RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 TMEM98Q9Y2Y6 226 aa3.7□□□□□ -1.82
VPS35-208ENST00000568612 BRD4O60885 1362 aaPredicted RBP3.7□□□□□ -1.82
VPS35-208ENST00000568612 ROCK2O75116 1388 aaKnown RBP3.7□□□□□ -1.82
VPS35-208ENST00000568612 FHAD1B1AJZ9 1412 aa3.7□□□□□ -1.82
VPS35-208ENST00000568612 USP19O94966 1318 aa3.7□□□□□ -1.82
VPS35-208ENST00000568612 TNIKQ9UKE5 1360 aa3.69□□□□□ -1.82
VPS35-208ENST00000568612 C9orf118A6NHY6 69 aa3.69□□□□□ -1.82
VPS35-208ENST00000568612 F8VZ95 297 aa3.69□□□□□ -1.82
VPS35-208ENST00000568612 K7ESM1 405 aa3.69□□□□□ -1.82
VPS35-208ENST00000568612 B4GALT4O60513 344 aa3.69□□□□□ -1.82
VPS35-208ENST00000568612 RAB11FIP3O75154 756 aa3.69□□□□□ -1.82
VPS35-208ENST00000568612 WDHD1O75717 1129 aaPredicted RBP3.69□□□□□ -1.82
VPS35-208ENST00000568612 DNAJC8O75937 253 aaPredicted RBP3.69□□□□□ -1.82
VPS35-208ENST00000568612 NPTXRO95502 500 aa3.69□□□□□ -1.82
VPS35-208ENST00000568612 IL18BPO95998 194 aa3.69□□□□□ -1.82
VPS35-208ENST00000568612 C4BPAP04003 597 aaKnown RBP3.69□□□□□ -1.82
VPS35-208ENST00000568612 ASLP04424 464 aa3.69□□□□□ -1.82
VPS35-208ENST00000568612 MYL1P05976 194 aa3.69□□□□□ -1.82
VPS35-208ENST00000568612 IVLP07476 585 aa3.69□□□□□ -1.82
VPS35-208ENST00000568612 MMEP08473 750 aa3.69□□□□□ -1.82
VPS35-208ENST00000568612 HARSP12081 509 aaKnown RBP3.69□□□□□ -1.82
VPS35-208ENST00000568612 PECAM1P16284 738 aaPredicted RBP3.69□□□□□ -1.82
VPS35-208ENST00000568612 XBP1P17861 261 aa3.69□□□□□ -1.82
VPS35-208ENST00000568612 ADCY8P40145 1251 aa3.69□□□□□ -1.82
VPS35-208ENST00000568612 RRADP55042 308 aa3.69□□□□□ -1.82
VPS35-208ENST00000568612 NUCB2P80303 420 aa3.69□□□□□ -1.82
VPS35-208ENST00000568612 IRF9Q00978 393 aa3.69□□□□□ -1.82
VPS35-208ENST00000568612 NFATC3Q12968 1075 aa3.69□□□□□ -1.82
VPS35-208ENST00000568612 GPS2Q13227 327 aa3.69□□□□□ -1.82
VPS35-208ENST00000568612 PABPC4Q13310 644 aaKnown RBP eCLIP3.69□□□□□ -1.82
VPS35-208ENST00000568612 NEDD9Q14511 834 aa3.69□□□□□ -1.82
VPS35-208ENST00000568612 ZNF460Q14592 562 aa3.69□□□□□ -1.82
VPS35-208ENST00000568612 IQCB1Q15051 598 aa3.69□□□□□ -1.82
VPS35-208ENST00000568612 E2F5Q15329 346 aa3.69□□□□□ -1.82
VPS35-208ENST00000568612 SEC23AQ15436 765 aa3.69□□□□□ -1.82
VPS35-208ENST00000568612 TCEA2Q15560 299 aa3.69□□□□□ -1.82
VPS35-208ENST00000568612 ZRSR1Q15695 479 aaKnown RBP3.69□□□□□ -1.82
VPS35-208ENST00000568612 TEX35Q5T0J7 233 aa3.69□□□□□ -1.82
VPS35-208ENST00000568612 FSTL4Q6MZW2 842 aa3.69□□□□□ -1.82
VPS35-208ENST00000568612 ZCCHC8Q6NZY4 707 aaKnown RBP3.69□□□□□ -1.82
VPS35-208ENST00000568612 HHIPL2Q6UWX4 724 aa3.69□□□□□ -1.82
VPS35-208ENST00000568612 DPP8Q6V1X1 898 aaPredicted RBP3.69□□□□□ -1.82
VPS35-208ENST00000568612 SYNE3Q6ZMZ3 975 aa3.69□□□□□ -1.82
VPS35-208ENST00000568612 ARHGEF18Q6ZSZ5 1173 aa3.69□□□□□ -1.82
VPS35-208ENST00000568612 UBE2R2Q712K3 238 aaPredicted RBP3.69□□□□□ -1.82
VPS35-208ENST00000568612 OTOP2Q7RTS6 562 aa3.69□□□□□ -1.82
VPS35-208ENST00000568612 PLEKHH3Q7Z736 793 aa3.69□□□□□ -1.82
VPS35-208ENST00000568612 HOMER1Q86YM7 354 aa3.69□□□□□ -1.82
VPS35-208ENST00000568612 ANKRD18AQ8IVF6 992 aa3.69□□□□□ -1.82
VPS35-208ENST00000568612 KBTBD2Q8IY47 623 aa3.69□□□□□ -1.82
VPS35-208ENST00000568612 TTC30BQ8N4P2 665 aa3.69□□□□□ -1.82
VPS35-208ENST00000568612 GOLGA6L2Q8N9W4 650 aaPredicted RBP3.69□□□□□ -1.82
VPS35-208ENST00000568612 PRPF38AQ8NAV1 312 aaKnown RBP3.69□□□□□ -1.82
VPS35-208ENST00000568612 FBXO18Q8NFZ0 1043 aa3.69□□□□□ -1.82
VPS35-208ENST00000568612 NEK9Q8TD19 979 aa3.69□□□□□ -1.82
VPS35-208ENST00000568612 APPBP2Q92624 585 aa3.69□□□□□ -1.82
VPS35-208ENST00000568612 TAF4BQ92750 862 aa3.69□□□□□ -1.82
VPS35-208ENST00000568612 RNPC3Q96LT9 517 aaKnown RBP3.69□□□□□ -1.82
VPS35-208ENST00000568612 RSPH9Q9H1X1 276 aaPredicted RBP3.69□□□□□ -1.82
VPS35-208ENST00000568612 ZSCAN16Q9H4T2 348 aaPredicted RBP3.69□□□□□ -1.82
VPS35-208ENST00000568612 CABP5Q9NP86 173 aa3.69□□□□□ -1.82
VPS35-208ENST00000568612 INCENPQ9NQS7 918 aa3.69□□□□□ -1.82
VPS35-208ENST00000568612 KCNH7Q9NS40 1196 aa3.69□□□□□ -1.82
VPS35-208ENST00000568612 KCND1Q9NSA2 647 aa3.69□□□□□ -1.82
VPS35-208ENST00000568612 FANCLQ9NW38 375 aa3.69□□□□□ -1.82
VPS35-208ENST00000568612 TMEM260Q9NX78 707 aa3.69□□□□□ -1.82
VPS35-208ENST00000568612 LCMT1Q9UIC8 334 aa3.69□□□□□ -1.82
VPS35-208ENST00000568612 MCM8Q9UJA3 840 aa3.69□□□□□ -1.82
VPS35-208ENST00000568612 FBXO9Q9UK97 447 aaPredicted RBP3.69□□□□□ -1.82
VPS35-208ENST00000568612 BARX2Q9UMQ3 279 aaPredicted RBP3.69□□□□□ -1.82
VPS35-208ENST00000568612 RABL2BQ9UNT1 228 aa3.69□□□□□ -1.82
VPS35-208ENST00000568612 ITM2BQ9Y287 266 aa3.69□□□□□ -1.82
VPS35-208ENST00000568612 CD2APQ9Y5K6 639 aa3.69□□□□□ -1.82
VPS35-208ENST00000568612 MRPL42Q9Y6G3 142 aaKnown RBP3.69□□□□□ -1.82
VPS35-208ENST00000568612 RTEL1-TNFRSF6BF6WH68 1400 aa3.69□□□□□ -1.82
VPS35-208ENST00000568612 PRAMEF22A3QJZ6 481 aa3.68□□□□□ -1.82
VPS35-208ENST00000568612 PDLIM1O00151 329 aa3.68□□□□□ -1.82
VPS35-208ENST00000568612 PRRG2O14669 202 aa3.68□□□□□ -1.82
VPS35-208ENST00000568612 FOXP2O15409 715 aa3.68□□□□□ -1.82
VPS35-208ENST00000568612 KCNQ2O43526 872 aa3.68□□□□□ -1.82
VPS35-208ENST00000568612 GLRX3O76003 335 aaKnown RBP3.68□□□□□ -1.82
VPS35-208ENST00000568612 KNG1P01042 644 aa3.68□□□□□ -1.82
VPS35-208ENST00000568612 PYGLP06737 847 aa3.68□□□□□ -1.82
VPS35-208ENST00000568612 CCDC159P0C7I6 412 aa3.68□□□□□ -1.82
VPS35-208ENST00000568612 JMJD7P0C870 316 aa3.68□□□□□ -1.82
VPS35-208ENST00000568612 COL6A1P12109 1028 aa3.68□□□□□ -1.82
VPS35-208ENST00000568612 KCNA6P17658 529 aa3.68□□□□□ -1.82
VPS35-208ENST00000568612 SDSP20132 328 aa3.68□□□□□ -1.82
VPS35-208ENST00000568612 AOAHP28039 575 aa3.68□□□□□ -1.82
VPS35-208ENST00000568612 HOXD10P28358 340 aa3.68□□□□□ -1.82
VPS35-208ENST00000568612 BUD31P41223 144 aaPredicted RBP3.68□□□□□ -1.82
VPS35-208ENST00000568612 NEK4P51957 841 aa3.68□□□□□ -1.82
VPS35-208ENST00000568612 KIF11P52732 1056 aa3.68□□□□□ -1.82
VPS35-208ENST00000568612 MRPL12P52815 198 aaKnown RBP3.68□□□□□ -1.82
VPS35-208ENST00000568612 TPM4P67936 248 aa3.68□□□□□ -1.82
VPS35-208ENST00000568612 ZNF568Q3ZCX4 644 aa3.68□□□□□ -1.82
VPS35-208ENST00000568612 CFAP100Q494V2 611 aa3.68□□□□□ -1.82
VPS35-208ENST00000568612 TM4SF20Q53R12 229 aa3.68□□□□□ -1.82
VPS35-208ENST00000568612 AKNAD1Q5T1N1 836 aa3.68□□□□□ -1.82
VPS35-208ENST00000568612 LCE1DQ5T752 114 aa3.68□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms