RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 SFPQP23246 707 aaKnown RBP eCLIP22.74■■□□□ 1.23
VPS53-210ENST00000571456 GLRA2P23416 452 aa22.74■■□□□ 1.23
VPS53-210ENST00000571456 SYKP43405 635 aa22.74■■□□□ 1.23
VPS53-210ENST00000571456 MBTPS1Q14703 1052 aa22.74■■□□□ 1.23
VPS53-210ENST00000571456 FSIP1Q8NA03 581 aa22.74■■□□□ 1.23
VPS53-210ENST00000571456 DHX58Q96C10 678 aa22.74■■□□□ 1.23
VPS53-210ENST00000571456 MFSD14AQ96MC6 490 aa22.74■■□□□ 1.23
VPS53-210ENST00000571456 PHOX2BQ99453 314 aa22.74■■□□□ 1.23
VPS53-210ENST00000571456 ZBED2Q9BTP6 218 aa22.74■■□□□ 1.23
VPS53-210ENST00000571456 IFIH1Q9BYX4 1025 aaKnown RBP22.74■■□□□ 1.23
VPS53-210ENST00000571456 RNF216Q9NWF9 866 aaPredicted RBP22.74■■□□□ 1.23
VPS53-210ENST00000571456 MTUS1Q9ULD2 1270 aa22.74■■□□□ 1.23
VPS53-210ENST00000571456 GINS2Q9Y248 185 aa22.74■■□□□ 1.23
VPS53-210ENST00000571456 ZFHX2Q9C0A1 2572 aaPredicted RBP22.73■■□□□ 1.23
VPS53-210ENST00000571456 A0A087X0B3 334 aa22.73■■□□□ 1.23
VPS53-210ENST00000571456 A0A1B0GVL5 298 aa22.73■■□□□ 1.23
VPS53-210ENST00000571456 ABHD14A-ACY1A0A1B0GW23 586 aa22.73■■□□□ 1.23
VPS53-210ENST00000571456 HIP1RO75146 1068 aa22.73■■□□□ 1.23
VPS53-210ENST00000571456 SLFN14P0C7P3 912 aa22.73■■□□□ 1.23
VPS53-210ENST00000571456 EFNA5P52803 228 aa22.73■■□□□ 1.23
VPS53-210ENST00000571456 SMTNP53814 917 aa22.73■■□□□ 1.23
VPS53-210ENST00000571456 PTENP60484 403 aa22.73■■□□□ 1.23
VPS53-210ENST00000571456 PAK2Q13177 524 aa22.73■■□□□ 1.23
VPS53-210ENST00000571456 DMP1Q13316 513 aaPredicted RBP22.73■■□□□ 1.23
VPS53-210ENST00000571456 LPIN1Q14693 890 aa22.73■■□□□ 1.23
VPS53-210ENST00000571456 KANK3Q6NY19 840 aa22.73■■□□□ 1.23
VPS53-210ENST00000571456 CNNM4Q6P4Q7 775 aa22.73■■□□□ 1.23
VPS53-210ENST00000571456 ZBTB8OSQ8IWT0 167 aa22.73■■□□□ 1.23
VPS53-210ENST00000571456 RNF149Q8NC42 400 aa22.73■■□□□ 1.23
VPS53-210ENST00000571456 NLRP4Q96MN2 994 aa22.73■■□□□ 1.23
VPS53-210ENST00000571456 TGS1Q96RS0 853 aaKnown RBP22.73■■□□□ 1.23
VPS53-210ENST00000571456 OSMRQ99650 979 aa22.73■■□□□ 1.23
VPS53-210ENST00000571456 PANK2Q9BZ23 570 aa22.73■■□□□ 1.23
VPS53-210ENST00000571456 A0A087WZ62 844 aa22.72■■□□□ 1.23
VPS53-210ENST00000571456 GOLGA6L22H0YM25 854 aa22.72■■□□□ 1.23
VPS53-210ENST00000571456 TBCAO75347 108 aaKnown RBP22.72■■□□□ 1.23
VPS53-210ENST00000571456 GHRP10912 638 aa22.72■■□□□ 1.23
VPS53-210ENST00000571456 ERVK-21P61565 698 aa22.72■■□□□ 1.23
VPS53-210ENST00000571456 IKBKEQ14164 716 aa22.72■■□□□ 1.23
VPS53-210ENST00000571456 GPNMBQ14956 572 aa22.72■■□□□ 1.23
VPS53-210ENST00000571456 ARSHQ5FYA8 562 aa22.72■■□□□ 1.23
VPS53-210ENST00000571456 LRRC15Q8TF66 581 aa22.72■■□□□ 1.23
VPS53-210ENST00000571456 SPIRE2Q8WWL2 714 aa22.72■■□□□ 1.23
VPS53-210ENST00000571456 KCNN1Q92952 543 aa22.72■■□□□ 1.23
VPS53-210ENST00000571456 FDXACB1Q9BRP7 624 aaPredicted RBP22.72■■□□□ 1.23
VPS53-210ENST00000571456 NTPCRQ9BSD7 190 aaKnown RBP22.72■■□□□ 1.23
VPS53-210ENST00000571456 IFT122Q9HBG6 1241 aa22.72■■□□□ 1.23
VPS53-210ENST00000571456 PTPRZ1P23471 2315 aaPredicted RBP22.72■■□□□ 1.23
VPS53-210ENST00000571456 TECTAO75443 2155 aa22.72■■□□□ 1.23
VPS53-210ENST00000571456 CACNA1HO95180 2353 aa22.71■■□□□ 1.23
VPS53-210ENST00000571456 SRGAP2CP0DJJ0 459 aa22.71■■□□□ 1.23
VPS53-210ENST00000571456 PLS3P13797 630 aa22.71■■□□□ 1.23
VPS53-210ENST00000571456 GAP43P17677 238 aa22.71■■□□□ 1.23
VPS53-210ENST00000571456 ZNF131P52739 623 aa22.71■■□□□ 1.23
VPS53-210ENST00000571456 WDR5P61964 334 aaKnown RBP22.71■■□□□ 1.23
VPS53-210ENST00000571456 UBE2HP62256 183 aa22.71■■□□□ 1.23
VPS53-210ENST00000571456 NCBP1Q09161 790 aaKnown RBP22.71■■□□□ 1.23
VPS53-210ENST00000571456 CAPSQ13938 189 aa22.71■■□□□ 1.23
VPS53-210ENST00000571456 DHX8Q14562 1220 aaKnown RBP22.71■■□□□ 1.23
VPS53-210ENST00000571456 CDCA2Q69YH5 1023 aaPredicted RBP22.71■■□□□ 1.23
VPS53-210ENST00000571456 MAEAQ7L5Y9 396 aa22.71■■□□□ 1.23
VPS53-210ENST00000571456 TMCO2Q7Z6W1 182 aaPredicted RBP22.71■■□□□ 1.23
VPS53-210ENST00000571456 ASAP3Q8TDY4 903 aa22.71■■□□□ 1.23
VPS53-210ENST00000571456 PRIMPOLQ96LW4 560 aa22.71■■□□□ 1.23
VPS53-210ENST00000571456 REEP2Q9BRK0 252 aa22.71■■□□□ 1.23
VPS53-210ENST00000571456 PARVGQ9HBI0 331 aa22.71■■□□□ 1.23
VPS53-210ENST00000571456 GPRC5CQ9NQ84 441 aa22.71■■□□□ 1.23
VPS53-210ENST00000571456 CHST12Q9NRB3 414 aa22.71■■□□□ 1.23
VPS53-210ENST00000571456 SEL1LQ9UBV2 794 aa22.71■■□□□ 1.23
VPS53-210ENST00000571456 MICAL3Q7RTP6 2002 aa22.7■■□□□ 1.23
VPS53-210ENST00000571456 FAM13AO94988 1023 aa22.7■■□□□ 1.22
VPS53-210ENST00000571456 NDUFA8P51970 172 aa22.7■■□□□ 1.22
VPS53-210ENST00000571456 ZP2Q05996 745 aa22.7■■□□□ 1.22
VPS53-210ENST00000571456 FAM160A1Q05DH4 1040 aa22.7■■□□□ 1.22
VPS53-210ENST00000571456 MAPK7Q13164 816 aa22.7■■□□□ 1.22
VPS53-210ENST00000571456 GIT2Q14161 759 aa22.7■■□□□ 1.22
VPS53-210ENST00000571456 DAW1Q8N136 415 aa22.7■■□□□ 1.22
VPS53-210ENST00000571456 DBF4BQ8NFT6 615 aa22.7■■□□□ 1.22
VPS53-210ENST00000571456 DEPTORQ8TB45 409 aa22.7■■□□□ 1.22
VPS53-210ENST00000571456 DDX12PQ92771 950 aa22.7■■□□□ 1.22
VPS53-210ENST00000571456 ERVK-5Q9HDB9 667 aa22.7■■□□□ 1.22
VPS53-210ENST00000571456 PADI3Q9ULW8 664 aa22.7■■□□□ 1.22
VPS53-210ENST00000571456 NOC2LQ9Y3T9 749 aaKnown RBP22.7■■□□□ 1.22
VPS53-210ENST00000571456 MYO7AQ13402 2215 aa22.69■■□□□ 1.22
VPS53-210ENST00000571456 LRRIQ4A6NIV6 560 aa22.69■■□□□ 1.22
VPS53-210ENST00000571456 MAPTP10636 758 aaKnown RBP22.69■■□□□ 1.22
VPS53-210ENST00000571456 AXLP30530 894 aa22.69■■□□□ 1.22
VPS53-210ENST00000571456 KSR1Q8IVT5 923 aa22.69■■□□□ 1.22
VPS53-210ENST00000571456 TMEM40Q8WWA1 233 aa22.69■■□□□ 1.22
VPS53-210ENST00000571456 TIGD1Q96MW7 591 aa22.69■■□□□ 1.22
VPS53-210ENST00000571456 RAD9AQ99638 391 aa22.69■■□□□ 1.22
VPS53-210ENST00000571456 C7orf25Q9BPX7 421 aa22.69■■□□□ 1.22
VPS53-210ENST00000571456 CDHR5Q9HBB8 845 aa22.69■■□□□ 1.22
VPS53-210ENST00000571456 PRMT7Q9NVM4 692 aaPredicted RBP22.69■■□□□ 1.22
VPS53-210ENST00000571456 PRKAG3Q9UGI9 489 aa22.69■■□□□ 1.22
VPS53-210ENST00000571456 HOOK1Q9UJC3 728 aaKnown RBP22.69■■□□□ 1.22
VPS53-210ENST00000571456 ST3GAL5Q9UNP4 418 aa22.69■■□□□ 1.22
VPS53-210ENST00000571456 FAM50BQ9Y247 325 aa22.69■■□□□ 1.22
VPS53-210ENST00000571456 LINC01553A4QN01 128 aa22.68■■□□□ 1.22
VPS53-210ENST00000571456 H3BQ06 376 aaPredicted RBP22.68■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms