RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 HIPK3Q9H422 1215 aa18.23■□□□□ 0.51
VPS4A-202ENST00000562754 CTNND2Q9UQB3 1225 aa18.23■□□□□ 0.51
VPS4A-202ENST00000562754 NOC2LQ9Y3T9 749 aaKnown RBP18.23■□□□□ 0.51
VPS4A-202ENST00000562754 TISP43B9A030 160 aa18.22■□□□□ 0.51
VPS4A-202ENST00000562754 B4GALT5O43286 388 aa18.22■□□□□ 0.51
VPS4A-202ENST00000562754 EIF4BP23588 611 aaKnown RBP18.22■□□□□ 0.51
VPS4A-202ENST00000562754 MAPK6Q16659 721 aa18.22■□□□□ 0.51
VPS4A-202ENST00000562754 FAM187BQ17R55 369 aa18.22■□□□□ 0.51
VPS4A-202ENST00000562754 SLC39A4Q6P5W5 647 aa18.22■□□□□ 0.51
VPS4A-202ENST00000562754 FAM228AQ86W67 206 aa18.22■□□□□ 0.51
VPS4A-202ENST00000562754 PPP1R12CQ9BZL4 782 aa18.22■□□□□ 0.51
VPS4A-202ENST00000562754 WNT8AQ9H1J5 351 aa18.22■□□□□ 0.51
VPS4A-202ENST00000562754 SEMA6BQ9H3T3 888 aa18.22■□□□□ 0.51
VPS4A-202ENST00000562754 TMEM39AQ9NV64 488 aa18.22■□□□□ 0.51
VPS4A-202ENST00000562754 PRMT7Q9NVM4 692 aaPredicted RBP18.22■□□□□ 0.51
VPS4A-202ENST00000562754 CNTNAP2Q9UHC6 1331 aa18.22■□□□□ 0.51
VPS4A-202ENST00000562754 TRIM49BA6NDI0 452 aa18.21■□□□□ 0.51
VPS4A-202ENST00000562754 ACKR2O00590 384 aa18.21■□□□□ 0.51
VPS4A-202ENST00000562754 TGFB1I1O43294 461 aa18.21■□□□□ 0.51
VPS4A-202ENST00000562754 TSPAN1O60635 241 aa18.21■□□□□ 0.51
VPS4A-202ENST00000562754 PIGRP01833 764 aa18.21■□□□□ 0.51
VPS4A-202ENST00000562754 GHRP10912 638 aa18.21■□□□□ 0.51
VPS4A-202ENST00000562754 ABCD1P33897 745 aa18.21■□□□□ 0.51
VPS4A-202ENST00000562754 PPP1R2P41236 205 aa18.21■□□□□ 0.51
VPS4A-202ENST00000562754 PMS1P54277 932 aaKnown RBP18.21■□□□□ 0.51
VPS4A-202ENST00000562754 STRN3Q13033 797 aa18.21■□□□□ 0.51
VPS4A-202ENST00000562754 STIM1Q13586 685 aa18.21■□□□□ 0.51
VPS4A-202ENST00000562754 LPIN1Q14693 890 aa18.21■□□□□ 0.51
VPS4A-202ENST00000562754 KNOP1Q1ED39 458 aaKnown RBP18.21■□□□□ 0.51
VPS4A-202ENST00000562754 ZCWPW2Q504Y3 356 aa18.21■□□□□ 0.51
VPS4A-202ENST00000562754 NELFBQ8WX92 580 aa18.21■□□□□ 0.51
VPS4A-202ENST00000562754 P2RX5Q93086 422 aa18.21■□□□□ 0.51
VPS4A-202ENST00000562754 DHTKD1Q96HY7 919 aaPredicted RBP18.21■□□□□ 0.51
VPS4A-202ENST00000562754 TARS2Q9BW92 718 aaKnown RBP18.21■□□□□ 0.51
VPS4A-202ENST00000562754 AGO3Q9H9G7 860 aaKnown RBP18.21■□□□□ 0.51
VPS4A-202ENST00000562754 TRIM43BA6NCK2 446 aa18.2■□□□□ 0.5
VPS4A-202ENST00000562754 ANKRD63C9JTQ0 380 aa18.2■□□□□ 0.5
VPS4A-202ENST00000562754 PSMA7O14818 248 aa18.2■□□□□ 0.5
VPS4A-202ENST00000562754 KIAA0355O15063 1070 aa18.2■□□□□ 0.5
VPS4A-202ENST00000562754 KIF20AO95235 890 aa18.2■□□□□ 0.5
VPS4A-202ENST00000562754 SFPQP23246 707 aaKnown RBP eCLIP18.2■□□□□ 0.5
VPS4A-202ENST00000562754 CCNE1P24864 410 aa18.2■□□□□ 0.5
VPS4A-202ENST00000562754 CYP2C18P33260 490 aa18.2■□□□□ 0.5
VPS4A-202ENST00000562754 STX17P56962 302 aa18.2■□□□□ 0.5
VPS4A-202ENST00000562754 PAK1Q13153 545 aa18.2■□□□□ 0.5
VPS4A-202ENST00000562754 GPNMBQ14956 572 aa18.2■□□□□ 0.5
VPS4A-202ENST00000562754 CENPPQ6IPU0 288 aa18.2■□□□□ 0.5
VPS4A-202ENST00000562754 CATSPER4Q7RTX7 472 aa18.2■□□□□ 0.5
VPS4A-202ENST00000562754 TRIM43Q96BQ3 446 aaPredicted RBP18.2■□□□□ 0.5
VPS4A-202ENST00000562754 PRIMPOLQ96LW4 560 aa18.2■□□□□ 0.5
VPS4A-202ENST00000562754 MRPL4Q9BYD3 311 aaKnown RBP18.2■□□□□ 0.5
VPS4A-202ENST00000562754 TSPY26PQ9H489 355 aa18.2■□□□□ 0.5
VPS4A-202ENST00000562754 TMEM206Q9H813 350 aa18.2■□□□□ 0.5
VPS4A-202ENST00000562754 ERVK-5Q9HDB9 667 aa18.2■□□□□ 0.5
VPS4A-202ENST00000562754 PCDH10Q9P2E7 1040 aa18.2■□□□□ 0.5
VPS4A-202ENST00000562754 DACH1Q9UI36 760 aa18.2■□□□□ 0.5
VPS4A-202ENST00000562754 EXOC7Q9UPT5 735 aa18.2■□□□□ 0.5
VPS4A-202ENST00000562754 LTBP2Q14767 1821 aa18.19■□□□□ 0.5
VPS4A-202ENST00000562754 TET1Q8NFU7 2136 aa18.19■□□□□ 0.5
VPS4A-202ENST00000562754 HNRNPDLO14979 420 aaKnown RBP18.19■□□□□ 0.5
VPS4A-202ENST00000562754 RPS6KA5O75582 802 aa18.19■□□□□ 0.5
VPS4A-202ENST00000562754 ARF4P18085 180 aaPredicted RBP18.19■□□□□ 0.5
VPS4A-202ENST00000562754 ITGB8P26012 769 aa18.19■□□□□ 0.5
VPS4A-202ENST00000562754 CD52P31358 61 aa18.19■□□□□ 0.5
VPS4A-202ENST00000562754 CCL23P55773 120 aa18.19■□□□□ 0.5
VPS4A-202ENST00000562754 PRPF4BQ13523 1007 aaKnown RBP18.19■□□□□ 0.5
VPS4A-202ENST00000562754 EEF1DP3Q658K8 133 aa18.19■□□□□ 0.5
VPS4A-202ENST00000562754 TTI2Q6NXR4 508 aa18.19■□□□□ 0.5
VPS4A-202ENST00000562754 TSHZ1Q6ZSZ6 1077 aa18.19■□□□□ 0.5
VPS4A-202ENST00000562754 SYCP3Q8IZU3 236 aa18.19■□□□□ 0.5
VPS4A-202ENST00000562754 BICD1Q96G01 975 aa18.19■□□□□ 0.5
VPS4A-202ENST00000562754 SCLYQ96I15 445 aa18.19■□□□□ 0.5
VPS4A-202ENST00000562754 CPB2Q96IY4 423 aa18.19■□□□□ 0.5
VPS4A-202ENST00000562754 ACO2Q99798 780 aaKnown RBP18.19■□□□□ 0.5
VPS4A-202ENST00000562754 GBP3Q9H0R5 595 aa18.19■□□□□ 0.5
VPS4A-202ENST00000562754 PRDM5Q9NQX1 630 aaPredicted RBP18.19■□□□□ 0.5
VPS4A-202ENST00000562754 TYW1Q9NV66 732 aaKnown RBP18.19■□□□□ 0.5
VPS4A-202ENST00000562754 SQORQ9Y6N5 450 aa18.19■□□□□ 0.5
VPS4A-202ENST00000562754 PDXKO00764 312 aa18.18■□□□□ 0.5
VPS4A-202ENST00000562754 ABLIM1O14639 778 aa18.18■□□□□ 0.5
VPS4A-202ENST00000562754 NBNO60934 754 aa18.18■□□□□ 0.5
VPS4A-202ENST00000562754 ERLIN2O94905 339 aa18.18■□□□□ 0.5
VPS4A-202ENST00000562754 ERCC5P28715 1186 aaPredicted RBP18.18■□□□□ 0.5
VPS4A-202ENST00000562754 HOXA11P31270 313 aaPredicted RBP18.18■□□□□ 0.5
VPS4A-202ENST00000562754 LIG4P49917 911 aa18.18■□□□□ 0.5
VPS4A-202ENST00000562754 PCBP1Q15365 356 aaKnown RBP eCLIP18.18■□□□□ 0.5
VPS4A-202ENST00000562754 ANKRD40Q6AI12 368 aa18.18■□□□□ 0.5
VPS4A-202ENST00000562754 ZPBP2Q6X784 338 aa18.18■□□□□ 0.5
VPS4A-202ENST00000562754 HAPLN2Q9GZV7 340 aa18.18■□□□□ 0.5
VPS4A-202ENST00000562754 AGPAT3Q9NRZ7 376 aa18.18■□□□□ 0.5
VPS4A-202ENST00000562754 AGPAT5Q9NUQ2 364 aa18.18■□□□□ 0.5
VPS4A-202ENST00000562754 RWDD2AQ9UIY3 292 aa18.18■□□□□ 0.5
VPS4A-202ENST00000562754 ST3GAL5Q9UNP4 418 aa18.18■□□□□ 0.5
VPS4A-202ENST00000562754 TRAF3IP3Q9Y228 551 aa18.18■□□□□ 0.5
VPS4A-202ENST00000562754 PROZP22891 400 aa18.17■□□□□ 0.5
VPS4A-202ENST00000562754 ADSSP30520 456 aa18.17■□□□□ 0.5
VPS4A-202ENST00000562754 PAK2Q13177 524 aa18.17■□□□□ 0.5
VPS4A-202ENST00000562754 CT47A1Q5JQC4 288 aaPredicted RBP18.17■□□□□ 0.5
VPS4A-202ENST00000562754 ATF7IP2Q5U623 682 aa18.17■□□□□ 0.5
VPS4A-202ENST00000562754 CDR2LQ86X02 465 aaPredicted RBP18.17■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms