RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 DDX25Q9UHL0 483 aaKnown RBP18.41■□□□□ 0.54
CLN3-208ENST00000561505 COL4A3BPQ9Y5P4 624 aa18.41■□□□□ 0.54
CLN3-208ENST00000561505 CFAP54Q96N23 3096 aa18.41■□□□□ 0.54
CLN3-208ENST00000561505 H0Y858 1186 aa18.4■□□□□ 0.54
CLN3-208ENST00000561505 TBX3O15119 743 aa18.4■□□□□ 0.54
CLN3-208ENST00000561505 GFRA3O60609 400 aa18.4■□□□□ 0.54
CLN3-208ENST00000561505 DKC1O60832 514 aaKnown RBP eCLIP18.4■□□□□ 0.54
CLN3-208ENST00000561505 P4HBP07237 508 aaKnown RBP18.4■□□□□ 0.54
CLN3-208ENST00000561505 ASGR2P07307 311 aa18.4■□□□□ 0.54
CLN3-208ENST00000561505 AFF1P51825 1210 aaKnown RBP18.4■□□□□ 0.54
CLN3-208ENST00000561505 NPEPPSP55786 919 aa18.4■□□□□ 0.54
CLN3-208ENST00000561505 PCBP1Q15365 356 aaKnown RBP eCLIP18.4■□□□□ 0.54
CLN3-208ENST00000561505 PLA2G4FQ68DD2 849 aa18.4■□□□□ 0.54
CLN3-208ENST00000561505 ASTLQ6HA08 431 aaPredicted RBP18.4■□□□□ 0.54
CLN3-208ENST00000561505 IFNLR1Q8IU57 520 aaPredicted RBP18.4■□□□□ 0.54
CLN3-208ENST00000561505 HAS1Q92839 578 aa18.4■□□□□ 0.54
CLN3-208ENST00000561505 ATOH1Q92858 354 aaPredicted RBP18.4■□□□□ 0.54
CLN3-208ENST00000561505 PHF20Q9BVI0 1012 aa18.4■□□□□ 0.54
CLN3-208ENST00000561505 SMOC2Q9H3U7 446 aa18.4■□□□□ 0.54
CLN3-208ENST00000561505 SFXN1Q9H9B4 322 aa18.4■□□□□ 0.54
CLN3-208ENST00000561505 TSHZ2Q9NRE2 1034 aa18.4■□□□□ 0.54
CLN3-208ENST00000561505 FAM86C1Q9NVL1 165 aa18.4■□□□□ 0.54
CLN3-208ENST00000561505 ASAP2O43150 1006 aa18.39■□□□□ 0.53
CLN3-208ENST00000561505 GAS2O43903 313 aaKnown RBP18.39■□□□□ 0.53
CLN3-208ENST00000561505 ALDH2P05091 517 aa18.39■□□□□ 0.53
CLN3-208ENST00000561505 CNPP09543 421 aaKnown RBP18.39■□□□□ 0.53
CLN3-208ENST00000561505 GCFC2P16383 781 aaKnown RBP18.39■□□□□ 0.53
CLN3-208ENST00000561505 NCLP19338 710 aaKnown RBP18.39■□□□□ 0.53
CLN3-208ENST00000561505 RFC5P40937 340 aa18.39■□□□□ 0.53
CLN3-208ENST00000561505 POU5F1BQ06416 359 aa18.39■□□□□ 0.53
CLN3-208ENST00000561505 SPIRE1Q08AE8 756 aa18.39■□□□□ 0.53
CLN3-208ENST00000561505 INF2Q27J81 1249 aa18.39■□□□□ 0.53
CLN3-208ENST00000561505 CYP26C1Q6V0L0 522 aa18.39■□□□□ 0.53
CLN3-208ENST00000561505 CABP7Q86V35 215 aa18.39■□□□□ 0.53
CLN3-208ENST00000561505 CNNM3Q8NE01 707 aa18.39■□□□□ 0.53
CLN3-208ENST00000561505 SLC7A3Q8WY07 619 aa18.39■□□□□ 0.53
CLN3-208ENST00000561505 NLRP4Q96MN2 994 aa18.39■□□□□ 0.53
CLN3-208ENST00000561505 AIFM3Q96NN9 605 aa18.39■□□□□ 0.53
CLN3-208ENST00000561505 RSAD1Q9HA92 442 aa18.39■□□□□ 0.53
CLN3-208ENST00000561505 DBR1Q9UK59 544 aaKnown RBP18.39■□□□□ 0.53
CLN3-208ENST00000561505 NRP1O14786 923 aa18.38■□□□□ 0.53
CLN3-208ENST00000561505 RNASELQ05823 741 aaKnown RBP18.38■□□□□ 0.53
CLN3-208ENST00000561505 DSC1Q08554 894 aa18.38■□□□□ 0.53
CLN3-208ENST00000561505 LAMTOR4Q0VGL1 99 aa18.38■□□□□ 0.53
CLN3-208ENST00000561505 EPHA7Q15375 998 aa18.38■□□□□ 0.53
CLN3-208ENST00000561505 LONRF3Q496Y0 759 aa18.38■□□□□ 0.53
CLN3-208ENST00000561505 TMC5Q6UXY8 1006 aa18.38■□□□□ 0.53
CLN3-208ENST00000561505 OTOP3Q7RTS5 596 aa18.38■□□□□ 0.53
CLN3-208ENST00000561505 GPR65Q8IYL9 337 aa18.38■□□□□ 0.53
CLN3-208ENST00000561505 SMG8Q8ND04 991 aaKnown RBP18.38■□□□□ 0.53
CLN3-208ENST00000561505 URGCPQ8TCY9 931 aa18.38■□□□□ 0.53
CLN3-208ENST00000561505 PSPC1Q8WXF1 523 aaKnown RBP18.38■□□□□ 0.53
CLN3-208ENST00000561505 SNX27Q96L92 541 aa18.38■□□□□ 0.53
CLN3-208ENST00000561505 EMILIN2Q9BXX0 1053 aa18.38■□□□□ 0.53
CLN3-208ENST00000561505 RXFP1Q9HBX9 757 aa18.38■□□□□ 0.53
CLN3-208ENST00000561505 UBN1Q9NPG3 1134 aa18.38■□□□□ 0.53
CLN3-208ENST00000561505 INPP5FQ9Y2H2 1132 aa18.38■□□□□ 0.53
CLN3-208ENST00000561505 SOD2P04179 222 aa18.37■□□□□ 0.53
CLN3-208ENST00000561505 NPR3P17342 541 aa18.37■□□□□ 0.53
CLN3-208ENST00000561505 KIAA0319Q5VV43 1072 aa18.37■□□□□ 0.53
CLN3-208ENST00000561505 CWF19L1Q69YN2 538 aaKnown RBP18.37■□□□□ 0.53
CLN3-208ENST00000561505 NEK8Q86SG6 692 aa18.37■□□□□ 0.53
CLN3-208ENST00000561505 FERMT3Q86UX7 667 aa18.37■□□□□ 0.53
CLN3-208ENST00000561505 COLGALT2Q8IYK4 626 aa18.37■□□□□ 0.53
CLN3-208ENST00000561505 CEP170P1Q96L14 293 aa18.37■□□□□ 0.53
CLN3-208ENST00000561505 MARCH5Q9NX47 278 aa18.37■□□□□ 0.53
CLN3-208ENST00000561505 FAN1Q9Y2M0 1017 aa18.37■□□□□ 0.53
CLN3-208ENST00000561505 CYP46A1Q9Y6A2 500 aa18.37■□□□□ 0.53
CLN3-208ENST00000561505 CPLX1O14810 134 aa18.36■□□□□ 0.53
CLN3-208ENST00000561505 LYPLA2O95372 231 aa18.36■□□□□ 0.53
CLN3-208ENST00000561505 AXLP30530 894 aa18.36■□□□□ 0.53
CLN3-208ENST00000561505 TDGQ13569 410 aa18.36■□□□□ 0.53
CLN3-208ENST00000561505 RIF1Q5UIP0 2472 aaKnown RBP18.36■□□□□ 0.53
CLN3-208ENST00000561505 CCDC149Q6ZUS6 474 aa18.36■□□□□ 0.53
CLN3-208ENST00000561505 HDAC7Q8WUI4 952 aa18.36■□□□□ 0.53
CLN3-208ENST00000561505 TCP11Q8WWU5 503 aa18.36■□□□□ 0.53
CLN3-208ENST00000561505 TMEM143Q96AN5 459 aa18.36■□□□□ 0.53
CLN3-208ENST00000561505 ACSF2Q96CM8 615 aaPredicted RBP18.36■□□□□ 0.53
CLN3-208ENST00000561505 CCDC51Q96ER9 411 aa18.36■□□□□ 0.53
CLN3-208ENST00000561505 RPS6KC1Q96S38 1066 aa18.36■□□□□ 0.53
CLN3-208ENST00000561505 HERC2P3Q9BVR0 1158 aa18.36■□□□□ 0.53
CLN3-208ENST00000561505 XPNPEP1Q9NQW7 623 aa18.36■□□□□ 0.53
CLN3-208ENST00000561505 MRPL17Q9NRX2 175 aaKnown RBP18.36■□□□□ 0.53
CLN3-208ENST00000561505 CHST7Q9NS84 486 aa18.36■□□□□ 0.53
CLN3-208ENST00000561505 IGSF9Q9P2J2 1179 aa18.36■□□□□ 0.53
CLN3-208ENST00000561505 DUSP12Q9UNI6 340 aa18.36■□□□□ 0.53
CLN3-208ENST00000561505 STK36Q9NRP7 1315 aa18.35■□□□□ 0.53
CLN3-208ENST00000561505 PRR23AA6NEV1 266 aa18.35■□□□□ 0.53
CLN3-208ENST00000561505 N4BP1O75113 896 aaKnown RBP18.35■□□□□ 0.53
CLN3-208ENST00000561505 AOC1P19801 751 aa18.35■□□□□ 0.53
CLN3-208ENST00000561505 KLRC2P26717 231 aa18.35■□□□□ 0.53
CLN3-208ENST00000561505 YWHABP31946 246 aaKnown RBP18.35■□□□□ 0.53
CLN3-208ENST00000561505 PTENP60484 403 aa18.35■□□□□ 0.53
CLN3-208ENST00000561505 LETM2Q2VYF4 491 aa18.35■□□□□ 0.53
CLN3-208ENST00000561505 CPLX2Q6PUV4 134 aaKnown RBP18.35■□□□□ 0.53
CLN3-208ENST00000561505 OTUD6AQ7L8S5 288 aa18.35■□□□□ 0.53
CLN3-208ENST00000561505 ASCL5Q7RTU5 278 aa18.35■□□□□ 0.53
CLN3-208ENST00000561505 TMEM87AQ8NBN3 555 aa18.35■□□□□ 0.53
CLN3-208ENST00000561505 NAP1L4Q99733 375 aaKnown RBP18.35■□□□□ 0.53
CLN3-208ENST00000561505 GBP3Q9H0R5 595 aa18.35■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms