RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 RWDD2AQ9UIY3 292 aa5.9□□□□□ -1.46
VPS13C-209ENST00000560637 AGAP1Q9UPQ3 857 aa5.9□□□□□ -1.46
VPS13C-209ENST00000560637 SNX9Q9Y5X1 595 aa5.9□□□□□ -1.46
VPS13C-209ENST00000560637 VIRMAQ69YN4 1812 aaKnown RBP5.9□□□□□ -1.46
VPS13C-209ENST00000560637 PVALEFA0A1B0GWK0 134 aa5.9□□□□□ -1.46
VPS13C-209ENST00000560637 B4GALT5O43286 388 aa5.9□□□□□ -1.46
VPS13C-209ENST00000560637 ZSCAN12O43309 604 aa5.9□□□□□ -1.46
VPS13C-209ENST00000560637 THAP12O43422 761 aa5.9□□□□□ -1.46
VPS13C-209ENST00000560637 BCRP11274 1271 aa5.9□□□□□ -1.46
VPS13C-209ENST00000560637 ERCC5P28715 1186 aaPredicted RBP5.9□□□□□ -1.46
VPS13C-209ENST00000560637 PPARDQ03181 441 aa5.9□□□□□ -1.46
VPS13C-209ENST00000560637 PAK2Q13177 524 aa5.9□□□□□ -1.46
VPS13C-209ENST00000560637 SMC1AQ14683 1233 aaKnown RBP5.9□□□□□ -1.46
VPS13C-209ENST00000560637 MAN2A1Q16706 1144 aa5.9□□□□□ -1.46
VPS13C-209ENST00000560637 C2CD6Q53TS8 623 aa5.9□□□□□ -1.46
VPS13C-209ENST00000560637 TCP11X2Q5H9J9 407 aa5.9□□□□□ -1.46
VPS13C-209ENST00000560637 SH3D19Q5HYK7 790 aa5.9□□□□□ -1.46
VPS13C-209ENST00000560637 IQSEC1Q6DN90 963 aa5.9□□□□□ -1.46
VPS13C-209ENST00000560637 XRRA1Q6P2D8 792 aa5.9□□□□□ -1.46
VPS13C-209ENST00000560637 TMEM270Q6UE05 265 aa5.9□□□□□ -1.46
VPS13C-209ENST00000560637 KIAA0319LQ8IZA0 1049 aa5.9□□□□□ -1.46
VPS13C-209ENST00000560637 PCSK9Q8NBP7 692 aaKnown RBP5.9□□□□□ -1.46
VPS13C-209ENST00000560637 CCDC112Q8NEF3 446 aa5.9□□□□□ -1.46
VPS13C-209ENST00000560637 GOLGA5Q8TBA6 731 aa5.9□□□□□ -1.46
VPS13C-209ENST00000560637 ENOX1Q8TC92 643 aaKnown RBP5.9□□□□□ -1.46
VPS13C-209ENST00000560637 TNFRSF25Q93038 417 aa5.9□□□□□ -1.46
VPS13C-209ENST00000560637 TRMT13Q9NUP7 481 aaKnown RBP5.9□□□□□ -1.46
VPS13C-209ENST00000560637 TYW1Q9NV66 732 aaKnown RBP5.9□□□□□ -1.46
VPS13C-209ENST00000560637 ADAMTS1Q9UHI8 967 aa5.9□□□□□ -1.46
VPS13C-209ENST00000560637 TTLL3Q9Y4R7 772 aa5.9□□□□□ -1.46
VPS13C-209ENST00000560637 ANKRD62A6NC57 917 aa5.9□□□□□ -1.47
VPS13C-209ENST00000560637 CASTOR2A6NHX0 329 aa5.9□□□□□ -1.47
VPS13C-209ENST00000560637 ZC3H11AO75152 810 aaKnown RBP eCLIP5.9□□□□□ -1.473e-6■■■□□ 18.7
VPS13C-209ENST00000560637 WEE2P0C1S8 567 aa5.9□□□□□ -1.47
VPS13C-209ENST00000560637 SPATA31C1P0DKV0 1188 aa5.9□□□□□ -1.47
VPS13C-209ENST00000560637 VAMP7P51809 220 aa5.9□□□□□ -1.47
VPS13C-209ENST00000560637 SNRNP35Q16560 246 aaKnown RBP5.9□□□□□ -1.47
VPS13C-209ENST00000560637 NAALADL2Q58DX5 795 aa5.9□□□□□ -1.47
VPS13C-209ENST00000560637 SYT10Q6XYQ8 523 aa5.9□□□□□ -1.47
VPS13C-209ENST00000560637 KNL1Q8NG31 2342 aa5.9□□□□□ -1.47
VPS13C-209ENST00000560637 TRIB2Q92519 343 aa5.9□□□□□ -1.47
VPS13C-209ENST00000560637 LPPQ93052 612 aa5.9□□□□□ -1.47
VPS13C-209ENST00000560637 SCLYQ96I15 445 aa5.9□□□□□ -1.47
VPS13C-209ENST00000560637 HEXIM2Q96MH2 286 aaKnown RBP5.9□□□□□ -1.47
VPS13C-209ENST00000560637 POLR3CQ9BUI4 534 aaPredicted RBP5.9□□□□□ -1.47
VPS13C-209ENST00000560637 TRPV6Q9H1D0 765 aa5.9□□□□□ -1.47
VPS13C-209ENST00000560637 METTL14Q9HCE5 456 aaKnown RBP5.9□□□□□ -1.47
VPS13C-209ENST00000560637 WRAP73Q9P2S5 460 aaPredicted RBP5.9□□□□□ -1.47
VPS13C-209ENST00000560637 SRRDQ9UH36 339 aa5.9□□□□□ -1.47
VPS13C-209ENST00000560637 COL4A5P29400 1685 aa5.9□□□□□ -1.47
VPS13C-209ENST00000560637 SPATA31C2B4DYI2 1134 aa5.89□□□□□ -1.47
VPS13C-209ENST00000560637 PIK3CDO00329 1044 aa5.89□□□□□ -1.47
VPS13C-209ENST00000560637 SPOPO43791 374 aa5.89□□□□□ -1.47
VPS13C-209ENST00000560637 HMGCRP04035 888 aa5.89□□□□□ -1.47
VPS13C-209ENST00000560637 CCDC172P0C7W6 258 aa5.89□□□□□ -1.47
VPS13C-209ENST00000560637 SMIM10L2AP0DMW4 78 aa5.89□□□□□ -1.47
VPS13C-209ENST00000560637 SMIM10L2BP0DMW5 78 aa5.89□□□□□ -1.47
VPS13C-209ENST00000560637 CXCL8P10145 99 aa5.89□□□□□ -1.47
VPS13C-209ENST00000560637 DESP17661 470 aa5.89□□□□□ -1.47
VPS13C-209ENST00000560637 SLC9A1P19634 815 aa5.89□□□□□ -1.47
VPS13C-209ENST00000560637 KCNJ6P48051 423 aa5.89□□□□□ -1.47
VPS13C-209ENST00000560637 SLC8A3P57103 927 aa5.89□□□□□ -1.47
VPS13C-209ENST00000560637 PPP2R3AQ06190 1150 aa5.89□□□□□ -1.47
VPS13C-209ENST00000560637 MXD4Q14582 209 aaPredicted RBP5.89□□□□□ -1.47
VPS13C-209ENST00000560637 ZNF699Q32M78 642 aa5.89□□□□□ -1.47
VPS13C-209ENST00000560637 DUSP28Q4G0W2 176 aa5.89□□□□□ -1.47
VPS13C-209ENST00000560637 CCDC70Q6NSX1 233 aa5.89□□□□□ -1.47
VPS13C-209ENST00000560637 GUF1Q8N442 669 aaKnown RBP5.89□□□□□ -1.47
VPS13C-209ENST00000560637 ASAP3Q8TDY4 903 aa5.89□□□□□ -1.47
VPS13C-209ENST00000560637 ACAP3Q96P50 834 aa5.89□□□□□ -1.47
VPS13C-209ENST00000560637 MTG1Q9BT17 334 aaPredicted RBP5.89□□□□□ -1.47
VPS13C-209ENST00000560637 CENPHQ9H3R5 247 aa5.89□□□□□ -1.47
VPS13C-209ENST00000560637 PLIN4Q96Q06 1357 aa5.89□□□□□ -1.47
VPS13C-209ENST00000560637 IGLV3-22A0A075B6J6 115 aa5.89□□□□□ -1.47
VPS13C-209ENST00000560637 MAGEB2O15479 319 aa5.89□□□□□ -1.47
VPS13C-209ENST00000560637 B3GAT3O94766 335 aa5.89□□□□□ -1.47
VPS13C-209ENST00000560637 CCDC175P0C221 793 aa5.89□□□□□ -1.47
VPS13C-209ENST00000560637 KCNA2P16389 499 aa5.89□□□□□ -1.47
VPS13C-209ENST00000560637 ADORA2BP29275 332 aa5.89□□□□□ -1.47
VPS13C-209ENST00000560637 GPC3P51654 580 aa5.89□□□□□ -1.47
VPS13C-209ENST00000560637 FAM193AP78312 1265 aa5.89□□□□□ -1.47
VPS13C-209ENST00000560637 ZNF667Q5HYK9 610 aa5.89□□□□□ -1.47
VPS13C-209ENST00000560637 SPOPLQ6IQ16 392 aa5.89□□□□□ -1.47
VPS13C-209ENST00000560637 OTOP2Q7RTS6 562 aa5.89□□□□□ -1.47
VPS13C-209ENST00000560637 C4orf19Q8IY42 314 aa5.89□□□□□ -1.47
VPS13C-209ENST00000560637 ADSSL1Q8N142 457 aa5.89□□□□□ -1.47
VPS13C-209ENST00000560637 KIAA0895Q8NCT3 520 aa5.89□□□□□ -1.47
VPS13C-209ENST00000560637 ACRBPQ8NEB7 543 aa5.89□□□□□ -1.47
VPS13C-209ENST00000560637 OR8K1Q8NGG5 319 aa5.89□□□□□ -1.47
VPS13C-209ENST00000560637 SCFD1Q8WVM8 642 aa5.89□□□□□ -1.47
VPS13C-209ENST00000560637 GPR20Q99678 358 aa5.89□□□□□ -1.47
VPS13C-209ENST00000560637 C7orf25Q9BPX7 421 aa5.89□□□□□ -1.47
VPS13C-209ENST00000560637 UNC93B1Q9H1C4 597 aa5.89□□□□□ -1.47
VPS13C-209ENST00000560637 SNX25Q9H3E2 840 aa5.89□□□□□ -1.47
VPS13C-209ENST00000560637 FAM49BQ9NUQ9 324 aa5.89□□□□□ -1.47
VPS13C-209ENST00000560637 SNTG2Q9NY99 539 aa5.89□□□□□ -1.47
VPS13C-209ENST00000560637 KCNG1Q9UIX4 513 aa5.89□□□□□ -1.47
VPS13C-209ENST00000560637 TBX20Q9UMR3 447 aa5.89□□□□□ -1.47
VPS13C-209ENST00000560637 MAGED2Q9UNF1 606 aaPredicted RBP5.89□□□□□ -1.47
VPS13C-209ENST00000560637 HPSEQ9Y251 543 aa5.89□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 213.7 ms