RNA–Protein interactions for RNA: ENST00000567250.5

SF3B3-208, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 3

Gene SF3B3, Length 1,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-208ENST00000567250 CSDE1O75534 798 aaKnown RBP13.4□□□□□ -0.26
SF3B3-208ENST00000567250 MAPTP10636 758 aaKnown RBP13.4□□□□□ -0.26
SF3B3-208ENST00000567250 SARSP49591 514 aaKnown RBP13.4□□□□□ -0.26
SF3B3-208ENST00000567250 UBE2HP62256 183 aa13.4□□□□□ -0.26
SF3B3-208ENST00000567250 DEFB103AP81534 67 aa13.4□□□□□ -0.26
SF3B3-208ENST00000567250 PRPF4BQ13523 1007 aaKnown RBP13.4□□□□□ -0.26
SF3B3-208ENST00000567250 ALCAMQ13740 583 aa13.4□□□□□ -0.26
SF3B3-208ENST00000567250 RAB30Q15771 203 aa13.4□□□□□ -0.26
SF3B3-208ENST00000567250 TCTN1Q2MV58 587 aa13.4□□□□□ -0.26
SF3B3-208ENST00000567250 CNNM4Q6P4Q7 775 aa13.4□□□□□ -0.26
SF3B3-208ENST00000567250 NPAS4Q8IUM7 802 aa13.4□□□□□ -0.26
SF3B3-208ENST00000567250 HACE1Q8IYU2 909 aa13.4□□□□□ -0.26
SF3B3-208ENST00000567250 LINC01599Q8WXQ3 324 aa13.4□□□□□ -0.26
SF3B3-208ENST00000567250 RSPH1Q8WYR4 309 aa13.4□□□□□ -0.26
SF3B3-208ENST00000567250 KCNN1Q92952 543 aa13.4□□□□□ -0.26
SF3B3-208ENST00000567250 CCDC47Q96A33 483 aaKnown RBP13.4□□□□□ -0.26
SF3B3-208ENST00000567250 HVCN1Q96D96 273 aa13.4□□□□□ -0.26
SF3B3-208ENST00000567250 DNAJC19Q96DA6 116 aa13.4□□□□□ -0.26
SF3B3-208ENST00000567250 ADPGKQ9BRR6 497 aa13.4□□□□□ -0.26
SF3B3-208ENST00000567250 NTPCRQ9BSD7 190 aaKnown RBP13.4□□□□□ -0.26
SF3B3-208ENST00000567250 ZBED2Q9BTP6 218 aa13.4□□□□□ -0.26
SF3B3-208ENST00000567250 KIFC3Q9BVG8 833 aa13.4□□□□□ -0.26
SF3B3-208ENST00000567250 TRAIPQ9BWF2 469 aa13.4□□□□□ -0.26
SF3B3-208ENST00000567250 CCDC113Q9H0I3 377 aa13.4□□□□□ -0.26
SF3B3-208ENST00000567250 TMX1Q9H3N1 280 aa13.4□□□□□ -0.26
SF3B3-208ENST00000567250 FZD8Q9H461 694 aa13.4□□□□□ -0.26
SF3B3-208ENST00000567250 GOLPH3LQ9H4A5 285 aa13.4□□□□□ -0.26
SF3B3-208ENST00000567250 PANK4Q9NVE7 773 aa13.4□□□□□ -0.26
SF3B3-208ENST00000567250 SERTAD1Q9UHV2 236 aa13.4□□□□□ -0.26
SF3B3-208ENST00000567250 NLRC5Q86WI3 1866 aa13.4□□□□□ -0.26
SF3B3-208ENST00000567250 LAMA2P24043 3122 aaKnown RBP13.39□□□□□ -0.27
SF3B3-208ENST00000567250 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.39□□□□□ -0.27
SF3B3-208ENST00000567250 FRMD3A2A2Y4 597 aa13.39□□□□□ -0.27
SF3B3-208ENST00000567250 ACKR2O00590 384 aa13.39□□□□□ -0.27
SF3B3-208ENST00000567250 ENPP3O14638 875 aa13.39□□□□□ -0.27
SF3B3-208ENST00000567250 N4BP3O15049 544 aa13.39□□□□□ -0.27
SF3B3-208ENST00000567250 SLC16A4O15374 487 aa13.39□□□□□ -0.27
SF3B3-208ENST00000567250 KINO60870 393 aaKnown RBP13.39□□□□□ -0.27
SF3B3-208ENST00000567250 ZNF202O95125 648 aa13.39□□□□□ -0.27
SF3B3-208ENST00000567250 GJB5O95377 273 aa13.39□□□□□ -0.27
SF3B3-208ENST00000567250 ARF4P18085 180 aaPredicted RBP13.39□□□□□ -0.27
SF3B3-208ENST00000567250 LIG1P18858 919 aa13.39□□□□□ -0.27
SF3B3-208ENST00000567250 AFMP43652 599 aa13.39□□□□□ -0.27
SF3B3-208ENST00000567250 SMAD3P84022 425 aaKnown RBP13.39□□□□□ -0.27
SF3B3-208ENST00000567250 DSC3Q14574 896 aa13.39□□□□□ -0.27
SF3B3-208ENST00000567250 AMHR2Q16671 573 aa13.39□□□□□ -0.27
SF3B3-208ENST00000567250 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.39□□□□□ -0.277e-7■□□□□ 11.2
SF3B3-208ENST00000567250 KRBA2Q6ZNG9 492 aa13.39□□□□□ -0.27
SF3B3-208ENST00000567250 UNC13DQ70J99 1090 aa13.39□□□□□ -0.27
SF3B3-208ENST00000567250 HAUS6Q7Z4H7 955 aa13.39□□□□□ -0.27
SF3B3-208ENST00000567250 SFR1Q86XK3 245 aa13.39□□□□□ -0.27
SF3B3-208ENST00000567250 HERC6Q8IVU3 1022 aa13.39□□□□□ -0.27
SF3B3-208ENST00000567250 TMEM161BQ8NDZ6 487 aa13.39□□□□□ -0.27
SF3B3-208ENST00000567250 STAMQ92783 540 aa13.39□□□□□ -0.27
SF3B3-208ENST00000567250 C7orf25Q9BPX7 421 aa13.39□□□□□ -0.27
SF3B3-208ENST00000567250 MRPL4Q9BYD3 311 aaKnown RBP13.39□□□□□ -0.27
SF3B3-208ENST00000567250 TRIM6Q9C030 488 aaPredicted RBP13.39□□□□□ -0.27
SF3B3-208ENST00000567250 ST6GALNAC4Q9H4F1 302 aa13.39□□□□□ -0.27
SF3B3-208ENST00000567250 ELAC1Q9H777 363 aaKnown RBP13.39□□□□□ -0.27
SF3B3-208ENST00000567250 MRPL44Q9H9J2 332 aaKnown RBP13.39□□□□□ -0.27
SF3B3-208ENST00000567250 POLD4Q9HCU8 107 aa13.39□□□□□ -0.27
SF3B3-208ENST00000567250 TMEM161AQ9NX61 479 aa13.39□□□□□ -0.27
SF3B3-208ENST00000567250 FNDC1Q4ZHG4 1894 aaPredicted RBP13.39□□□□□ -0.27
SF3B3-208ENST00000567250 TRIOBPQ9H2D6 2365 aa13.39□□□□□ -0.27
SF3B3-208ENST00000567250 A0A0U1RQF3 1178 aa13.38□□□□□ -0.27
SF3B3-208ENST00000567250 PVALEFA0A1B0GWK0 134 aa13.38□□□□□ -0.27
SF3B3-208ENST00000567250 C9IYK1 514 aa13.38□□□□□ -0.27
SF3B3-208ENST00000567250 GTPBP6O43824 516 aaPredicted RBP13.38□□□□□ -0.27
SF3B3-208ENST00000567250 MGEA5O60502 916 aa13.38□□□□□ -0.27
SF3B3-208ENST00000567250 COASYQ13057 564 aa13.38□□□□□ -0.27
SF3B3-208ENST00000567250 DCAF4L1Q3SXM0 396 aa13.38□□□□□ -0.27
SF3B3-208ENST00000567250 LONRF3Q496Y0 759 aa13.38□□□□□ -0.27
SF3B3-208ENST00000567250 HERC4Q5GLZ8 1057 aaPredicted RBP13.38□□□□□ -0.27
SF3B3-208ENST00000567250 SLC27A1Q6PCB7 646 aa13.38□□□□□ -0.27
SF3B3-208ENST00000567250 FMR1NBQ8N0W7 255 aaPredicted RBP13.38□□□□□ -0.27
SF3B3-208ENST00000567250 TOP1MTQ969P6 601 aa13.38□□□□□ -0.27
SF3B3-208ENST00000567250 PGBD4Q96DM1 585 aa13.38□□□□□ -0.27
SF3B3-208ENST00000567250 BICD1Q96G01 975 aa13.38□□□□□ -0.27
SF3B3-208ENST00000567250 TIGD1Q96MW7 591 aa13.38□□□□□ -0.27
SF3B3-208ENST00000567250 FAM105AQ9NUU6 356 aa13.38□□□□□ -0.27
SF3B3-208ENST00000567250 MSRAQ9UJ68 235 aa13.38□□□□□ -0.27
SF3B3-208ENST00000567250 PCDHB7Q9Y5E2 793 aa13.38□□□□□ -0.27
SF3B3-208ENST00000567250 TDRD15B5MCY1 1934 aaKnown RBP13.37□□□□□ -0.27
SF3B3-208ENST00000567250 KIAA1671Q9BY89 1806 aa13.37□□□□□ -0.27
SF3B3-208ENST00000567250 A0A1B0GUA9 196 aa13.37□□□□□ -0.27
SF3B3-208ENST00000567250 B4GALT5O43286 388 aa13.37□□□□□ -0.27
SF3B3-208ENST00000567250 TLL1O43897 1013 aa13.37□□□□□ -0.27
SF3B3-208ENST00000567250 UPP2O95045 317 aa13.37□□□□□ -0.27
SF3B3-208ENST00000567250 GCNT3O95395 438 aa13.37□□□□□ -0.27
SF3B3-208ENST00000567250 EOMESO95936 686 aa13.37□□□□□ -0.27
SF3B3-208ENST00000567250 POSTNQ15063 836 aa13.37□□□□□ -0.27
SF3B3-208ENST00000567250 ATF7IP2Q5U623 682 aa13.37□□□□□ -0.27
SF3B3-208ENST00000567250 ECHDC2Q86YB7 292 aa13.37□□□□□ -0.27
SF3B3-208ENST00000567250 ABI1Q8IZP0 508 aa13.37□□□□□ -0.27
SF3B3-208ENST00000567250 PAGE5Q96GU1 130 aa13.37□□□□□ -0.27
SF3B3-208ENST00000567250 CPB2Q96IY4 423 aa13.37□□□□□ -0.27
SF3B3-208ENST00000567250 YME1L1Q96TA2 773 aa13.37□□□□□ -0.27
SF3B3-208ENST00000567250 BLZF1Q9H2G9 400 aa13.37□□□□□ -0.27
SF3B3-208ENST00000567250 EXOC1Q9NV70 894 aa13.37□□□□□ -0.27
SF3B3-208ENST00000567250 EXOC7Q9UPT5 735 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms