RNA–Protein interactions for RNA: ENST00000576241.1

CCDC40-216, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 714 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-216ENST00000576241 WDR81Q562E7 1941 aa15.29■□□□□ 0.04
CCDC40-216ENST00000576241 DNAH14Q0VDD8 3507 aa15.29■□□□□ 0.04
CCDC40-216ENST00000576241 ASAP2O43150 1006 aa15.28■□□□□ 0.04
CCDC40-216ENST00000576241 NEMFO60524 1076 aa15.28■□□□□ 0.04
CCDC40-216ENST00000576241 ZC3H11AO75152 810 aaKnown RBP eCLIP15.28■□□□□ 0.04
CCDC40-216ENST00000576241 SRGAP2CP0DJJ0 459 aa15.28■□□□□ 0.04
CCDC40-216ENST00000576241 CA8P35219 290 aa15.28■□□□□ 0.04
CCDC40-216ENST00000576241 BCAR1P56945 870 aa15.28■□□□□ 0.04
CCDC40-216ENST00000576241 RBM10P98175 930 aaKnown RBP15.28■□□□□ 0.04
CCDC40-216ENST00000576241 RNASELQ05823 741 aaKnown RBP15.28■□□□□ 0.04
CCDC40-216ENST00000576241 SPIRE1Q08AE8 756 aa15.28■□□□□ 0.04
CCDC40-216ENST00000576241 LAMTOR4Q0VGL1 99 aa15.28■□□□□ 0.04
CCDC40-216ENST00000576241 CTTNQ14247 550 aaKnown RBP15.28■□□□□ 0.04
CCDC40-216ENST00000576241 SMC1AQ14683 1233 aaKnown RBP15.28■□□□□ 0.04
CCDC40-216ENST00000576241 CALCRLQ16602 461 aa15.28■□□□□ 0.04
CCDC40-216ENST00000576241 LONRF3Q496Y0 759 aa15.28■□□□□ 0.04
CCDC40-216ENST00000576241 NOMO2Q5JPE7 1267 aa15.28■□□□□ 0.04
CCDC40-216ENST00000576241 SRGAP1Q7Z6B7 1085 aa15.28■□□□□ 0.04
CCDC40-216ENST00000576241 TPH2Q8IWU9 490 aa15.28■□□□□ 0.04
CCDC40-216ENST00000576241 DIS3L2Q8IYB7 885 aaKnown RBP15.28■□□□□ 0.04
CCDC40-216ENST00000576241 NSUN7Q8NE18 718 aaKnown RBP15.28■□□□□ 0.04
CCDC40-216ENST00000576241 VN1R2Q8NFZ6 395 aa15.28■□□□□ 0.04
CCDC40-216ENST00000576241 TNFRSF25Q93038 417 aa15.28■□□□□ 0.04
CCDC40-216ENST00000576241 LPPQ93052 612 aa15.28■□□□□ 0.04
CCDC40-216ENST00000576241 TMEM169Q96HH4 297 aa15.28■□□□□ 0.04
CCDC40-216ENST00000576241 CCDC43Q96MW1 224 aaKnown RBP15.28■□□□□ 0.04
CCDC40-216ENST00000576241 AGPAT5Q9NUQ2 364 aa15.28■□□□□ 0.04
CCDC40-216ENST00000576241 INPP5FQ9Y2H2 1132 aa15.28■□□□□ 0.04
CCDC40-216ENST00000576241 DMXL1Q9Y485 3027 aa15.27■□□□□ 0.04
CCDC40-216ENST00000576241 HIDE1A8MVS5 230 aa15.27■□□□□ 0.04
CCDC40-216ENST00000576241 ZNF623O75123 536 aa15.27■□□□□ 0.04
CCDC40-216ENST00000576241 TECP42680 631 aa15.27■□□□□ 0.04
CCDC40-216ENST00000576241 FOSBP53539 338 aa15.27■□□□□ 0.04
CCDC40-216ENST00000576241 LLGL2Q6P1M3 1020 aa15.27■□□□□ 0.04
CCDC40-216ENST00000576241 RNF149Q8NC42 400 aa15.27■□□□□ 0.04
CCDC40-216ENST00000576241 URGCPQ8TCY9 931 aa15.27■□□□□ 0.04
CCDC40-216ENST00000576241 RMDN1Q96DB5 314 aa15.27■□□□□ 0.04
CCDC40-216ENST00000576241 RPGRIP1Q96KN7 1286 aa15.27■□□□□ 0.04
CCDC40-216ENST00000576241 RIPOR3Q96MK2 946 aa15.27■□□□□ 0.04
CCDC40-216ENST00000576241 CNTNAP3BQ96NU0 1288 aa15.27■□□□□ 0.04
CCDC40-216ENST00000576241 MTRQ99707 1265 aa15.27■□□□□ 0.04
CCDC40-216ENST00000576241 EIF2AK1Q9BQI3 630 aaKnown RBP15.27■□□□□ 0.04
CCDC40-216ENST00000576241 PHF7Q9BWX1 381 aaPredicted RBP15.27■□□□□ 0.04
CCDC40-216ENST00000576241 CNTNAP3Q9BZ76 1288 aa15.27■□□□□ 0.04
CCDC40-216ENST00000576241 EP300Q09472 2414 aaPredicted RBP15.26■□□□□ 0.03
CCDC40-216ENST00000576241 BTBD18B2RXH4 712 aa15.26■□□□□ 0.03
CCDC40-216ENST00000576241 NT5C1B-RDH14C9J2C7 533 aa15.26■□□□□ 0.03
CCDC40-216ENST00000576241 JAK2O60674 1132 aa15.26■□□□□ 0.03
CCDC40-216ENST00000576241 ERLIN2O94905 339 aa15.26■□□□□ 0.03
CCDC40-216ENST00000576241 MXD4Q14582 209 aaPredicted RBP15.26■□□□□ 0.03
CCDC40-216ENST00000576241 SAFBQ15424 915 aaKnown RBP eCLIP15.26■□□□□ 0.03
CCDC40-216ENST00000576241 ANKRD54Q6NXT1 300 aa15.26■□□□□ 0.03
CCDC40-216ENST00000576241 TMEM184AQ6ZMB5 413 aa15.26■□□□□ 0.03
CCDC40-216ENST00000576241 DGLUCYQ7Z3D6 616 aa15.26■□□□□ 0.03
CCDC40-216ENST00000576241 MRPL43Q8N983 215 aaKnown RBP15.26■□□□□ 0.03
CCDC40-216ENST00000576241 TMEM87AQ8NBN3 555 aa15.26■□□□□ 0.03
CCDC40-216ENST00000576241 GBP3Q9H0R5 595 aa15.26■□□□□ 0.03
CCDC40-216ENST00000576241 TTC12Q9H892 705 aaPredicted RBP15.26■□□□□ 0.03
CCDC40-216ENST00000576241 TBC1D13Q9NVG8 400 aa15.26■□□□□ 0.03
CCDC40-216ENST00000576241 PCDHB2Q9Y5E7 798 aa15.26■□□□□ 0.03
CCDC40-216ENST00000576241 C2orf71A6NGG8 1288 aa15.25■□□□□ 0.03
CCDC40-216ENST00000576241 SLITRK3O94933 977 aa15.25■□□□□ 0.03
CCDC40-216ENST00000576241 HOXB8P17481 243 aaPredicted RBP15.25■□□□□ 0.03
CCDC40-216ENST00000576241 TXKP42681 527 aa15.25■□□□□ 0.03
CCDC40-216ENST00000576241 NCBP1Q09161 790 aaKnown RBP15.25■□□□□ 0.03
CCDC40-216ENST00000576241 KCNC3Q14003 757 aa15.25■□□□□ 0.03
CCDC40-216ENST00000576241 TFDP1Q14186 410 aa15.25■□□□□ 0.03
CCDC40-216ENST00000576241 PTPN21Q16825 1174 aa15.25■□□□□ 0.03
CCDC40-216ENST00000576241 TPRNQ4KMQ1 711 aa15.25■□□□□ 0.03
CCDC40-216ENST00000576241 FERMT3Q86UX7 667 aa15.25■□□□□ 0.03
CCDC40-216ENST00000576241 TMEM105Q8N8V8 129 aa15.25■□□□□ 0.03
CCDC40-216ENST00000576241 CASP10Q92851 521 aa15.25■□□□□ 0.03
CCDC40-216ENST00000576241 MINDY3Q9H8M7 445 aa15.25■□□□□ 0.03
CCDC40-216ENST00000576241 ZFHX4Q86UP3 3567 aa15.24■□□□□ 0.03
CCDC40-216ENST00000576241 CNTNAP2Q9UHC6 1331 aa15.24■□□□□ 0.03
CCDC40-216ENST00000576241 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP15.24■□□□□ 0.03
CCDC40-216ENST00000576241 MEIS3P2A8K0S8 358 aa15.24■□□□□ 0.03
CCDC40-216ENST00000576241 ZBTB39O15060 712 aa15.24■□□□□ 0.03
CCDC40-216ENST00000576241 OFD1O75665 1012 aa15.24■□□□□ 0.03
CCDC40-216ENST00000576241 LYPLA2O95372 231 aa15.24■□□□□ 0.03
CCDC40-216ENST00000576241 CXCL14O95715 111 aa15.24■□□□□ 0.03
CCDC40-216ENST00000576241 PCBP1Q15365 356 aaKnown RBP eCLIP15.24■□□□□ 0.03
CCDC40-216ENST00000576241 VPS52Q8N1B4 723 aa15.24■□□□□ 0.03
CCDC40-216ENST00000576241 SUSD6Q92537 303 aa15.24■□□□□ 0.03
CCDC40-216ENST00000576241 HSD17B14Q9BPX1 270 aa15.24■□□□□ 0.03
CCDC40-216ENST00000576241 APOL5Q9BWW9 433 aa15.24■□□□□ 0.03
CCDC40-216ENST00000576241 NRDE2Q9H7Z3 1164 aa15.24■□□□□ 0.03
CCDC40-216ENST00000576241 RSAD1Q9HA92 442 aa15.24■□□□□ 0.03
CCDC40-216ENST00000576241 ANKEF1Q9NU02 776 aa15.24■□□□□ 0.03
CCDC40-216ENST00000576241 KANSL3Q9P2N6 904 aa15.24■□□□□ 0.03
CCDC40-216ENST00000576241 LIMCH1Q9UPQ0 1083 aa15.24■□□□□ 0.03
CCDC40-216ENST00000576241 HCFC2Q9Y5Z7 792 aa15.24■□□□□ 0.03
CCDC40-216ENST00000576241 ACACBO00763 2458 aa15.24■□□□□ 0.03
CCDC40-216ENST00000576241 BAHCC1Q9P281 2608 aa15.23■□□□□ 0.03
CCDC40-216ENST00000576241 INO80B-WBP1J3KQ70 363 aa15.23■□□□□ 0.03
CCDC40-216ENST00000576241 DGAT1O75907 488 aa15.23■□□□□ 0.03
CCDC40-216ENST00000576241 GALTP07902 379 aa15.23■□□□□ 0.03
CCDC40-216ENST00000576241 AXLP30530 894 aa15.23■□□□□ 0.03
CCDC40-216ENST00000576241 HOXA11P31270 313 aaPredicted RBP15.23■□□□□ 0.03
CCDC40-216ENST00000576241 GIT2Q14161 759 aa15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms