RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 NFX1Q12986 1120 aaKnown RBP11.25□□□□□ -0.61
SS18-210ENST00000578700 IQCB1Q15051 598 aa11.25□□□□□ -0.61
SS18-210ENST00000578700 XRRA1Q6P2D8 792 aa11.25□□□□□ -0.61
SS18-210ENST00000578700 ZBTB33Q86T24 672 aa11.25□□□□□ -0.61
SS18-210ENST00000578700 PLA2G4DQ86XP0 818 aa11.25□□□□□ -0.61
SS18-210ENST00000578700 NPAS4Q8IUM7 802 aa11.25□□□□□ -0.61
SS18-210ENST00000578700 DRC7Q8IY82 874 aa11.25□□□□□ -0.61
SS18-210ENST00000578700 GRAMD1CQ8IYS0 662 aa11.25□□□□□ -0.61
SS18-210ENST00000578700 CMTR2Q8IYT2 770 aaKnown RBP11.25□□□□□ -0.61
SS18-210ENST00000578700 FBXL6Q8N531 539 aa11.25□□□□□ -0.61
SS18-210ENST00000578700 KCTD17Q8N5Z5 321 aa11.25□□□□□ -0.61
SS18-210ENST00000578700 GIMAP8Q8ND71 665 aaPredicted RBP11.25□□□□□ -0.61
SS18-210ENST00000578700 SPATA20Q8TB22 786 aa11.25□□□□□ -0.61
SS18-210ENST00000578700 CRYGNQ8WXF5 182 aa11.25□□□□□ -0.61
SS18-210ENST00000578700 LINC01599Q8WXQ3 324 aa11.25□□□□□ -0.61
SS18-210ENST00000578700 ATOH1Q92858 354 aaPredicted RBP11.25□□□□□ -0.61
SS18-210ENST00000578700 P2RX5Q93086 422 aa11.25□□□□□ -0.61
SS18-210ENST00000578700 PLIN2Q99541 437 aa11.25□□□□□ -0.61
SS18-210ENST00000578700 PRRX2Q99811 253 aa11.25□□□□□ -0.61
SS18-210ENST00000578700 SENP7Q9BQF6 1050 aa11.25□□□□□ -0.61
SS18-210ENST00000578700 APOL5Q9BWW9 433 aa11.25□□□□□ -0.61
SS18-210ENST00000578700 ERAP1Q9NZ08 941 aa11.25□□□□□ -0.61
SS18-210ENST00000578700 KMT2EQ8IZD2 1858 aa11.25□□□□□ -0.61
SS18-210ENST00000578700 GSTTP1A0A1W2PQM5 241 aa11.24□□□□□ -0.61
SS18-210ENST00000578700 POTEMA6NI47 508 aa11.24□□□□□ -0.61
SS18-210ENST00000578700 GLP2RO95838 553 aa11.24□□□□□ -0.61
SS18-210ENST00000578700 RPN1P04843 607 aaKnown RBP11.24□□□□□ -0.61
SS18-210ENST00000578700 TPM3P06753 285 aa11.24□□□□□ -0.61
SS18-210ENST00000578700 PRR29P0C7W0 189 aa11.24□□□□□ -0.61
SS18-210ENST00000578700 ERCC5P28715 1186 aaPredicted RBP11.24□□□□□ -0.61
SS18-210ENST00000578700 PPP1R2P41236 205 aa11.24□□□□□ -0.61
SS18-210ENST00000578700 VCPP55072 806 aaKnown RBP11.24□□□□□ -0.61
SS18-210ENST00000578700 COASYQ13057 564 aa11.24□□□□□ -0.61
SS18-210ENST00000578700 PAK2Q13177 524 aa11.24□□□□□ -0.61
SS18-210ENST00000578700 CEP55Q53EZ4 464 aa11.24□□□□□ -0.61
SS18-210ENST00000578700 HS1BP3Q53T59 392 aa11.24□□□□□ -0.61
SS18-210ENST00000578700 NAALADL2Q58DX5 795 aa11.24□□□□□ -0.61
SS18-210ENST00000578700 MARCH8Q5T0T0 291 aa11.24□□□□□ -0.61
SS18-210ENST00000578700 IER5Q5VY09 327 aa11.24□□□□□ -0.61
SS18-210ENST00000578700 PCNX4Q63HM2 1172 aa11.24□□□□□ -0.61
SS18-210ENST00000578700 SMRP1Q8NCR6 262 aa11.24□□□□□ -0.61
SS18-210ENST00000578700 HAS1Q92839 578 aa11.24□□□□□ -0.61
SS18-210ENST00000578700 PDLIM2Q96JY6 352 aa11.24□□□□□ -0.61
SS18-210ENST00000578700 PHF7Q9BWX1 381 aaPredicted RBP11.24□□□□□ -0.61
SS18-210ENST00000578700 BLZF1Q9H2G9 400 aa11.24□□□□□ -0.61
SS18-210ENST00000578700 SMARCAD1Q9H4L7 1026 aa11.24□□□□□ -0.61
SS18-210ENST00000578700 PADI3Q9ULW8 664 aa11.24□□□□□ -0.61
SS18-210ENST00000578700 GINS2Q9Y248 185 aa11.24□□□□□ -0.61
SS18-210ENST00000578700 PCDHB7Q9Y5E2 793 aa11.24□□□□□ -0.61
SS18-210ENST00000578700 TRPV2Q9Y5S1 764 aa11.24□□□□□ -0.61
SS18-210ENST00000578700 RIF1Q5UIP0 2472 aaKnown RBP11.23□□□□□ -0.61
SS18-210ENST00000578700 RRN3P2A6NIE6 340 aa11.23□□□□□ -0.61
SS18-210ENST00000578700 TBKBP1A7MCY6 615 aa11.23□□□□□ -0.61
SS18-210ENST00000578700 FAM86B1E9PN63 330 aa11.23□□□□□ -0.61
SS18-210ENST00000578700 H0Y858 1186 aa11.23□□□□□ -0.61
SS18-210ENST00000578700 CBFA2T2O43439 604 aa11.23□□□□□ -0.61
SS18-210ENST00000578700 GAS7O60861 476 aa11.23□□□□□ -0.61
SS18-210ENST00000578700 FAM86B2P0C5J1 330 aa11.23□□□□□ -0.61
SS18-210ENST00000578700 INSRRP14616 1297 aa11.23□□□□□ -0.61
SS18-210ENST00000578700 AVPR2P30518 371 aa11.23□□□□□ -0.61
SS18-210ENST00000578700 SIGLEC14Q08ET2 396 aa11.23□□□□□ -0.61
SS18-210ENST00000578700 KCNB1Q14721 858 aa11.23□□□□□ -0.61
SS18-210ENST00000578700 TPD52L1Q16890 204 aaPredicted RBP11.23□□□□□ -0.61
SS18-210ENST00000578700 LRCH2Q5VUJ6 765 aa11.23□□□□□ -0.61
SS18-210ENST00000578700 NCAPH2Q6IBW4 605 aa11.23□□□□□ -0.61
SS18-210ENST00000578700 SARM1Q6SZW1 724 aa11.23□□□□□ -0.61
SS18-210ENST00000578700 NIPA1Q7RTP0 329 aa11.23□□□□□ -0.61
SS18-210ENST00000578700 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.23□□□□□ -0.61
SS18-210ENST00000578700 DHX40Q8IX18 779 aaKnown RBP11.23□□□□□ -0.61
SS18-210ENST00000578700 ETNPPLQ8TBG4 499 aa11.23□□□□□ -0.61
SS18-210ENST00000578700 TRAPPC12Q8WVT3 735 aa11.23□□□□□ -0.61
SS18-210ENST00000578700 LARP4BQ92615 738 aaKnown RBP11.23□□□□□ -0.61
SS18-210ENST00000578700 STAMQ92783 540 aa11.23□□□□□ -0.61
SS18-210ENST00000578700 ZNF577Q9BSK1 485 aa11.23□□□□□ -0.61
SS18-210ENST00000578700 FTHL17Q9BXU8 183 aa11.23□□□□□ -0.61
SS18-210ENST00000578700 TLR9Q9NR96 1032 aa11.23□□□□□ -0.61
SS18-210ENST00000578700 EXOC1Q9NV70 894 aa11.23□□□□□ -0.61
SS18-210ENST00000578700 KBTBD4Q9NVX7 518 aa11.23□□□□□ -0.61
SS18-210ENST00000578700 TRPC6Q9Y210 931 aa11.23□□□□□ -0.61
SS18-210ENST00000578700 PCDHB12Q9Y5F1 795 aa11.23□□□□□ -0.61
SS18-210ENST00000578700 FRMPD4Q14CM0 1322 aa11.23□□□□□ -0.61
SS18-210ENST00000578700 PLXNA4Q9HCM2 1894 aa11.23□□□□□ -0.61
SS18-210ENST00000578700 PTPRZ1P23471 2315 aaPredicted RBP11.23□□□□□ -0.61
SS18-210ENST00000578700 A0A087WWV3 80 aa11.22□□□□□ -0.61
SS18-210ENST00000578700 MBLAC1A4D2B0 266 aaPredicted RBP11.22□□□□□ -0.61
SS18-210ENST00000578700 MSH4O15457 936 aa11.22□□□□□ -0.61
SS18-210ENST00000578700 EDIL3O43854 480 aa11.22□□□□□ -0.61
SS18-210ENST00000578700 KCNA2P16389 499 aa11.22□□□□□ -0.61
SS18-210ENST00000578700 CDK11BP21127 795 aaKnown RBP11.22□□□□□ -0.61
SS18-210ENST00000578700 ASIC1P78348 528 aa11.22□□□□□ -0.61
SS18-210ENST00000578700 CUL4BQ13620 913 aa11.22□□□□□ -0.61
SS18-210ENST00000578700 DHX8Q14562 1220 aaKnown RBP11.22□□□□□ -0.61
SS18-210ENST00000578700 CBX2Q14781 532 aaPredicted RBP11.22□□□□□ -0.61
SS18-210ENST00000578700 ZNF658Q5TYW1 1059 aaPredicted RBP11.22□□□□□ -0.61
SS18-210ENST00000578700 LLGL2Q6P1M3 1020 aa11.22□□□□□ -0.61
SS18-210ENST00000578700 CNNM4Q6P4Q7 775 aa11.22□□□□□ -0.61
SS18-210ENST00000578700 THNSL1Q8IYQ7 743 aa11.22□□□□□ -0.61
SS18-210ENST00000578700 ANKRD20A12PQ8NF67 263 aa11.22□□□□□ -0.61
SS18-210ENST00000578700 RAD54LQ92698 747 aa11.22□□□□□ -0.61
SS18-210ENST00000578700 CDHR1Q96JP9 859 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms