RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 POTEMA6NI47 508 aa11.24□□□□□ -0.61
SS18-207ENST00000577636 GLP2RO95838 553 aa11.24□□□□□ -0.61
SS18-207ENST00000577636 RPN1P04843 607 aaKnown RBP11.24□□□□□ -0.61
SS18-207ENST00000577636 TPM3P06753 285 aa11.24□□□□□ -0.61
SS18-207ENST00000577636 PRR29P0C7W0 189 aa11.24□□□□□ -0.61
SS18-207ENST00000577636 ERCC5P28715 1186 aaPredicted RBP11.24□□□□□ -0.61
SS18-207ENST00000577636 PPP1R2P41236 205 aa11.24□□□□□ -0.61
SS18-207ENST00000577636 VCPP55072 806 aaKnown RBP11.24□□□□□ -0.61
SS18-207ENST00000577636 COASYQ13057 564 aa11.24□□□□□ -0.61
SS18-207ENST00000577636 PAK2Q13177 524 aa11.24□□□□□ -0.61
SS18-207ENST00000577636 CEP55Q53EZ4 464 aa11.24□□□□□ -0.61
SS18-207ENST00000577636 HS1BP3Q53T59 392 aa11.24□□□□□ -0.61
SS18-207ENST00000577636 NAALADL2Q58DX5 795 aa11.24□□□□□ -0.61
SS18-207ENST00000577636 MARCH8Q5T0T0 291 aa11.24□□□□□ -0.61
SS18-207ENST00000577636 IER5Q5VY09 327 aa11.24□□□□□ -0.61
SS18-207ENST00000577636 PCNX4Q63HM2 1172 aa11.24□□□□□ -0.61
SS18-207ENST00000577636 SMRP1Q8NCR6 262 aa11.24□□□□□ -0.61
SS18-207ENST00000577636 HAS1Q92839 578 aa11.24□□□□□ -0.61
SS18-207ENST00000577636 PDLIM2Q96JY6 352 aa11.24□□□□□ -0.61
SS18-207ENST00000577636 PHF7Q9BWX1 381 aaPredicted RBP11.24□□□□□ -0.61
SS18-207ENST00000577636 BLZF1Q9H2G9 400 aa11.24□□□□□ -0.61
SS18-207ENST00000577636 SMARCAD1Q9H4L7 1026 aa11.24□□□□□ -0.61
SS18-207ENST00000577636 PADI3Q9ULW8 664 aa11.24□□□□□ -0.61
SS18-207ENST00000577636 GINS2Q9Y248 185 aa11.24□□□□□ -0.61
SS18-207ENST00000577636 PCDHB7Q9Y5E2 793 aa11.24□□□□□ -0.61
SS18-207ENST00000577636 TRPV2Q9Y5S1 764 aa11.24□□□□□ -0.61
SS18-207ENST00000577636 TECTAO75443 2155 aa11.24□□□□□ -0.61
SS18-207ENST00000577636 C5orf42Q9H799 3197 aa11.24□□□□□ -0.61
SS18-207ENST00000577636 RRN3P2A6NIE6 340 aa11.23□□□□□ -0.61
SS18-207ENST00000577636 TBKBP1A7MCY6 615 aa11.23□□□□□ -0.61
SS18-207ENST00000577636 FAM86B1E9PN63 330 aa11.23□□□□□ -0.61
SS18-207ENST00000577636 H0Y858 1186 aa11.23□□□□□ -0.61
SS18-207ENST00000577636 CBFA2T2O43439 604 aa11.23□□□□□ -0.61
SS18-207ENST00000577636 GAS7O60861 476 aa11.23□□□□□ -0.61
SS18-207ENST00000577636 FAM86B2P0C5J1 330 aa11.23□□□□□ -0.61
SS18-207ENST00000577636 INSRRP14616 1297 aa11.23□□□□□ -0.61
SS18-207ENST00000577636 AVPR2P30518 371 aa11.23□□□□□ -0.61
SS18-207ENST00000577636 SIGLEC14Q08ET2 396 aa11.23□□□□□ -0.61
SS18-207ENST00000577636 KCNB1Q14721 858 aa11.23□□□□□ -0.61
SS18-207ENST00000577636 TPD52L1Q16890 204 aaPredicted RBP11.23□□□□□ -0.61
SS18-207ENST00000577636 LRCH2Q5VUJ6 765 aa11.23□□□□□ -0.61
SS18-207ENST00000577636 NCAPH2Q6IBW4 605 aa11.23□□□□□ -0.61
SS18-207ENST00000577636 SARM1Q6SZW1 724 aa11.23□□□□□ -0.61
SS18-207ENST00000577636 NIPA1Q7RTP0 329 aa11.23□□□□□ -0.61
SS18-207ENST00000577636 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.23□□□□□ -0.61
SS18-207ENST00000577636 DHX40Q8IX18 779 aaKnown RBP11.23□□□□□ -0.61
SS18-207ENST00000577636 ETNPPLQ8TBG4 499 aa11.23□□□□□ -0.61
SS18-207ENST00000577636 TRAPPC12Q8WVT3 735 aa11.23□□□□□ -0.61
SS18-207ENST00000577636 LARP4BQ92615 738 aaKnown RBP11.23□□□□□ -0.61
SS18-207ENST00000577636 STAMQ92783 540 aa11.23□□□□□ -0.61
SS18-207ENST00000577636 ZNF577Q9BSK1 485 aa11.23□□□□□ -0.61
SS18-207ENST00000577636 FTHL17Q9BXU8 183 aa11.23□□□□□ -0.61
SS18-207ENST00000577636 TLR9Q9NR96 1032 aa11.23□□□□□ -0.61
SS18-207ENST00000577636 EXOC1Q9NV70 894 aa11.23□□□□□ -0.61
SS18-207ENST00000577636 KBTBD4Q9NVX7 518 aa11.23□□□□□ -0.61
SS18-207ENST00000577636 TRPC6Q9Y210 931 aa11.23□□□□□ -0.61
SS18-207ENST00000577636 PCDHB12Q9Y5F1 795 aa11.23□□□□□ -0.61
SS18-207ENST00000577636 FRMPD4Q14CM0 1322 aa11.23□□□□□ -0.61
SS18-207ENST00000577636 A0A087WWV3 80 aa11.22□□□□□ -0.61
SS18-207ENST00000577636 MBLAC1A4D2B0 266 aaPredicted RBP11.22□□□□□ -0.61
SS18-207ENST00000577636 MSH4O15457 936 aa11.22□□□□□ -0.61
SS18-207ENST00000577636 EDIL3O43854 480 aa11.22□□□□□ -0.61
SS18-207ENST00000577636 KCNA2P16389 499 aa11.22□□□□□ -0.61
SS18-207ENST00000577636 CDK11BP21127 795 aaKnown RBP11.22□□□□□ -0.61
SS18-207ENST00000577636 ASIC1P78348 528 aa11.22□□□□□ -0.61
SS18-207ENST00000577636 CUL4BQ13620 913 aa11.22□□□□□ -0.61
SS18-207ENST00000577636 DHX8Q14562 1220 aaKnown RBP11.22□□□□□ -0.61
SS18-207ENST00000577636 CBX2Q14781 532 aaPredicted RBP11.22□□□□□ -0.61
SS18-207ENST00000577636 RALGAPA2Q2PPJ7 1873 aa11.22□□□□□ -0.61
SS18-207ENST00000577636 ZNF658Q5TYW1 1059 aaPredicted RBP11.22□□□□□ -0.61
SS18-207ENST00000577636 LLGL2Q6P1M3 1020 aa11.22□□□□□ -0.61
SS18-207ENST00000577636 CNNM4Q6P4Q7 775 aa11.22□□□□□ -0.61
SS18-207ENST00000577636 THNSL1Q8IYQ7 743 aa11.22□□□□□ -0.61
SS18-207ENST00000577636 ANKRD20A12PQ8NF67 263 aa11.22□□□□□ -0.61
SS18-207ENST00000577636 RAD54LQ92698 747 aa11.22□□□□□ -0.61
SS18-207ENST00000577636 CDHR1Q96JP9 859 aa11.22□□□□□ -0.61
SS18-207ENST00000577636 RIT2Q99578 217 aa11.22□□□□□ -0.61
SS18-207ENST00000577636 C7orf25Q9BPX7 421 aa11.22□□□□□ -0.61
SS18-207ENST00000577636 MXRA8Q9BRK3 442 aa11.22□□□□□ -0.61
SS18-207ENST00000577636 TEKT3Q9BXF9 490 aa11.22□□□□□ -0.61
SS18-207ENST00000577636 CELF4Q9BZC1 486 aaKnown RBP11.22□□□□□ -0.61
SS18-207ENST00000577636 AZI2Q9H6S1 392 aa11.22□□□□□ -0.61
SS18-207ENST00000577636 DNM3Q9UQ16 869 aa11.22□□□□□ -0.61
SS18-207ENST00000577636 KAT6AQ92794 2004 aa11.21□□□□□ -0.61
SS18-207ENST00000577636 DOCK5Q9H7D0 1870 aa11.21□□□□□ -0.61
SS18-207ENST00000577636 COL4A6Q14031 1691 aa11.21□□□□□ -0.61
SS18-207ENST00000577636 IGLV3-22A0A075B6J6 115 aa11.21□□□□□ -0.61
SS18-207ENST00000577636 MEIS1O00470 390 aa11.21□□□□□ -0.61
SS18-207ENST00000577636 SERPINC1P01008 464 aa11.21□□□□□ -0.61
SS18-207ENST00000577636 PDGFBP01127 241 aaPredicted RBP11.21□□□□□ -0.61
SS18-207ENST00000577636 SSBP05455 408 aaKnown RBP eCLIP11.21□□□□□ -0.61
SS18-207ENST00000577636 KRT18P05783 430 aaKnown RBP11.21□□□□□ -0.61
SS18-207ENST00000577636 ITGB5P18084 799 aa11.21□□□□□ -0.61
SS18-207ENST00000577636 CDC25BP30305 580 aa11.21□□□□□ -0.61
SS18-207ENST00000577636 ZNF75DP51815 510 aa11.21□□□□□ -0.61
SS18-207ENST00000577636 ERVFC1P60507 584 aa11.21□□□□□ -0.61
SS18-207ENST00000577636 MTMR1Q13613 665 aa11.21□□□□□ -0.61
SS18-207ENST00000577636 TMEM119Q4V9L6 283 aa11.21□□□□□ -0.61
SS18-207ENST00000577636 HYIQ5T013 277 aa11.21□□□□□ -0.61
SS18-207ENST00000577636 FAM102BQ5T8I3 360 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms