RNA–Protein interactions for RNA: ENST00000577572.5

SS18-206, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 510 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-206ENST00000577572 SRGAP2CP0DJJ0 459 aa16.73■□□□□ 0.27
SS18-206ENST00000577572 PSMC2P35998 433 aaKnown RBP16.73■□□□□ 0.27
SS18-206ENST00000577572 MCCD1P59942 119 aaPredicted RBP16.73■□□□□ 0.27
SS18-206ENST00000577572 KCNJ12Q14500 433 aa16.73■□□□□ 0.27
SS18-206ENST00000577572 TAS1R3Q7RTX0 852 aa16.73■□□□□ 0.27
SS18-206ENST00000577572 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.73■□□□□ 0.27
SS18-206ENST00000577572 IRF2BP1Q8IU81 584 aa16.73■□□□□ 0.27
SS18-206ENST00000577572 ANKLE1Q8NAG6 615 aa16.73■□□□□ 0.27
SS18-206ENST00000577572 NLRP4Q96MN2 994 aa16.73■□□□□ 0.27
SS18-206ENST00000577572 KIFC3Q9BVG8 833 aa16.73■□□□□ 0.27
SS18-206ENST00000577572 GCOM2Q9BZD3 368 aaPredicted RBP16.73■□□□□ 0.27
SS18-206ENST00000577572 IFT122Q9HBG6 1241 aa16.73■□□□□ 0.27
SS18-206ENST00000577572 FRMD4BQ9Y2L6 1034 aa16.73■□□□□ 0.27
SS18-206ENST00000577572 MYH11P35749 1972 aa16.73■□□□□ 0.27
SS18-206ENST00000577572 A0A1W2PQ45 241 aaPredicted RBP16.72■□□□□ 0.27
SS18-206ENST00000577572 A0A1W2PQY0 241 aa16.72■□□□□ 0.27
SS18-206ENST00000577572 HNRNPDLO14979 420 aaKnown RBP16.72■□□□□ 0.27
SS18-206ENST00000577572 LDHAP00338 332 aaKnown RBP16.72■□□□□ 0.27
SS18-206ENST00000577572 CDC25BP30305 580 aa16.72■□□□□ 0.27
SS18-206ENST00000577572 LIG4P49917 911 aa16.72■□□□□ 0.27
SS18-206ENST00000577572 CRYBB1P53674 252 aaPredicted RBP16.72■□□□□ 0.27
SS18-206ENST00000577572 CHMP4BP1P59074 171 aa16.72■□□□□ 0.27
SS18-206ENST00000577572 POU5F1Q01860 360 aaKnown RBP16.72■□□□□ 0.27
SS18-206ENST00000577572 MBTD1Q05BQ5 628 aa16.72■□□□□ 0.27
SS18-206ENST00000577572 NCBP1Q09161 790 aaKnown RBP16.72■□□□□ 0.27
SS18-206ENST00000577572 PTK7Q13308 1070 aa16.72■□□□□ 0.27
SS18-206ENST00000577572 TSHZ1Q6ZSZ6 1077 aa16.72■□□□□ 0.27
SS18-206ENST00000577572 XXYLT1Q8NBI6 393 aa16.72■□□□□ 0.27
SS18-206ENST00000577572 DEFB118Q96PH6 123 aa16.72■□□□□ 0.27
SS18-206ENST00000577572 TRIM5Q9C035 493 aa16.72■□□□□ 0.27
SS18-206ENST00000577572 ADAMTS10Q9H324 1103 aa16.72■□□□□ 0.27
SS18-206ENST00000577572 STARD7Q9NQZ5 370 aa16.72■□□□□ 0.27
SS18-206ENST00000577572 GRIN2DO15399 1336 aa16.71■□□□□ 0.27
SS18-206ENST00000577572 A0A1B0GTH6 734 aa16.71■□□□□ 0.27
SS18-206ENST00000577572 M0QZ92 97 aa16.71■□□□□ 0.27
SS18-206ENST00000577572 GPR32O75388 356 aa16.71■□□□□ 0.27
SS18-206ENST00000577572 TOM1L1O75674 476 aa16.71■□□□□ 0.27
SS18-206ENST00000577572 SGPL1O95470 568 aa16.71■□□□□ 0.27
SS18-206ENST00000577572 PRKCBP05771 671 aa16.71■□□□□ 0.27
SS18-206ENST00000577572 EPB41P11171 864 aaKnown RBP16.71■□□□□ 0.27
SS18-206ENST00000577572 ATP1A3P13637 1013 aa16.71■□□□□ 0.27
SS18-206ENST00000577572 UBASH3AP57075 661 aa16.71■□□□□ 0.27
SS18-206ENST00000577572 NLRP11P59045 1033 aaKnown RBP16.71■□□□□ 0.27
SS18-206ENST00000577572 KYAT1Q16773 422 aa16.71■□□□□ 0.27
SS18-206ENST00000577572 FAM47CQ5HY64 1035 aa16.71■□□□□ 0.27
SS18-206ENST00000577572 GDF6Q6KF10 455 aaPredicted RBP16.71■□□□□ 0.27
SS18-206ENST00000577572 ARMCX5Q6P1M9 558 aa16.71■□□□□ 0.27
SS18-206ENST00000577572 APBB1IPQ7Z5R6 666 aaPredicted RBP16.71■□□□□ 0.27
SS18-206ENST00000577572 USP37Q86T82 979 aa16.71■□□□□ 0.27
SS18-206ENST00000577572 KSR1Q8IVT5 923 aa16.71■□□□□ 0.27
SS18-206ENST00000577572 NLRP7Q8WX94 980 aa16.71■□□□□ 0.27
SS18-206ENST00000577572 VTI1AQ96AJ9 217 aa16.71■□□□□ 0.27
SS18-206ENST00000577572 BICD1Q96G01 975 aa16.71■□□□□ 0.27
SS18-206ENST00000577572 CNOT6LQ96LI5 555 aaKnown RBP16.71■□□□□ 0.27
SS18-206ENST00000577572 FBXL18Q96ME1 805 aa16.71■□□□□ 0.27
SS18-206ENST00000577572 PCNTO95613 3336 aa16.7■□□□□ 0.26
SS18-206ENST00000577572 A0A087WZ62 844 aa16.7■□□□□ 0.26
SS18-206ENST00000577572 INO80B-WBP1J3KQ70 363 aa16.7■□□□□ 0.26
SS18-206ENST00000577572 ARVCFO00192 962 aa16.7■□□□□ 0.26
SS18-206ENST00000577572 VTNP04004 478 aa16.7■□□□□ 0.26
SS18-206ENST00000577572 MYCNP04198 464 aaPredicted RBP16.7■□□□□ 0.26
SS18-206ENST00000577572 EIF4BP23588 611 aaKnown RBP16.7■□□□□ 0.26
SS18-206ENST00000577572 AXLP30530 894 aa16.7■□□□□ 0.26
SS18-206ENST00000577572 ZNF75DP51815 510 aa16.7■□□□□ 0.26
SS18-206ENST00000577572 CCDC173Q0VFZ6 552 aa16.7■□□□□ 0.26
SS18-206ENST00000577572 PRPF4BQ13523 1007 aaKnown RBP16.7■□□□□ 0.26
SS18-206ENST00000577572 HIC1Q14526 733 aa16.7■□□□□ 0.26
SS18-206ENST00000577572 KRT31Q15323 416 aa16.7■□□□□ 0.26
SS18-206ENST00000577572 MTFR1Q15390 333 aa16.7■□□□□ 0.26
SS18-206ENST00000577572 PTGISQ16647 500 aa16.7■□□□□ 0.26
SS18-206ENST00000577572 MAN2A1Q16706 1144 aa16.7■□□□□ 0.26
SS18-206ENST00000577572 INTS8Q75QN2 995 aaKnown RBP16.7■□□□□ 0.26
SS18-206ENST00000577572 APTXQ7Z2E3 356 aaKnown RBP16.7■□□□□ 0.26
SS18-206ENST00000577572 DNAJB3Q8WWF6 145 aa16.7■□□□□ 0.26
SS18-206ENST00000577572 FDXACB1Q9BRP7 624 aaPredicted RBP16.7■□□□□ 0.26
SS18-206ENST00000577572 HSPBP1Q9NZL4 362 aa16.7■□□□□ 0.26
SS18-206ENST00000577572 ARMCX3Q9UH62 379 aaPredicted RBP16.7■□□□□ 0.26
SS18-206ENST00000577572 TNFSF13BQ9Y275 285 aa16.7■□□□□ 0.26
SS18-206ENST00000577572 SQORQ9Y6N5 450 aa16.7■□□□□ 0.26
SS18-206ENST00000577572 MROH7Q68CQ1 1323 aa16.7■□□□□ 0.26
SS18-206ENST00000577572 CNTNAP2Q9UHC6 1331 aa16.7■□□□□ 0.26
SS18-206ENST00000577572 KAT6AQ92794 2004 aa16.69■□□□□ 0.26
SS18-206ENST00000577572 EXOC3O60645 756 aa16.69■□□□□ 0.26
SS18-206ENST00000577572 ADCY5O95622 1261 aa16.69■□□□□ 0.26
SS18-206ENST00000577572 DARSP14868 501 aaKnown RBP16.69■□□□□ 0.26
SS18-206ENST00000577572 PROZP22891 400 aa16.69■□□□□ 0.26
SS18-206ENST00000577572 SFPQP23246 707 aaKnown RBP eCLIP16.69■□□□□ 0.26
SS18-206ENST00000577572 MTIF2P46199 727 aaKnown RBP16.69■□□□□ 0.26
SS18-206ENST00000577572 CDK7P50613 346 aa16.69■□□□□ 0.26
SS18-206ENST00000577572 MRPS6P82932 125 aaKnown RBP16.69■□□□□ 0.26
SS18-206ENST00000577572 PLCB2Q00722 1185 aa16.69■□□□□ 0.26
SS18-206ENST00000577572 RBL2Q08999 1139 aa16.69■□□□□ 0.26
SS18-206ENST00000577572 NR1I3Q14994 352 aa16.69■□□□□ 0.26
SS18-206ENST00000577572 CCDC40Q4G0X9 1142 aa16.69■□□□□ 0.26
SS18-206ENST00000577572 C1orf53Q5VUE5 145 aa16.69■□□□□ 0.26
SS18-206ENST00000577572 RUFY4Q6ZNE9 571 aa16.69■□□□□ 0.26
SS18-206ENST00000577572 TRIM59Q8IWR1 403 aa16.69■□□□□ 0.26
SS18-206ENST00000577572 POMGNT1Q8WZA1 660 aa16.69■□□□□ 0.26
SS18-206ENST00000577572 BORCS6Q96GS4 357 aa16.69■□□□□ 0.26
SS18-206ENST00000577572 PDLIM2Q96JY6 352 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms