RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-222ENST00000566083 DAXXQ9UER7 740 aaPredicted RBP16.62■□□□□ 0.25
CLN3-222ENST00000566083 INPP5FQ9Y2H2 1132 aa16.62■□□□□ 0.25
CLN3-222ENST00000566083 NR2E1Q9Y466 385 aa16.62■□□□□ 0.25
CLN3-222ENST00000566083 ALDH2P05091 517 aa16.61■□□□□ 0.25
CLN3-222ENST00000566083 GALTP07902 379 aa16.61■□□□□ 0.25
CLN3-222ENST00000566083 CTSAP10619 480 aa16.61■□□□□ 0.25
CLN3-222ENST00000566083 EARS2Q5JPH6 523 aaKnown RBP16.61■□□□□ 0.25
CLN3-222ENST00000566083 NOTUMQ6P988 496 aa16.61■□□□□ 0.25
CLN3-222ENST00000566083 IFNLR1Q8IU57 520 aaPredicted RBP16.61■□□□□ 0.25
CLN3-222ENST00000566083 HACE1Q8IYU2 909 aa16.61■□□□□ 0.25
CLN3-222ENST00000566083 ZNF579Q8NAF0 562 aaKnown RBP16.61■□□□□ 0.25
CLN3-222ENST00000566083 LPPQ93052 612 aa16.61■□□□□ 0.25
CLN3-222ENST00000566083 TMEM175Q9BSA9 504 aa16.61■□□□□ 0.25
CLN3-222ENST00000566083 ZBP1Q9H171 429 aa16.61■□□□□ 0.25
CLN3-222ENST00000566083 ADAM7Q9H2U9 754 aa16.61■□□□□ 0.25
CLN3-222ENST00000566083 NRDE2Q9H7Z3 1164 aa16.61■□□□□ 0.25
CLN3-222ENST00000566083 HCFC2Q9Y5Z7 792 aa16.61■□□□□ 0.25
CLN3-222ENST00000566083 TECTAO75443 2155 aa16.6■□□□□ 0.25
CLN3-222ENST00000566083 ZDBF2Q9HCK1 2354 aa16.6■□□□□ 0.25
CLN3-222ENST00000566083 BTBD18B2RXH4 712 aa16.6■□□□□ 0.25
CLN3-222ENST00000566083 NT5C1B-RDH14C9J2C7 533 aa16.6■□□□□ 0.25
CLN3-222ENST00000566083 NCLP19338 710 aaKnown RBP16.6■□□□□ 0.25
CLN3-222ENST00000566083 HOXA11P31270 313 aaPredicted RBP16.6■□□□□ 0.25
CLN3-222ENST00000566083 CA8P35219 290 aa16.6■□□□□ 0.25
CLN3-222ENST00000566083 MTHFRP42898 656 aa16.6■□□□□ 0.25
CLN3-222ENST00000566083 PTENP60484 403 aa16.6■□□□□ 0.25
CLN3-222ENST00000566083 ORC2Q13416 577 aaPredicted RBP16.6■□□□□ 0.25
CLN3-222ENST00000566083 LLGL2Q6P1M3 1020 aa16.6■□□□□ 0.25
CLN3-222ENST00000566083 SYCE2Q6PIF2 218 aa16.6■□□□□ 0.25
CLN3-222ENST00000566083 TRIM67Q6ZTA4 783 aa16.6■□□□□ 0.25
CLN3-222ENST00000566083 RIPOR3Q96MK2 946 aa16.6■□□□□ 0.25
CLN3-222ENST00000566083 NFKBIZQ9BYH8 718 aa16.6■□□□□ 0.25
CLN3-222ENST00000566083 SSX2IPQ9Y2D8 614 aa16.6■□□□□ 0.25
CLN3-222ENST00000566083 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP16.59■□□□□ 0.25
CLN3-222ENST00000566083 CLASP2O75122 1294 aaKnown RBP16.59■□□□□ 0.25
CLN3-222ENST00000566083 NR1I2O75469 434 aa16.59■□□□□ 0.25
CLN3-222ENST00000566083 TXKP42681 527 aa16.59■□□□□ 0.25
CLN3-222ENST00000566083 RBM10P98175 930 aaKnown RBP16.59■□□□□ 0.25
CLN3-222ENST00000566083 PRRX2Q99811 253 aa16.59■□□□□ 0.25
CLN3-222ENST00000566083 LLPHQ9BRT6 129 aaKnown RBP16.59■□□□□ 0.25
CLN3-222ENST00000566083 EMILIN2Q9BXX0 1053 aa16.59■□□□□ 0.25
CLN3-222ENST00000566083 FAN1Q9Y2M0 1017 aa16.59■□□□□ 0.25
CLN3-222ENST00000566083 ZNF318Q5VUA4 2279 aa16.58■□□□□ 0.25
CLN3-222ENST00000566083 ITGA4P13612 1032 aa16.58■□□□□ 0.24
CLN3-222ENST00000566083 HOXD11P31277 338 aaPredicted RBP16.58■□□□□ 0.24
CLN3-222ENST00000566083 ZXDAP98168 799 aa16.58■□□□□ 0.24
CLN3-222ENST00000566083 AGMOQ6ZNB7 445 aa16.58■□□□□ 0.24
CLN3-222ENST00000566083 HFE2Q6ZVN8 426 aa16.58■□□□□ 0.24
CLN3-222ENST00000566083 MTMR9Q96QG7 549 aa16.58■□□□□ 0.24
CLN3-222ENST00000566083 GBP3Q9H0R5 595 aa16.58■□□□□ 0.24
CLN3-222ENST00000566083 MINDY3Q9H8M7 445 aa16.58■□□□□ 0.24
CLN3-222ENST00000566083 DPP7Q9UHL4 492 aa16.58■□□□□ 0.24
CLN3-222ENST00000566083 LIMCH1Q9UPQ0 1083 aa16.58■□□□□ 0.24
CLN3-222ENST00000566083 FAM205CA6NFA0 338 aa16.57■□□□□ 0.24
CLN3-222ENST00000566083 INO80B-WBP1J3KQ70 363 aa16.57■□□□□ 0.24
CLN3-222ENST00000566083 INPPL1O15357 1258 aa16.57■□□□□ 0.24
CLN3-222ENST00000566083 LARGE1O95461 756 aa16.57■□□□□ 0.24
CLN3-222ENST00000566083 ARL2P36404 184 aa16.57■□□□□ 0.24
CLN3-222ENST00000566083 RARRES1P49788 294 aa16.57■□□□□ 0.24
CLN3-222ENST00000566083 SIGLEC14Q08ET2 396 aa16.57■□□□□ 0.24
CLN3-222ENST00000566083 LONRF3Q496Y0 759 aa16.57■□□□□ 0.24
CLN3-222ENST00000566083 ATAT1Q5SQI0 421 aa16.57■□□□□ 0.24
CLN3-222ENST00000566083 ELMSAN1Q6PJG2 1045 aa16.57■□□□□ 0.24
CLN3-222ENST00000566083 SUGP1Q8IWZ8 645 aaKnown RBP16.57■□□□□ 0.24
CLN3-222ENST00000566083 MCPH1Q8NEM0 835 aa16.57■□□□□ 0.24
CLN3-222ENST00000566083 ERMNQ8TAM6 284 aa16.57■□□□□ 0.24
CLN3-222ENST00000566083 TRIM6Q9C030 488 aaPredicted RBP16.57■□□□□ 0.24
CLN3-222ENST00000566083 CSRNP2Q9H175 543 aa16.57■□□□□ 0.24
CLN3-222ENST00000566083 TUFT1Q9NNX1 390 aa16.57■□□□□ 0.24
CLN3-222ENST00000566083 XPNPEP1Q9NQW7 623 aa16.57■□□□□ 0.24
CLN3-222ENST00000566083 BMP2KQ9NSY1 1161 aaPredicted RBP16.57■□□□□ 0.24
CLN3-222ENST00000566083 TMEM221A6NGB7 291 aa16.56■□□□□ 0.24
CLN3-222ENST00000566083 MEIS3P2A8K0S8 358 aa16.56■□□□□ 0.24
CLN3-222ENST00000566083 M0R296 226 aa16.56■□□□□ 0.24
CLN3-222ENST00000566083 ZBTB39O15060 712 aa16.56■□□□□ 0.24
CLN3-222ENST00000566083 TSPAN1O60635 241 aa16.56■□□□□ 0.24
CLN3-222ENST00000566083 SLC11A1P49279 550 aa16.56■□□□□ 0.24
CLN3-222ENST00000566083 HMGN5P82970 282 aaKnown RBP16.56■□□□□ 0.24
CLN3-222ENST00000566083 UBXN11Q5T124 520 aa16.56■□□□□ 0.24
CLN3-222ENST00000566083 ZBTB33Q86T24 672 aa16.56■□□□□ 0.24
CLN3-222ENST00000566083 PBXIP1Q96AQ6 731 aa16.56■□□□□ 0.24
CLN3-222ENST00000566083 ZSCAN31Q96LW9 406 aaPredicted RBP16.56■□□□□ 0.24
CLN3-222ENST00000566083 NACC1Q96RE7 527 aa16.56■□□□□ 0.24
CLN3-222ENST00000566083 FOXP1Q9H334 677 aaPredicted RBP16.56■□□□□ 0.24
CLN3-222ENST00000566083 MRPL17Q9NRX2 175 aaKnown RBP16.56■□□□□ 0.24
CLN3-222ENST00000566083 GIT1Q9Y2X7 761 aa16.56■□□□□ 0.24
CLN3-222ENST00000566083 JAK2O60674 1132 aa16.55■□□□□ 0.24
CLN3-222ENST00000566083 MUTP22033 750 aa16.55■□□□□ 0.24
CLN3-222ENST00000566083 PTPN21Q16825 1174 aa16.55■□□□□ 0.24
CLN3-222ENST00000566083 CABP7Q86V35 215 aa16.55■□□□□ 0.24
CLN3-222ENST00000566083 TMEM173Q86WV6 379 aaPredicted RBP16.55■□□□□ 0.24
CLN3-222ENST00000566083 ZNF280BQ86YH2 543 aa16.55■□□□□ 0.24
CLN3-222ENST00000566083 PLCD3Q8N3E9 789 aa16.55■□□□□ 0.24
CLN3-222ENST00000566083 C8orf76Q96K31 380 aa16.55■□□□□ 0.24
CLN3-222ENST00000566083 PRIMPOLQ96LW4 560 aa16.55■□□□□ 0.24
CLN3-222ENST00000566083 DNAJB4Q9UDY4 337 aa16.55■□□□□ 0.24
CLN3-222ENST00000566083 DBR1Q9UK59 544 aaKnown RBP16.55■□□□□ 0.24
CLN3-222ENST00000566083 USTQ9Y2C2 406 aa16.55■□□□□ 0.24
CLN3-222ENST00000566083 IPPQ9Y573 584 aa16.55■□□□□ 0.24
CLN3-222ENST00000566083 ZMYM2Q9UBW7 1377 aa16.55■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms