RNA–Protein interactions for RNA: ENST00000584541.1

RFFL-211, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 4

Gene RFFL, Length 563 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-211ENST00000584541 MRPL4Q9BYD3 311 aaKnown RBP20.11■□□□□ 0.81
RFFL-211ENST00000584541 FZD8Q9H461 694 aa20.11■□□□□ 0.81
RFFL-211ENST00000584541 MINDY3Q9H8M7 445 aa20.11■□□□□ 0.81
RFFL-211ENST00000584541 ACKR2O00590 384 aa20.1■□□□□ 0.81
RFFL-211ENST00000584541 KIAA0355O15063 1070 aa20.1■□□□□ 0.81
RFFL-211ENST00000584541 GPR182O15218 404 aa20.1■□□□□ 0.81
RFFL-211ENST00000584541 IQCF3P0C7M6 154 aa20.1■□□□□ 0.81
RFFL-211ENST00000584541 PRPF4BQ13523 1007 aaKnown RBP20.1■□□□□ 0.81
RFFL-211ENST00000584541 KNOP1Q1ED39 458 aaKnown RBP20.1■□□□□ 0.81
RFFL-211ENST00000584541 DPCR1Q3MIW9 517 aa20.1■□□□□ 0.81
RFFL-211ENST00000584541 CT47A1Q5JQC4 288 aaPredicted RBP20.1■□□□□ 0.81
RFFL-211ENST00000584541 FBXO47Q5MNV8 452 aa20.1■□□□□ 0.81
RFFL-211ENST00000584541 ADSSL1Q8N142 457 aa20.1■□□□□ 0.81
RFFL-211ENST00000584541 TMEM40Q8WWA1 233 aa20.1■□□□□ 0.81
RFFL-211ENST00000584541 DHTKD1Q96HY7 919 aaPredicted RBP20.1■□□□□ 0.81
RFFL-211ENST00000584541 NAT10Q9H0A0 1025 aaKnown RBP20.1■□□□□ 0.81
RFFL-211ENST00000584541 NOC2LQ9Y3T9 749 aaKnown RBP20.1■□□□□ 0.81
RFFL-211ENST00000584541 EVI5O60447 810 aa20.09■□□□□ 0.81
RFFL-211ENST00000584541 CSDE1O75534 798 aaKnown RBP20.09■□□□□ 0.81
RFFL-211ENST00000584541 GHRP10912 638 aa20.09■□□□□ 0.81
RFFL-211ENST00000584541 RAG1P15918 1043 aa20.09■□□□□ 0.81
RFFL-211ENST00000584541 CYP2C18P33260 490 aa20.09■□□□□ 0.81
RFFL-211ENST00000584541 LIG4P49917 911 aa20.09■□□□□ 0.81
RFFL-211ENST00000584541 MLLT1Q03111 559 aaPredicted RBP20.09■□□□□ 0.81
RFFL-211ENST00000584541 PAK2Q13177 524 aa20.09■□□□□ 0.81
RFFL-211ENST00000584541 KLHL10Q6JEL2 608 aa20.09■□□□□ 0.81
RFFL-211ENST00000584541 TRAF7Q6Q0C0 670 aa20.09■□□□□ 0.81
RFFL-211ENST00000584541 TSHZ1Q6ZSZ6 1077 aa20.09■□□□□ 0.81
RFFL-211ENST00000584541 HS2ST1Q7LGA3 356 aa20.09■□□□□ 0.81
RFFL-211ENST00000584541 TAS1R3Q7RTX0 852 aa20.09■□□□□ 0.81
RFFL-211ENST00000584541 C7orf61Q8IZ16 206 aa20.09■□□□□ 0.81
RFFL-211ENST00000584541 GBP3Q9H0R5 595 aa20.09■□□□□ 0.81
RFFL-211ENST00000584541 SCN5AQ14524 2016 aa20.09■□□□□ 0.81
RFFL-211ENST00000584541 CNTNAP2Q9UHC6 1331 aa20.08■□□□□ 0.81
RFFL-211ENST00000584541 PPP1R3GB7ZBB8 358 aa20.08■□□□□ 0.81
RFFL-211ENST00000584541 HNRNPDLO14979 420 aaKnown RBP20.08■□□□□ 0.81
RFFL-211ENST00000584541 TIMP1P01033 207 aa20.08■□□□□ 0.81
RFFL-211ENST00000584541 CD44P16070 742 aaKnown RBP20.08■□□□□ 0.81
RFFL-211ENST00000584541 FGFR4P22455 802 aa20.08■□□□□ 0.81
RFFL-211ENST00000584541 AXLP30530 894 aa20.08■□□□□ 0.81
RFFL-211ENST00000584541 RGS19P49795 217 aa20.08■□□□□ 0.81
RFFL-211ENST00000584541 CCL23P55773 120 aa20.08■□□□□ 0.81
RFFL-211ENST00000584541 KCNA1Q09470 495 aa20.08■□□□□ 0.81
RFFL-211ENST00000584541 NFX1Q12986 1120 aaKnown RBP20.08■□□□□ 0.81
RFFL-211ENST00000584541 LPIN1Q14693 890 aa20.08■□□□□ 0.81
RFFL-211ENST00000584541 ZPBP2Q6X784 338 aa20.08■□□□□ 0.81
RFFL-211ENST00000584541 FAM228AQ86W67 206 aa20.08■□□□□ 0.81
RFFL-211ENST00000584541 GOLGA5Q8TBA6 731 aa20.08■□□□□ 0.81
RFFL-211ENST00000584541 TSG101Q99816 390 aa20.08■□□□□ 0.81
RFFL-211ENST00000584541 FUCA2Q9BTY2 467 aa20.08■□□□□ 0.81
RFFL-211ENST00000584541 CGNQ9P2M7 1197 aaKnown RBP20.08■□□□□ 0.81
RFFL-211ENST00000584541 DNAH12Q6ZR08 3092 aa20.08■□□□□ 0.8
RFFL-211ENST00000584541 UMODL1Q5DID0 1318 aa20.07■□□□□ 0.8
RFFL-211ENST00000584541 BICDL2A1A5D9 508 aa20.07■□□□□ 0.8
RFFL-211ENST00000584541 TRIM43BA6NCK2 446 aa20.07■□□□□ 0.8
RFFL-211ENST00000584541 CALUO43852 315 aaPredicted RBP20.07■□□□□ 0.8
RFFL-211ENST00000584541 TSPAN1O60635 241 aa20.07■□□□□ 0.8
RFFL-211ENST00000584541 PIGRP01833 764 aa20.07■□□□□ 0.8
RFFL-211ENST00000584541 RFC2P35250 354 aa20.07■□□□□ 0.8
RFFL-211ENST00000584541 ZNF445P59923 1031 aa20.07■□□□□ 0.8
RFFL-211ENST00000584541 SNRPFP62306 86 aaKnown RBP20.07■□□□□ 0.8
RFFL-211ENST00000584541 PAK1Q13153 545 aa20.07■□□□□ 0.8
RFFL-211ENST00000584541 LRSAM1Q6UWE0 723 aa20.07■□□□□ 0.8
RFFL-211ENST00000584541 APBB1IPQ7Z5R6 666 aaPredicted RBP20.07■□□□□ 0.8
RFFL-211ENST00000584541 NELFBQ8WX92 580 aa20.07■□□□□ 0.8
RFFL-211ENST00000584541 DPF3Q92784 378 aa20.07■□□□□ 0.8
RFFL-211ENST00000584541 P2RX5Q93086 422 aa20.07■□□□□ 0.8
RFFL-211ENST00000584541 TRIM43Q96BQ3 446 aaPredicted RBP20.07■□□□□ 0.8
RFFL-211ENST00000584541 TARS2Q9BW92 718 aaKnown RBP20.07■□□□□ 0.8
RFFL-211ENST00000584541 WNT8AQ9H1J5 351 aa20.07■□□□□ 0.8
RFFL-211ENST00000584541 TYW1Q9NV66 732 aaKnown RBP20.07■□□□□ 0.8
RFFL-211ENST00000584541 ST3GAL5Q9UNP4 418 aa20.07■□□□□ 0.8
RFFL-211ENST00000584541 CTNND2Q9UQB3 1225 aa20.07■□□□□ 0.8
RFFL-211ENST00000584541 PDXKO00764 312 aa20.06■□□□□ 0.8
RFFL-211ENST00000584541 CAVIN2O95810 425 aa20.06■□□□□ 0.8
RFFL-211ENST00000584541 CCNE1P24864 410 aa20.06■□□□□ 0.8
RFFL-211ENST00000584541 ERCC5P28715 1186 aaPredicted RBP20.06■□□□□ 0.8
RFFL-211ENST00000584541 CD52P31358 61 aa20.06■□□□□ 0.8
RFFL-211ENST00000584541 HOXD13P35453 343 aa20.06■□□□□ 0.8
RFFL-211ENST00000584541 MATR3P43243 847 aaKnown RBP eCLIP20.06■□□□□ 0.83e-6■■■□□ 15.2
RFFL-211ENST00000584541 AMHR2Q16671 573 aa20.06■□□□□ 0.8
RFFL-211ENST00000584541 ANO6Q4KMQ2 910 aa20.06■□□□□ 0.8
RFFL-211ENST00000584541 ATF7IP2Q5U623 682 aa20.06■□□□□ 0.8
RFFL-211ENST00000584541 SLFN12LQ6IEE8 588 aa20.06■□□□□ 0.8
RFFL-211ENST00000584541 NOTUMQ6P988 496 aa20.06■□□□□ 0.8
RFFL-211ENST00000584541 FAM43BQ6ZT52 329 aaPredicted RBP20.06■□□□□ 0.8
RFFL-211ENST00000584541 TMEM199Q8N511 208 aa20.06■□□□□ 0.8
RFFL-211ENST00000584541 SCLYQ96I15 445 aa20.06■□□□□ 0.8
RFFL-211ENST00000584541 ACO2Q99798 780 aaKnown RBP20.06■□□□□ 0.8
RFFL-211ENST00000584541 ADPGKQ9BRR6 497 aa20.06■□□□□ 0.8
RFFL-211ENST00000584541 IFIH1Q9BYX4 1025 aaKnown RBP20.06■□□□□ 0.8
RFFL-211ENST00000584541 DNAJC25Q9H1X3 360 aa20.06■□□□□ 0.8
RFFL-211ENST00000584541 KCTD10Q9H3F6 313 aa20.06■□□□□ 0.8
RFFL-211ENST00000584541 AGO3Q9H9G7 860 aaKnown RBP20.06■□□□□ 0.8
RFFL-211ENST00000584541 ERVK-5Q9HDB9 667 aa20.06■□□□□ 0.8
RFFL-211ENST00000584541 AGPAT5Q9NUQ2 364 aa20.06■□□□□ 0.8
RFFL-211ENST00000584541 PADI3Q9ULW8 664 aa20.06■□□□□ 0.8
RFFL-211ENST00000584541 PIN4Q9Y237 131 aaKnown RBP20.06■□□□□ 0.8
RFFL-211ENST00000584541 ZMYM2Q9UBW7 1377 aa20.06■□□□□ 0.8
RFFL-211ENST00000584541 N4BP3O15049 544 aa20.05■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 87.6 ms