RNA–Protein interactions for RNA: ENST00000571545.1

CIITA-207, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 3

Gene CIITA, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-207ENST00000571545 PHF7Q9BWX1 381 aaPredicted RBP10.84□□□□□ -0.67
CIITA-207ENST00000571545 RAB34Q9BZG1 259 aa10.84□□□□□ -0.67
CIITA-207ENST00000571545 TRIM6Q9C030 488 aaPredicted RBP10.84□□□□□ -0.67
CIITA-207ENST00000571545 RSAD1Q9HA92 442 aa10.84□□□□□ -0.67
CIITA-207ENST00000571545 UPF2Q9HAU5 1272 aaKnown RBP10.84□□□□□ -0.67
CIITA-207ENST00000571545 DZANK1Q9NVP4 752 aa10.84□□□□□ -0.67
CIITA-207ENST00000571545 RGL1Q9NZL6 768 aa10.84□□□□□ -0.67
CIITA-207ENST00000571545 CLEC1BQ9P126 229 aa10.84□□□□□ -0.67
CIITA-207ENST00000571545 WRAP73Q9P2S5 460 aaPredicted RBP10.84□□□□□ -0.67
CIITA-207ENST00000571545 BARX2Q9UMQ3 279 aaPredicted RBP10.84□□□□□ -0.67
CIITA-207ENST00000571545 PCDHB2Q9Y5E7 798 aa10.84□□□□□ -0.67
CIITA-207ENST00000571545 FAM205CA6NFA0 338 aa10.83□□□□□ -0.68
CIITA-207ENST00000571545 NR1I2O75469 434 aa10.83□□□□□ -0.68
CIITA-207ENST00000571545 SLITRK3O94933 977 aa10.83□□□□□ -0.68
CIITA-207ENST00000571545 OR52Z1P0C646 297 aa10.83□□□□□ -0.68
CIITA-207ENST00000571545 NCLP19338 710 aaKnown RBP10.83□□□□□ -0.68
CIITA-207ENST00000571545 MCM7P33993 719 aa10.83□□□□□ -0.68
CIITA-207ENST00000571545 CA8P35219 290 aa10.83□□□□□ -0.68
CIITA-207ENST00000571545 RARRES1P49788 294 aa10.83□□□□□ -0.68
CIITA-207ENST00000571545 PTENP60484 403 aa10.83□□□□□ -0.68
CIITA-207ENST00000571545 ITIH3Q06033 890 aa10.83□□□□□ -0.68
CIITA-207ENST00000571545 HERC4Q5GLZ8 1057 aaPredicted RBP10.83□□□□□ -0.68
CIITA-207ENST00000571545 CES5AQ6NT32 575 aa10.83□□□□□ -0.68
CIITA-207ENST00000571545 ELMSAN1Q6PJG2 1045 aa10.83□□□□□ -0.68
CIITA-207ENST00000571545 MRPL10Q7Z7H8 261 aaKnown RBP10.83□□□□□ -0.68
CIITA-207ENST00000571545 DDX53Q86TM3 631 aaKnown RBP10.83□□□□□ -0.68
CIITA-207ENST00000571545 PPFIBP1Q86W92 1011 aa10.83□□□□□ -0.68
CIITA-207ENST00000571545 KSR1Q8IVT5 923 aa10.83□□□□□ -0.68
CIITA-207ENST00000571545 MTMR9Q96QG7 549 aa10.83□□□□□ -0.68
CIITA-207ENST00000571545 TMEM175Q9BSA9 504 aa10.83□□□□□ -0.68
CIITA-207ENST00000571545 CD320Q9NPF0 282 aa10.83□□□□□ -0.68
CIITA-207ENST00000571545 TBC1D13Q9NVG8 400 aa10.83□□□□□ -0.68
CIITA-207ENST00000571545 HCSTQ9UBK5 93 aa10.83□□□□□ -0.68
CIITA-207ENST00000571545 DBR1Q9UK59 544 aaKnown RBP10.83□□□□□ -0.68
CIITA-207ENST00000571545 SSX2IPQ9Y2D8 614 aa10.83□□□□□ -0.68
CIITA-207ENST00000571545 INPP5FQ9Y2H2 1132 aa10.83□□□□□ -0.68
CIITA-207ENST00000571545 USP15Q9Y4E8 981 aaPredicted RBP10.83□□□□□ -0.68
CIITA-207ENST00000571545 IRAK3Q9Y616 596 aa10.83□□□□□ -0.68
CIITA-207ENST00000571545 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP10.82□□□□□ -0.68
CIITA-207ENST00000571545 C2orf71A6NGG8 1288 aa10.82□□□□□ -0.68
CIITA-207ENST00000571545 INO80B-WBP1J3KQ70 363 aa10.82□□□□□ -0.68
CIITA-207ENST00000571545 PER2O15055 1255 aa10.82□□□□□ -0.68
CIITA-207ENST00000571545 ST18O60284 1047 aa10.82□□□□□ -0.68
CIITA-207ENST00000571545 OFD1O75665 1012 aa10.82□□□□□ -0.68
CIITA-207ENST00000571545 CTSAP10619 480 aa10.82□□□□□ -0.68
CIITA-207ENST00000571545 ITGA4P13612 1032 aa10.82□□□□□ -0.68
CIITA-207ENST00000571545 PLA2G5P39877 138 aa10.82□□□□□ -0.68
CIITA-207ENST00000571545 TECP42680 631 aa10.82□□□□□ -0.68
CIITA-207ENST00000571545 CBX2Q14781 532 aaPredicted RBP10.82□□□□□ -0.68
CIITA-207ENST00000571545 ANKRD54Q6NXT1 300 aa10.82□□□□□ -0.68
CIITA-207ENST00000571545 NOSTRINQ8IVI9 506 aa10.82□□□□□ -0.68
CIITA-207ENST00000571545 CCDC83Q8IWF9 413 aa10.82□□□□□ -0.68
CIITA-207ENST00000571545 ZBTB8OSQ8IWT0 167 aa10.82□□□□□ -0.68
CIITA-207ENST00000571545 VPS52Q8N1B4 723 aa10.82□□□□□ -0.68
CIITA-207ENST00000571545 MRPL43Q8N983 215 aaKnown RBP10.82□□□□□ -0.68
CIITA-207ENST00000571545 FBXO18Q8NFZ0 1043 aa10.82□□□□□ -0.68
CIITA-207ENST00000571545 FAM122AQ96E09 287 aa10.82□□□□□ -0.68
CIITA-207ENST00000571545 IGSF21Q96ID5 467 aa10.82□□□□□ -0.68
CIITA-207ENST00000571545 PRIMPOLQ96LW4 560 aa10.82□□□□□ -0.68
CIITA-207ENST00000571545 NACC1Q96RE7 527 aa10.82□□□□□ -0.68
CIITA-207ENST00000571545 POLR3CQ9BUI4 534 aaPredicted RBP10.82□□□□□ -0.68
CIITA-207ENST00000571545 EMILIN2Q9BXX0 1053 aa10.82□□□□□ -0.68
CIITA-207ENST00000571545 C2orf40Q9H1Z8 148 aa10.82□□□□□ -0.68
CIITA-207ENST00000571545 KCNH6Q9H252 994 aa10.82□□□□□ -0.68
CIITA-207ENST00000571545 BMP2KQ9NSY1 1161 aaPredicted RBP10.82□□□□□ -0.68
CIITA-207ENST00000571545 DPP7Q9UHL4 492 aa10.82□□□□□ -0.68
CIITA-207ENST00000571545 NR2E1Q9Y466 385 aa10.82□□□□□ -0.68
CIITA-207ENST00000571545 PCDHGC5Q9Y5F6 944 aa10.82□□□□□ -0.68
CIITA-207ENST00000571545 TDRD15B5MCY1 1934 aaKnown RBP10.82□□□□□ -0.68
CIITA-207ENST00000571545 POTEMA6NI47 508 aa10.81□□□□□ -0.68
CIITA-207ENST00000571545 LOC730098B7Z3J9 87 aa10.81□□□□□ -0.68
CIITA-207ENST00000571545 LAD1O00515 517 aa10.81□□□□□ -0.68
CIITA-207ENST00000571545 INPPL1O15357 1258 aa10.81□□□□□ -0.68
CIITA-207ENST00000571545 USO1O60763 962 aaKnown RBP10.81□□□□□ -0.68
CIITA-207ENST00000571545 GALTP07902 379 aa10.81□□□□□ -0.68
CIITA-207ENST00000571545 RPA1P27694 616 aa10.81□□□□□ -0.68
CIITA-207ENST00000571545 PBX3P40426 434 aa10.81□□□□□ -0.68
CIITA-207ENST00000571545 FOSBP53539 338 aa10.81□□□□□ -0.68
CIITA-207ENST00000571545 CAPSQ13938 189 aa10.81□□□□□ -0.68
CIITA-207ENST00000571545 KCNC3Q14003 757 aa10.81□□□□□ -0.68
CIITA-207ENST00000571545 PPP2R5AQ15172 486 aa10.81□□□□□ -0.68
CIITA-207ENST00000571545 RABEP1Q15276 862 aa10.81□□□□□ -0.68
CIITA-207ENST00000571545 TTC38Q5R3I4 469 aa10.81□□□□□ -0.68
CIITA-207ENST00000571545 APBB1IPQ7Z5R6 666 aaPredicted RBP10.81□□□□□ -0.68
CIITA-207ENST00000571545 ZNF579Q8NAF0 562 aaKnown RBP10.81□□□□□ -0.68
CIITA-207ENST00000571545 SUSD6Q92537 303 aa10.81□□□□□ -0.68
CIITA-207ENST00000571545 KHSRPQ92945 711 aaKnown RBP eCLIP10.81□□□□□ -0.68
CIITA-207ENST00000571545 LPPQ93052 612 aa10.81□□□□□ -0.68
CIITA-207ENST00000571545 RIPOR3Q96MK2 946 aa10.81□□□□□ -0.68
CIITA-207ENST00000571545 ZBP1Q9H171 429 aa10.81□□□□□ -0.68
CIITA-207ENST00000571545 CSRNP2Q9H175 543 aa10.81□□□□□ -0.68
CIITA-207ENST00000571545 POLR3FQ9H1D9 316 aaPredicted RBP10.81□□□□□ -0.68
CIITA-207ENST00000571545 NRDE2Q9H7Z3 1164 aa10.81□□□□□ -0.68
CIITA-207ENST00000571545 XPNPEP1Q9NQW7 623 aa10.81□□□□□ -0.68
CIITA-207ENST00000571545 PRMT7Q9NVM4 692 aaPredicted RBP10.81□□□□□ -0.68
CIITA-207ENST00000571545 GIT1Q9Y2X7 761 aa10.81□□□□□ -0.68
CIITA-207ENST00000571545 PHLPP2Q6ZVD8 1323 aa10.81□□□□□ -0.68
CIITA-207ENST00000571545 ARHGEF35A5YM69 484 aa10.8□□□□□ -0.68
CIITA-207ENST00000571545 LRRIQ4A6NIV6 560 aa10.8□□□□□ -0.68
CIITA-207ENST00000571545 HIDE1A8MVS5 230 aa10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms