RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 RSPH3Q86UC2 560 aa17.71■□□□□ 0.43
SS18-211ENST00000578954 FAM126BQ8IXS8 530 aa17.71■□□□□ 0.43
SS18-211ENST00000578954 DHX38Q92620 1227 aaKnown RBP17.71■□□□□ 0.43
SS18-211ENST00000578954 PRIMPOLQ96LW4 560 aa17.71■□□□□ 0.43
SS18-211ENST00000578954 THAP9Q9H5L6 903 aa17.71■□□□□ 0.43
SS18-211ENST00000578954 MINDY3Q9H8M7 445 aa17.71■□□□□ 0.43
SS18-211ENST00000578954 AGPAT3Q9NRZ7 376 aa17.71■□□□□ 0.43
SS18-211ENST00000578954 TRMT13Q9NUP7 481 aaKnown RBP17.71■□□□□ 0.43
SS18-211ENST00000578954 DMAC2Q9NW81 257 aa17.71■□□□□ 0.43
SS18-211ENST00000578954 STYXL1Q9Y6J8 313 aa17.71■□□□□ 0.43
SS18-211ENST00000578954 ACKR2O00590 384 aa17.7■□□□□ 0.42
SS18-211ENST00000578954 B4GALT4O60513 344 aa17.7■□□□□ 0.42
SS18-211ENST00000578954 EDN1P05305 212 aa17.7■□□□□ 0.42
SS18-211ENST00000578954 PRKCBP05771 671 aa17.7■□□□□ 0.42
SS18-211ENST00000578954 CRYBB1P53674 252 aaPredicted RBP17.7■□□□□ 0.42
SS18-211ENST00000578954 MRPS6P82932 125 aaKnown RBP17.7■□□□□ 0.42
SS18-211ENST00000578954 AMHR2Q16671 573 aa17.7■□□□□ 0.42
SS18-211ENST00000578954 FAM26DQ5JW98 314 aa17.7■□□□□ 0.42
SS18-211ENST00000578954 SLC39A4Q6P5W5 647 aa17.7■□□□□ 0.42
SS18-211ENST00000578954 SYCP3Q8IZU3 236 aa17.7■□□□□ 0.42
SS18-211ENST00000578954 CSGALNACT2Q8N6G5 542 aa17.7■□□□□ 0.42
SS18-211ENST00000578954 NLRP7Q8WX94 980 aa17.7■□□□□ 0.42
SS18-211ENST00000578954 CEP63Q96MT8 703 aa17.7■□□□□ 0.42
SS18-211ENST00000578954 TMEM106CQ9BVX2 250 aa17.7■□□□□ 0.42
SS18-211ENST00000578954 GCOM2Q9BZD3 368 aaPredicted RBP17.7■□□□□ 0.42
SS18-211ENST00000578954 IKZF4Q9H2S9 585 aa17.7■□□□□ 0.42
SS18-211ENST00000578954 GRPEL1Q9HAV7 217 aa17.7■□□□□ 0.42
SS18-211ENST00000578954 PRMT7Q9NVM4 692 aaPredicted RBP17.7■□□□□ 0.42
SS18-211ENST00000578954 FANCLQ9NW38 375 aa17.7■□□□□ 0.42
SS18-211ENST00000578954 TRPV2Q9Y5S1 764 aa17.7■□□□□ 0.42
SS18-211ENST00000578954 FGFR1OPO95684 399 aaKnown RBP17.69■□□□□ 0.42
SS18-211ENST00000578954 CD4P01730 458 aa17.69■□□□□ 0.42
SS18-211ENST00000578954 NR3C1P04150 777 aa17.69■□□□□ 0.42
SS18-211ENST00000578954 IQCF3P0C7M6 154 aa17.69■□□□□ 0.42
SS18-211ENST00000578954 DARSP14868 501 aaKnown RBP17.69■□□□□ 0.42
SS18-211ENST00000578954 TPM4P67936 248 aa17.69■□□□□ 0.42
SS18-211ENST00000578954 KIZQ2M2Z5 673 aa17.69■□□□□ 0.42
SS18-211ENST00000578954 IRF2BP1Q8IU81 584 aa17.69■□□□□ 0.42
SS18-211ENST00000578954 ZNF668Q96K58 619 aaPredicted RBP17.69■□□□□ 0.42
SS18-211ENST00000578954 SRRTQ9BXP5 876 aaKnown RBP17.69■□□□□ 0.42
SS18-211ENST00000578954 MRPL4Q9BYD3 311 aaKnown RBP17.69■□□□□ 0.42
SS18-211ENST00000578954 CELF4Q9BZC1 486 aaKnown RBP17.69■□□□□ 0.42
SS18-211ENST00000578954 INO80BQ9C086 356 aaPredicted RBP17.69■□□□□ 0.42
SS18-211ENST00000578954 SENP6Q9GZR1 1112 aaPredicted RBP17.69■□□□□ 0.42
SS18-211ENST00000578954 SAMSN1Q9NSI8 373 aaKnown RBP17.69■□□□□ 0.42
SS18-211ENST00000578954 MROH7Q68CQ1 1323 aa17.69■□□□□ 0.42
SS18-211ENST00000578954 ANKRD63C9JTQ0 380 aa17.68■□□□□ 0.42
SS18-211ENST00000578954 INO80B-WBP1J3KQ70 363 aa17.68■□□□□ 0.42
SS18-211ENST00000578954 HNRNPDLO14979 420 aaKnown RBP17.68■□□□□ 0.42
SS18-211ENST00000578954 GARTP22102 1010 aa17.68■□□□□ 0.42
SS18-211ENST00000578954 EIF4BP23588 611 aaKnown RBP17.68■□□□□ 0.42
SS18-211ENST00000578954 NR2F2P24468 414 aa17.68■□□□□ 0.42
SS18-211ENST00000578954 RPL13P26373 211 aaKnown RBP17.68■□□□□ 0.42
SS18-211ENST00000578954 MRE11P49959 708 aa17.68■□□□□ 0.42
SS18-211ENST00000578954 MARSP56192 900 aaKnown RBP17.68■□□□□ 0.42
SS18-211ENST00000578954 TPD52L1Q16890 204 aaPredicted RBP17.68■□□□□ 0.42
SS18-211ENST00000578954 SLC39A5Q6ZMH5 540 aa17.68■□□□□ 0.42
SS18-211ENST00000578954 ANKRD33Q7Z3H0 272 aa17.68■□□□□ 0.42
SS18-211ENST00000578954 FILIP1Q7Z7B0 1213 aa17.68■□□□□ 0.42
SS18-211ENST00000578954 DIS3LQ8TF46 1054 aaKnown RBP17.68■□□□□ 0.42
SS18-211ENST00000578954 PPP1R16BQ96T49 567 aa17.68■□□□□ 0.42
SS18-211ENST00000578954 OSMRQ99650 979 aa17.68■□□□□ 0.42
SS18-211ENST00000578954 TRPV6Q9H1D0 765 aa17.68■□□□□ 0.42
SS18-211ENST00000578954 CDHR5Q9HBB8 845 aa17.68■□□□□ 0.42
SS18-211ENST00000578954 NOD1Q9Y239 953 aa17.68■□□□□ 0.42
SS18-211ENST00000578954 CDY2AQ9Y6F7 541 aa17.68■□□□□ 0.42
SS18-211ENST00000578954 CNTNAP2Q9UHC6 1331 aa17.68■□□□□ 0.42
SS18-211ENST00000578954 TISP43B9A030 160 aa17.67■□□□□ 0.42
SS18-211ENST00000578954 M0QZ92 97 aa17.67■□□□□ 0.42
SS18-211ENST00000578954 ABLIM1O14639 778 aa17.67■□□□□ 0.42
SS18-211ENST00000578954 KIAA0391O15091 583 aaKnown RBP17.67■□□□□ 0.42
SS18-211ENST00000578954 CETN3O15182 167 aa17.67■□□□□ 0.42
SS18-211ENST00000578954 PROZP22891 400 aa17.67■□□□□ 0.42
SS18-211ENST00000578954 ADSSP30520 456 aa17.67■□□□□ 0.42
SS18-211ENST00000578954 LIG4P49917 911 aa17.67■□□□□ 0.42
SS18-211ENST00000578954 SPAG1Q07617 926 aa17.67■□□□□ 0.42
SS18-211ENST00000578954 TMEM62Q0P6H9 643 aa17.67■□□□□ 0.42
SS18-211ENST00000578954 SARM1Q6SZW1 724 aa17.67■□□□□ 0.42
SS18-211ENST00000578954 TSHZ1Q6ZSZ6 1077 aa17.67■□□□□ 0.42
SS18-211ENST00000578954 FAM114A1Q8IWE2 563 aa17.67■□□□□ 0.42
SS18-211ENST00000578954 CAGE1Q8TC20 777 aa17.67■□□□□ 0.42
SS18-211ENST00000578954 TMEM40Q8WWA1 233 aa17.67■□□□□ 0.42
SS18-211ENST00000578954 SCLT1Q96NL6 688 aa17.67■□□□□ 0.42
SS18-211ENST00000578954 TOX2Q96NM4 488 aa17.67■□□□□ 0.42
SS18-211ENST00000578954 ACO2Q99798 780 aaKnown RBP17.67■□□□□ 0.42
SS18-211ENST00000578954 MKNK1Q9BUB5 465 aa17.67■□□□□ 0.42
SS18-211ENST00000578954 TARS2Q9BW92 718 aaKnown RBP17.67■□□□□ 0.42
SS18-211ENST00000578954 PTPRHQ9HD43 1115 aa17.67■□□□□ 0.42
SS18-211ENST00000578954 BRCA2P51587 3418 aa17.67■□□□□ 0.42
SS18-211ENST00000578954 TTLL13PA6NNM8 815 aa17.66■□□□□ 0.42
SS18-211ENST00000578954 CLIC2O15247 247 aa17.66■□□□□ 0.42
SS18-211ENST00000578954 SLC16A3O15427 465 aaKnown RBP17.66■□□□□ 0.42
SS18-211ENST00000578954 TSPAN1O60635 241 aa17.66■□□□□ 0.42
SS18-211ENST00000578954 TOM1L1O75674 476 aa17.66■□□□□ 0.42
SS18-211ENST00000578954 GNA14O95837 355 aa17.66■□□□□ 0.42
SS18-211ENST00000578954 CHRNA1P02708 482 aa17.66■□□□□ 0.42
SS18-211ENST00000578954 EEF1GP26641 437 aaKnown RBP17.66■□□□□ 0.42
SS18-211ENST00000578954 MCCD1P59942 119 aaPredicted RBP17.66■□□□□ 0.42
SS18-211ENST00000578954 ADAM9Q13443 819 aa17.66■□□□□ 0.42
SS18-211ENST00000578954 PRPF4BQ13523 1007 aaKnown RBP17.66■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms