RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 RASSF8Q8NHQ8 419 aa14.8□□□□□ -0.04
CLK3-213ENST00000563842 URGCPQ8TCY9 931 aa14.8□□□□□ -0.04
CLK3-213ENST00000563842 ATXN2LQ8WWM7 1075 aaKnown RBP14.8□□□□□ -0.04
CLK3-213ENST00000563842 PPP2R3CQ969Q6 453 aa14.8□□□□□ -0.04
CLK3-213ENST00000563842 FAM122AQ96E09 287 aa14.8□□□□□ -0.04
CLK3-213ENST00000563842 ZNF396Q96N95 335 aaPredicted RBP14.8□□□□□ -0.04
CLK3-213ENST00000563842 PNMA5Q96PV4 448 aa14.8□□□□□ -0.04
CLK3-213ENST00000563842 CSRNP2Q9H175 543 aa14.8□□□□□ -0.04
CLK3-213ENST00000563842 CWH43Q9H720 699 aa14.8□□□□□ -0.04
CLK3-213ENST00000563842 RNF19AQ9NV58 838 aa14.8□□□□□ -0.04
CLK3-213ENST00000563842 KANSL3Q9P2N6 904 aa14.8□□□□□ -0.04
CLK3-213ENST00000563842 CLIC4Q9Y696 253 aa14.8□□□□□ -0.04
CLK3-213ENST00000563842 MORC2Q9Y6X9 1032 aaPredicted RBP14.8□□□□□ -0.04
CLK3-213ENST00000563842 SSBP05455 408 aaKnown RBP eCLIP14.79□□□□□ -0.04
CLK3-213ENST00000563842 ITGA4P13612 1032 aa14.79□□□□□ -0.04
CLK3-213ENST00000563842 ARF4P18085 180 aaPredicted RBP14.79□□□□□ -0.04
CLK3-213ENST00000563842 NCLP19338 710 aaKnown RBP14.79□□□□□ -0.04
CLK3-213ENST00000563842 GUCY2CP25092 1073 aa14.79□□□□□ -0.04
CLK3-213ENST00000563842 TXLNAP40222 546 aa14.79□□□□□ -0.04
CLK3-213ENST00000563842 DMP1Q13316 513 aaPredicted RBP14.79□□□□□ -0.04
CLK3-213ENST00000563842 PTPAQ15257 358 aa14.79□□□□□ -0.04
CLK3-213ENST00000563842 AMHR2Q16671 573 aa14.79□□□□□ -0.04
CLK3-213ENST00000563842 TMEM132AQ24JP5 1023 aa14.79□□□□□ -0.04
CLK3-213ENST00000563842 TMEM119Q4V9L6 283 aa14.79□□□□□ -0.04
CLK3-213ENST00000563842 NOMO2Q5JPE7 1267 aa14.79□□□□□ -0.04
CLK3-213ENST00000563842 SLC27A1Q6PCB7 646 aa14.79□□□□□ -0.04
CLK3-213ENST00000563842 C1orf186Q6ZWK4 172 aa14.79□□□□□ -0.04
CLK3-213ENST00000563842 THNSL1Q8IYQ7 743 aa14.79□□□□□ -0.04
CLK3-213ENST00000563842 ZNF558Q96NG5 402 aa14.79□□□□□ -0.04
CLK3-213ENST00000563842 CCSER1Q9C0I3 900 aa14.79□□□□□ -0.04
CLK3-213ENST00000563842 FZD8Q9H461 694 aa14.79□□□□□ -0.04
CLK3-213ENST00000563842 NSUN3Q9H649 340 aaKnown RBP14.79□□□□□ -0.04
CLK3-213ENST00000563842 RSAD1Q9HA92 442 aa14.79□□□□□ -0.04
CLK3-213ENST00000563842 CCDC39Q9UFE4 941 aa14.79□□□□□ -0.04
CLK3-213ENST00000563842 PUF60Q9UHX1 559 aaKnown RBP14.79□□□□□ -0.04
CLK3-213ENST00000563842 SRPRBQ9Y5M8 271 aaKnown RBP14.79□□□□□ -0.04
CLK3-213ENST00000563842 TRIP11Q15643 1979 aa14.78□□□□□ -0.04
CLK3-213ENST00000563842 SPTBN5Q9NRC6 3674 aaKnown RBP14.78□□□□□ -0.04
CLK3-213ENST00000563842 PRUNE2Q8WUY3 3088 aa14.78□□□□□ -0.04
CLK3-213ENST00000563842 A0A1B0GUA9 196 aa14.78□□□□□ -0.04
CLK3-213ENST00000563842 K7ERI5 159 aa14.78□□□□□ -0.04
CLK3-213ENST00000563842 N4BP3O15049 544 aa14.78□□□□□ -0.04
CLK3-213ENST00000563842 GRM6O15303 877 aa14.78□□□□□ -0.04
CLK3-213ENST00000563842 NCK2O43639 380 aa14.78□□□□□ -0.04
CLK3-213ENST00000563842 HIP1RO75146 1068 aa14.78□□□□□ -0.04
CLK3-213ENST00000563842 ITGB1P05556 798 aa14.78□□□□□ -0.04
CLK3-213ENST00000563842 PRKCBP05771 671 aa14.78□□□□□ -0.04
CLK3-213ENST00000563842 PLA2G4BP0C869 781 aa14.78□□□□□ -0.04
CLK3-213ENST00000563842 ALDH7A1P49419 539 aaKnown RBP14.78□□□□□ -0.04
CLK3-213ENST00000563842 MRPS5P82675 430 aaKnown RBP14.78□□□□□ -0.04
CLK3-213ENST00000563842 KRT17Q04695 432 aa14.78□□□□□ -0.04
CLK3-213ENST00000563842 RNASELQ05823 741 aaKnown RBP14.78□□□□□ -0.04
CLK3-213ENST00000563842 PRPF4BQ13523 1007 aaKnown RBP14.78□□□□□ -0.04
CLK3-213ENST00000563842 SLC39A14Q15043 492 aa14.78□□□□□ -0.04
CLK3-213ENST00000563842 UBXN11Q5T124 520 aa14.78□□□□□ -0.04
CLK3-213ENST00000563842 PDE12Q6L8Q7 609 aaKnown RBP14.78□□□□□ -0.04
CLK3-213ENST00000563842 KCNT2Q6UVM3 1135 aa14.78□□□□□ -0.04
CLK3-213ENST00000563842 KCNK18Q7Z418 384 aa14.78□□□□□ -0.04
CLK3-213ENST00000563842 APBB1IPQ7Z5R6 666 aaPredicted RBP14.78□□□□□ -0.04
CLK3-213ENST00000563842 SPPL3Q8TCT6 385 aa14.78□□□□□ -0.04
CLK3-213ENST00000563842 POF1BQ8WVV4 589 aa14.78□□□□□ -0.04
CLK3-213ENST00000563842 LPPQ93052 612 aa14.78□□□□□ -0.04
CLK3-213ENST00000563842 HLA-CQ95604 372 aa14.78□□□□□ -0.04
CLK3-213ENST00000563842 CPB2Q96IY4 423 aa14.78□□□□□ -0.04
CLK3-213ENST00000563842 PLIN2Q99541 437 aa14.78□□□□□ -0.04
CLK3-213ENST00000563842 ADPGKQ9BRR6 497 aa14.78□□□□□ -0.04
CLK3-213ENST00000563842 ALG13Q9NP73 1137 aaKnown RBP14.78□□□□□ -0.04
CLK3-213ENST00000563842 LZTS1Q9Y250 596 aa14.78□□□□□ -0.04
CLK3-213ENST00000563842 RBM19Q9Y4C8 960 aaKnown RBP14.78□□□□□ -0.04
CLK3-213ENST00000563842 CITO14578 2027 aa14.77□□□□□ -0.04
CLK3-213ENST00000563842 CCDC169A6NNP5 214 aa14.77□□□□□ -0.05
CLK3-213ENST00000563842 ACKR2O00590 384 aa14.77□□□□□ -0.05
CLK3-213ENST00000563842 OFD1O75665 1012 aa14.77□□□□□ -0.05
CLK3-213ENST00000563842 FGF18O76093 207 aa14.77□□□□□ -0.05
CLK3-213ENST00000563842 MARCKSP29966 332 aaPredicted RBP14.77□□□□□ -0.05
CLK3-213ENST00000563842 SMTNP53814 917 aa14.77□□□□□ -0.05
CLK3-213ENST00000563842 SLC12A3P55017 1021 aa14.77□□□□□ -0.05
CLK3-213ENST00000563842 PEX3P56589 373 aa14.77□□□□□ -0.05
CLK3-213ENST00000563842 PLCB3Q01970 1234 aa14.77□□□□□ -0.05
CLK3-213ENST00000563842 CEBPZQ03701 1054 aaKnown RBP14.77□□□□□ -0.05
CLK3-213ENST00000563842 STK38Q15208 465 aa14.77□□□□□ -0.05
CLK3-213ENST00000563842 FAM173BQ6P4H8 233 aa14.77□□□□□ -0.05
CLK3-213ENST00000563842 LRRC55Q6ZSA7 311 aa14.77□□□□□ -0.05
CLK3-213ENST00000563842 BSNDQ8WZ55 320 aa14.77□□□□□ -0.05
CLK3-213ENST00000563842 SYMPKQ92797 1274 aaKnown RBP14.77□□□□□ -0.05
CLK3-213ENST00000563842 FAM193BQ96PV7 902 aaPredicted RBP14.77□□□□□ -0.05
CLK3-213ENST00000563842 USP28Q96RU2 1077 aa14.77□□□□□ -0.05
CLK3-213ENST00000563842 RUSC1Q9BVN2 902 aa14.77□□□□□ -0.05
CLK3-213ENST00000563842 SPG21Q9NZD8 308 aa14.77□□□□□ -0.05
CLK3-213ENST00000563842 INPP5FQ9Y2H2 1132 aa14.77□□□□□ -0.05
CLK3-213ENST00000563842 GIT1Q9Y2X7 761 aa14.77□□□□□ -0.05
CLK3-213ENST00000563842 IPPQ9Y573 584 aa14.77□□□□□ -0.05
CLK3-213ENST00000563842 EYSQ5T1H1 3165 aa14.77□□□□□ -0.05
CLK3-213ENST00000563842 TTC28Q96AY4 2481 aa14.77□□□□□ -0.05
CLK3-213ENST00000563842 ZMYM2Q9UBW7 1377 aa14.76□□□□□ -0.05
CLK3-213ENST00000563842 H0YCG3 227 aa14.76□□□□□ -0.05
CLK3-213ENST00000563842 B4GALT5O43286 388 aa14.76□□□□□ -0.05
CLK3-213ENST00000563842 ZSCAN22P10073 491 aaPredicted RBP14.76□□□□□ -0.05
CLK3-213ENST00000563842 NASPP49321 788 aaPredicted RBP14.76□□□□□ -0.05
CLK3-213ENST00000563842 BMS1Q14692 1282 aaKnown RBP14.76□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms