RNA–Protein interactions for RNA: ENST00000574855.1

NUP88-209, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-209ENST00000574855 GAB3Q8WWW8 586 aa4.44□□□□□ -1.7
NUP88-209ENST00000574855 RSAD2Q8WXG1 361 aa4.44□□□□□ -1.7
NUP88-209ENST00000574855 USP7Q93009 1102 aa4.44□□□□□ -1.7
NUP88-209ENST00000574855 SORCS2Q96PQ0 1159 aa4.44□□□□□ -1.7
NUP88-209ENST00000574855 WNT8AQ9H1J5 351 aa4.44□□□□□ -1.7
NUP88-209ENST00000574855 SLKQ9H2G2 1235 aaPredicted RBP4.44□□□□□ -1.7
NUP88-209ENST00000574855 ZNF703Q9H7S9 590 aaPredicted RBP4.44□□□□□ -1.7
NUP88-209ENST00000574855 EMC7Q9NPA0 242 aa4.44□□□□□ -1.7
NUP88-209ENST00000574855 NCDNQ9UBB6 729 aa4.44□□□□□ -1.7
NUP88-209ENST00000574855 NOC2LQ9Y3T9 749 aaKnown RBP4.44□□□□□ -1.7
NUP88-209ENST00000574855 NUMBLQ9Y6R0 609 aa4.44□□□□□ -1.7
NUP88-209ENST00000574855 CCDC194A0A1B0GVG4 234 aa4.43□□□□□ -1.7
NUP88-209ENST00000574855 KRTAP23-1A1A580 65 aa4.43□□□□□ -1.7
NUP88-209ENST00000574855 PRSS38A1L453 326 aa4.43□□□□□ -1.7
NUP88-209ENST00000574855 NPIPB8E9PQR5 432 aa4.43□□□□□ -1.7
NUP88-209ENST00000574855 MTSS1O43312 755 aa4.43□□□□□ -1.7
NUP88-209ENST00000574855 NRP2O60462 931 aa4.43□□□□□ -1.7
NUP88-209ENST00000574855 PFKMP08237 780 aa4.43□□□□□ -1.7
NUP88-209ENST00000574855 GAAP10253 952 aa4.43□□□□□ -1.7
NUP88-209ENST00000574855 NRG3P56975 720 aa4.43□□□□□ -1.7
NUP88-209ENST00000574855 CD69Q07108 199 aa4.43□□□□□ -1.7
NUP88-209ENST00000574855 CRHR2Q13324 411 aa4.43□□□□□ -1.7
NUP88-209ENST00000574855 CNGB1Q14028 1251 aaPredicted RBP4.43□□□□□ -1.7
NUP88-209ENST00000574855 FAM50AQ14320 339 aaKnown RBP4.43□□□□□ -1.7
NUP88-209ENST00000574855 RRP1BQ14684 758 aaKnown RBP4.43□□□□□ -1.7
NUP88-209ENST00000574855 RALBP1Q15311 655 aa4.43□□□□□ -1.7
NUP88-209ENST00000574855 ELAVL1Q15717 326 aaKnown RBP4.43□□□□□ -1.7
NUP88-209ENST00000574855 LSM12Q3MHD2 195 aaKnown RBP4.43□□□□□ -1.7
NUP88-209ENST00000574855 CCDC178Q5BJE1 867 aa4.43□□□□□ -1.7
NUP88-209ENST00000574855 FKBP15Q5T1M5 1219 aa4.43□□□□□ -1.7
NUP88-209ENST00000574855 RASSF3Q86WH2 238 aa4.43□□□□□ -1.7
NUP88-209ENST00000574855 TMPRSS6Q8IU80 811 aa4.43□□□□□ -1.7
NUP88-209ENST00000574855 ZFPM1Q8IX07 1006 aa4.43□□□□□ -1.7
NUP88-209ENST00000574855 SMC5Q8IY18 1101 aa4.43□□□□□ -1.7
NUP88-209ENST00000574855 UNC5BQ8IZJ1 945 aa4.43□□□□□ -1.7
NUP88-209ENST00000574855 SLC5A5Q92911 643 aa4.43□□□□□ -1.7
NUP88-209ENST00000574855 PKNOX2Q96KN3 472 aa4.43□□□□□ -1.7
NUP88-209ENST00000574855 SCAND2PQ9GZW5 306 aaPredicted RBP4.43□□□□□ -1.7
NUP88-209ENST00000574855 PARPBPQ9NWS1 579 aa4.43□□□□□ -1.7
NUP88-209ENST00000574855 HECAQ9UBI9 543 aaPredicted RBP4.43□□□□□ -1.7
NUP88-209ENST00000574855 LAS1LQ9Y4W2 734 aaKnown RBP4.43□□□□□ -1.7
NUP88-209ENST00000574855 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP4.42□□□□□ -1.7
NUP88-209ENST00000574855 NRP1O14786 923 aa4.42□□□□□ -1.7
NUP88-209ENST00000574855 ZEB2O60315 1214 aa4.42□□□□□ -1.7
NUP88-209ENST00000574855 KDM1AO60341 852 aa4.42□□□□□ -1.7
NUP88-209ENST00000574855 ALDH1A2O94788 518 aa4.42□□□□□ -1.7
NUP88-209ENST00000574855 C1SP09871 688 aa4.42□□□□□ -1.7
NUP88-209ENST00000574855 HSD3B2P26439 372 aa4.42□□□□□ -1.7
NUP88-209ENST00000574855 SPIDRQ14159 915 aa4.42□□□□□ -1.7
NUP88-209ENST00000574855 ZBTB41Q5SVQ8 909 aa4.42□□□□□ -1.7
NUP88-209ENST00000574855 LMBR1LQ6UX01 489 aa4.42□□□□□ -1.7
NUP88-209ENST00000574855 CXorf67Q86X51 503 aaPredicted RBP4.42□□□□□ -1.7
NUP88-209ENST00000574855 CACTINQ8WUQ7 758 aaKnown RBP4.42□□□□□ -1.7
NUP88-209ENST00000574855 EVI5LQ96CN4 794 aa4.42□□□□□ -1.7
NUP88-209ENST00000574855 ZNF512Q96ME7 567 aaPredicted RBP4.42□□□□□ -1.7
NUP88-209ENST00000574855 TTC1Q99614 292 aa4.42□□□□□ -1.7
NUP88-209ENST00000574855 ANO3Q9BYT9 981 aa4.42□□□□□ -1.7
NUP88-209ENST00000574855 MS4A5Q9H3V2 200 aa4.42□□□□□ -1.7
NUP88-209ENST00000574855 IFT22Q9H7X7 185 aa4.42□□□□□ -1.7
NUP88-209ENST00000574855 ING3Q9NXR8 418 aa4.42□□□□□ -1.7
NUP88-209ENST00000574855 TERF2IPQ9NYB0 399 aa4.42□□□□□ -1.7
NUP88-209ENST00000574855 LCHNA4D1U4 455 aa4.41□□□□□ -1.7
NUP88-209ENST00000574855 IPO13O94829 963 aaKnown RBP4.41□□□□□ -1.7
NUP88-209ENST00000574855 LY86O95711 162 aa4.41□□□□□ -1.7
NUP88-209ENST00000574855 BPIP17213 487 aa4.41□□□□□ -1.7
NUP88-209ENST00000574855 GNAT2P19087 354 aa4.41□□□□□ -1.7
NUP88-209ENST00000574855 MCM7P33993 719 aa4.41□□□□□ -1.7
NUP88-209ENST00000574855 MAN2A2P49641 1150 aa4.41□□□□□ -1.7
NUP88-209ENST00000574855 DGCR2P98153 550 aa4.41□□□□□ -1.7
NUP88-209ENST00000574855 ABHD18Q0P651 414 aa4.41□□□□□ -1.7
NUP88-209ENST00000574855 TUBA3CQ13748 450 aa4.41□□□□□ -1.7
NUP88-209ENST00000574855 TUBA3EQ6PEY2 450 aa4.41□□□□□ -1.7
NUP88-209ENST00000574855 ELOA2Q8IYF1 753 aaPredicted RBP4.41□□□□□ -1.7
NUP88-209ENST00000574855 TMTC2Q8N394 836 aa4.41□□□□□ -1.7
NUP88-209ENST00000574855 OR5M3Q8NGP4 307 aa4.41□□□□□ -1.7
NUP88-209ENST00000574855 PMM1Q92871 262 aa4.41□□□□□ -1.7
NUP88-209ENST00000574855 NAP1L5Q96NT1 182 aaPredicted RBP4.41□□□□□ -1.7
NUP88-209ENST00000574855 GPR87Q9BY21 358 aa4.41□□□□□ -1.7
NUP88-209ENST00000574855 SLTMQ9NWH9 1034 aaKnown RBP eCLIP4.41□□□□□ -1.7
NUP88-209ENST00000574855 CHPF2Q9P2E5 772 aa4.41□□□□□ -1.7
NUP88-209ENST00000574855 PRSS50Q9UI38 385 aa4.41□□□□□ -1.7
NUP88-209ENST00000574855 GOLGA6L6A8MZA4 724 aa4.4□□□□□ -1.71
NUP88-209ENST00000574855 NEMP1O14524 444 aa4.4□□□□□ -1.71
NUP88-209ENST00000574855 HOXA3O43365 443 aaPredicted RBP4.4□□□□□ -1.71
NUP88-209ENST00000574855 NARSO43776 548 aaKnown RBP4.4□□□□□ -1.71
NUP88-209ENST00000574855 PPFIA4O75335 1185 aa4.4□□□□□ -1.71
NUP88-209ENST00000574855 ULK1O75385 1050 aa4.4□□□□□ -1.71
NUP88-209ENST00000574855 SEC24DO94855 1032 aaPredicted RBP4.4□□□□□ -1.71
NUP88-209ENST00000574855 ZNF202O95125 648 aa4.4□□□□□ -1.71
NUP88-209ENST00000574855 PTMSP20962 102 aa4.4□□□□□ -1.71
NUP88-209ENST00000574855 SOX5P35711 763 aa4.4□□□□□ -1.71
NUP88-209ENST00000574855 SCNN1GP51170 649 aa4.4□□□□□ -1.71
NUP88-209ENST00000574855 MANFP55145 182 aaKnown RBP4.4□□□□□ -1.71
NUP88-209ENST00000574855 SESN3P58005 492 aa4.4□□□□□ -1.71
NUP88-209ENST00000574855 PPARAQ07869 468 aa4.4□□□□□ -1.71
NUP88-209ENST00000574855 MGAT5Q09328 741 aa4.4□□□□□ -1.71
NUP88-209ENST00000574855 STRN3Q13033 797 aa4.4□□□□□ -1.71
NUP88-209ENST00000574855 HSP90AB2PQ58FF8 381 aa4.4□□□□□ -1.71
NUP88-209ENST00000574855 CCDC62Q6P9F0 684 aa4.4□□□□□ -1.71
NUP88-209ENST00000574855 Q6ZRM9 215 aa4.4□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms