q4V9L6 283 aa16.79■□□□□ 0.28
CLIP3-202ENST00000585466 KRT79Q5XKE5 535 aa16.79■□□□□ 0.28
CLIP3-202ENST00000585466 C1orf186Q6ZWK4 172 aa16.79■□□□□ 0.28
CLIP3-202ENST00000585466 BRAPQ7Z569 592 aa16.79■□□□□ 0.28
CLIP3-202ENST00000585466 CDR2LQ86X02 465 aaPredicted RBP16.79■□□□□ 0.28
CLIP3-202ENST00000585466 EFHBQ8N7U6 833 aa16.79■□□□□ 0.28
CLIP3-202ENST00000585466 GSTCDQ8NEC7 633 aa16.79■□□□□ 0.28
CLIP3-202ENST00000585466 PGBD4Q96DM1 585 aa16.79■□□□□ 0.28
CLIP3-202ENST00000585466 INTS4Q96HW7 963 aaKnown RBP16.79■□□□□ 0.28
CLIP3-202ENST00000585466 MSLNLQ96KJ4 702 aa16.79■□□□□ 0.28
CLIP3-202ENST00000585466 KIFC3Q9BVG8 833 aa16.79■□□□□ 0.28
CLIP3-202ENST00000585466 RAB34Q9BZG1 259 aa16.79■□□□□ 0.28
CLIP3-202ENST00000585466 NXF3Q9H4D5 531 aaKnown RBP16.79■□□□□ 0.28
CLIP3-202ENST00000585466 CD320Q9NPF0 282 aa16.79■□□□□ 0.28
CLIP3-202ENST00000585466 SPG21Q9NZD8 308 aa16.79■□□□□ 0.28
CLIP3-202ENST00000585466 CLEC1BQ9P126 229 aa16.79■□□□□ 0.28
CLIP3-202ENST00000585466 INPP5FQ9Y2H2 1132 aa16.79■□□□□ 0.28
CLIP3-202ENST00000585466 STK24Q9Y6E0 443 aa16.79■□□□□ 0.28
CLIP3-202ENST00000585466 C5orf42Q9H799 3197 aa16.79■□□□□ 0.28
CLIP3-202ENST00000585466 MYH11P35749 1972 aa16.78■□□□□ 0.28
CLIP3-202ENST00000585466 VWA3AA6NCI4 1184 aa16.78■□□□□ 0.28
CLIP3-202ENST00000585466 HIDE1A8MVS5 230 aa16.78■□□□□ 0.28
CLIP3-202ENST00000585466 K7ELQ4 463 aaPredicted RBP16.78■□□□□ 0.28
CLIP3-202ENST00000585466 TNFRSF10AO00220 468 aa16.78■□□□□ 0.28
CLIP3-202ENST00000585466 GALTP07902 379 aa16.78■□□□□ 0.28
CLIP3-202ENST00000585466 SYT1P21579 422 aa16.78■□□□□ 0.28
CLIP3-202ENST00000585466 NAMPTP43490 491 aa16.78■□□□□ 0.28
CLIP3-202ENST00000585466 NRIP1P48552 1158 aa16.78■□□□□ 0.28
CLIP3-202ENST00000585466 SLC11A1P49279 550 aa16.78■□□□□ 0.28
CLIP3-202ENST00000585466 RBM10P98175 930 aaKnown RBP16.78■□□□□ 0.28
CLIP3-202ENST00000585466 RESTQ13127 1097 aa16.78■□□□□ 0.28
CLIP3-202ENST00000585466 PRIMPOLQ96LW4 560 aa16.78■□□□□ 0.28
CLIP3-202ENST00000585466 MIOSQ9NXC5 875 aa16.78■□□□□ 0.28
CLIP3-202ENST00000585466 USP20Q9Y2K6 914 aa16.78■□□□□ 0.28
CLIP3-202ENST00000585466 MYH15Q9Y2K3 1946 aa16.78■□□□□ 0.28
CLIP3-202ENST00000585466 ZC3H11AO75152 810 aaKnown RBP eCLIP16.77■□□□□ 0.28
CLIP3-202ENST00000585466 DSC1Q08554 894 aa16.77■□□□□ 0.28
CLIP3-202ENST00000585466 PTPAQ15257 358 aa16.77■□□□□ 0.28
CLIP3-202ENST00000585466 DUSP6Q16828 381 aa16.77■□□□□ 0.28
CLIP3-202ENST00000585466 PTCRAQ6ISU1 281 aaPredicted RBP16.77■□□□□ 0.28
CLIP3-202ENST00000585466 RINT1Q6NUQ1 792 aa16.77■□□□□ 0.28
CLIP3-202ENST00000585466 SLC27A1Q6PCB7 646 aa16.77■□□□□ 0.28
CLIP3-202ENST00000585466 RBM23Q86U06 439 aaKnown RBP16.77■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms