RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 PRKCBP05771 671 aa21.52■■□□□ 1.04
SS18-209ENST00000578595 RB1P06400 928 aa21.52■■□□□ 1.04
SS18-209ENST00000578595 ARF4P18085 180 aaPredicted RBP21.52■■□□□ 1.04
SS18-209ENST00000578595 CACNB1Q02641 598 aaPredicted RBP21.52■■□□□ 1.04
SS18-209ENST00000578595 PKP1Q13835 747 aa21.52■■□□□ 1.04
SS18-209ENST00000578595 SLC39A14Q15043 492 aa21.52■■□□□ 1.04
SS18-209ENST00000578595 MAPK6Q16659 721 aa21.52■■□□□ 1.04
SS18-209ENST00000578595 ZNF598Q86UK7 904 aaKnown RBP21.52■■□□□ 1.04
SS18-209ENST00000578595 GPBP1Q86WP2 473 aa21.52■■□□□ 1.04
SS18-209ENST00000578595 THNSL1Q8IYQ7 743 aa21.52■■□□□ 1.04
SS18-209ENST00000578595 KCTD17Q8N5Z5 321 aa21.52■■□□□ 1.04
SS18-209ENST00000578595 SYT2Q8N9I0 419 aaPredicted RBP21.52■■□□□ 1.04
SS18-209ENST00000578595 KRI1Q8N9T8 703 aaKnown RBP21.52■■□□□ 1.04
SS18-209ENST00000578595 SYMPKQ92797 1274 aaKnown RBP21.52■■□□□ 1.04
SS18-209ENST00000578595 EPSTI1Q96J88 318 aa21.52■■□□□ 1.04
SS18-209ENST00000578595 CASD1Q96PB1 797 aa21.52■■□□□ 1.04
SS18-209ENST00000578595 MRPL9Q9BYD2 267 aaKnown RBP21.52■■□□□ 1.04
SS18-209ENST00000578595 ALG13Q9NP73 1137 aaKnown RBP21.52■■□□□ 1.04
SS18-209ENST00000578595 RNF19AQ9NV58 838 aa21.52■■□□□ 1.04
SS18-209ENST00000578595 NPTXRO95502 500 aa21.51■■□□□ 1.03
SS18-209ENST00000578595 ITGA4P13612 1032 aa21.51■■□□□ 1.03
SS18-209ENST00000578595 LAG3P18627 525 aa21.51■■□□□ 1.03
SS18-209ENST00000578595 HOXA11P31270 313 aaPredicted RBP21.51■■□□□ 1.03
SS18-209ENST00000578595 RNASELQ05823 741 aaKnown RBP21.51■■□□□ 1.03
SS18-209ENST00000578595 PRPF4BQ13523 1007 aaKnown RBP21.51■■□□□ 1.03
SS18-209ENST00000578595 CDCA2Q69YH5 1023 aaPredicted RBP21.51■■□□□ 1.03
SS18-209ENST00000578595 HACE1Q8IYU2 909 aa21.51■■□□□ 1.03
SS18-209ENST00000578595 URGCPQ8TCY9 931 aa21.51■■□□□ 1.03
SS18-209ENST00000578595 CCDC51Q96ER9 411 aa21.51■■□□□ 1.03
SS18-209ENST00000578595 PLVAPQ9BX97 442 aa21.51■■□□□ 1.03
SS18-209ENST00000578595 EIF2AQ9BY44 585 aaKnown RBP21.51■■□□□ 1.03
SS18-209ENST00000578595 GBP3Q9H0R5 595 aa21.51■■□□□ 1.03
SS18-209ENST00000578595 ZHX3Q9H4I2 956 aa21.51■■□□□ 1.03
SS18-209ENST00000578595 KMT5AQ9NQR1 393 aa21.51■■□□□ 1.03
SS18-209ENST00000578595 MEIS3P2A8K0S8 358 aa21.5■■□□□ 1.03
SS18-209ENST00000578595 C5orf67F2Z3F1 127 aa21.5■■□□□ 1.03
SS18-209ENST00000578595 SPTLC2O15270 562 aa21.5■■□□□ 1.03
SS18-209ENST00000578595 LINC00271P0C7V0 271 aa21.5■■□□□ 1.03
SS18-209ENST00000578595 NASPP49321 788 aaPredicted RBP21.5■■□□□ 1.03
SS18-209ENST00000578595 SLC12A3P55017 1021 aa21.5■■□□□ 1.03
SS18-209ENST00000578595 MCM6Q14566 821 aa21.5■■□□□ 1.03
SS18-209ENST00000578595 UBXN11Q5T124 520 aa21.5■■□□□ 1.03
SS18-209ENST00000578595 SLC27A1Q6PCB7 646 aa21.5■■□□□ 1.03
SS18-209ENST00000578595 C1orf186Q6ZWK4 172 aa21.5■■□□□ 1.03
SS18-209ENST00000578595 USP49Q70CQ1 688 aa21.5■■□□□ 1.03
SS18-209ENST00000578595 KLHL23Q8NBE8 558 aa21.5■■□□□ 1.03
SS18-209ENST00000578595 COLGALT1Q8NBJ5 622 aa21.5■■□□□ 1.03
SS18-209ENST00000578595 MRPL38Q96DV4 380 aaKnown RBP21.5■■□□□ 1.03
SS18-209ENST00000578595 PRIMPOLQ96LW4 560 aa21.5■■□□□ 1.03
SS18-209ENST00000578595 TIPINQ9BVW5 301 aa21.5■■□□□ 1.03
SS18-209ENST00000578595 TRAIPQ9BWF2 469 aa21.5■■□□□ 1.03
SS18-209ENST00000578595 CCSER1Q9C0I3 900 aa21.5■■□□□ 1.03
SS18-209ENST00000578595 RSAD1Q9HA92 442 aa21.5■■□□□ 1.03
SS18-209ENST00000578595 CNTNAP2Q9UHC6 1331 aa21.5■■□□□ 1.03
SS18-209ENST00000578595 CITO14578 2027 aa21.5■■□□□ 1.03
SS18-209ENST00000578595 NPHP3-ACAD11A0A0J9YXS1 232 aa21.49■■□□□ 1.03
SS18-209ENST00000578595 SFI1A8K8P3 1242 aa21.49■■□□□ 1.03
SS18-209ENST00000578595 N4BP3O15049 544 aa21.49■■□□□ 1.03
SS18-209ENST00000578595 GRM6O15303 877 aa21.49■■□□□ 1.03
SS18-209ENST00000578595 ZC3H11AO75152 810 aaKnown RBP eCLIP21.49■■□□□ 1.03
SS18-209ENST00000578595 NCLP19338 710 aaKnown RBP21.49■■□□□ 1.03
SS18-209ENST00000578595 GUCY2CP25092 1073 aa21.49■■□□□ 1.03
SS18-209ENST00000578595 EFNA5P52803 228 aa21.49■■□□□ 1.03
SS18-209ENST00000578595 AMHR2Q16671 573 aa21.49■■□□□ 1.03
SS18-209ENST00000578595 TIGD5Q53EQ6 642 aa21.49■■□□□ 1.03
SS18-209ENST00000578595 PHF6Q8IWS0 365 aaKnown RBP eCLIP21.49■■□□□ 1.03
SS18-209ENST00000578595 CNNM3Q8NE01 707 aa21.49■■□□□ 1.03
SS18-209ENST00000578595 LARP4BQ92615 738 aaKnown RBP21.49■■□□□ 1.03
SS18-209ENST00000578595 RAD54LQ92698 747 aa21.49■■□□□ 1.03
SS18-209ENST00000578595 ADPGKQ9BRR6 497 aa21.49■■□□□ 1.03
SS18-209ENST00000578595 PRDM6Q9NQX0 595 aa21.49■■□□□ 1.03
SS18-209ENST00000578595 LMCD1Q9NZU5 365 aa21.49■■□□□ 1.03
SS18-209ENST00000578595 KCND2Q9NZV8 630 aa21.49■■□□□ 1.03
SS18-209ENST00000578595 USP20Q9Y2K6 914 aa21.49■■□□□ 1.03
SS18-209ENST00000578595 HES2Q9Y543 173 aa21.49■■□□□ 1.03
SS18-209ENST00000578595 IPPQ9Y573 584 aa21.49■■□□□ 1.03
SS18-209ENST00000578595 K7ERI5 159 aa21.48■■□□□ 1.03
SS18-209ENST00000578595 ZNF623O75123 536 aa21.48■■□□□ 1.03
SS18-209ENST00000578595 TBCAO75347 108 aaKnown RBP21.48■■□□□ 1.03
SS18-209ENST00000578595 FAM13AO94988 1023 aa21.48■■□□□ 1.03
SS18-209ENST00000578595 ITGB1P05556 798 aa21.48■■□□□ 1.03
SS18-209ENST00000578595 POU3F3P20264 500 aaPredicted RBP21.48■■□□□ 1.03
SS18-209ENST00000578595 PBX3P40426 434 aa21.48■■□□□ 1.03
SS18-209ENST00000578595 NPTX2P47972 431 aa21.48■■□□□ 1.03
SS18-209ENST00000578595 NOMO2Q5JPE7 1267 aa21.48■■□□□ 1.03
SS18-209ENST00000578595 RRAGBQ5VZM2 374 aa21.48■■□□□ 1.03
SS18-209ENST00000578595 PPP4R3CPQ6ZMV5 832 aa21.48■■□□□ 1.03
SS18-209ENST00000578595 DAW1Q8N136 415 aa21.48■■□□□ 1.03
SS18-209ENST00000578595 LINC00301Q8NCQ3 95 aa21.48■■□□□ 1.03
SS18-209ENST00000578595 P2RX5Q93086 422 aa21.48■■□□□ 1.03
SS18-209ENST00000578595 ZNF558Q96NG5 402 aa21.48■■□□□ 1.03
SS18-209ENST00000578595 FAM193BQ96PV7 902 aaPredicted RBP21.48■■□□□ 1.03
SS18-209ENST00000578595 NXF3Q9H4D5 531 aaKnown RBP21.48■■□□□ 1.03
SS18-209ENST00000578595 CWH43Q9H720 699 aa21.48■■□□□ 1.03
SS18-209ENST00000578595 PHLPP2Q6ZVD8 1323 aa21.48■■□□□ 1.03
SS18-209ENST00000578595 SLC16A4O15374 487 aa21.47■■□□□ 1.03
SS18-209ENST00000578595 YEATS4O95619 227 aa21.47■■□□□ 1.03
SS18-209ENST00000578595 STAT6P42226 847 aa21.47■■□□□ 1.03
SS18-209ENST00000578595 SMTNP53814 917 aa21.47■■□□□ 1.03
SS18-209ENST00000578595 MAPK7Q13164 816 aa21.47■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms