RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 PP2D1A8MPX8 630 aa13.05□□□□□ -0.32
LDLR-212ENST00000560467 BACH1O14867 736 aa13.05□□□□□ -0.32
LDLR-212ENST00000560467 SSBP05455 408 aaKnown RBP eCLIP13.05□□□□□ -0.32
LDLR-212ENST00000560467 KRT18P05783 430 aaKnown RBP13.05□□□□□ -0.32
LDLR-212ENST00000560467 PLCG1P19174 1290 aa13.05□□□□□ -0.32
LDLR-212ENST00000560467 QARSP47897 775 aaKnown RBP13.05□□□□□ -0.32
LDLR-212ENST00000560467 SARSP49591 514 aaKnown RBP13.05□□□□□ -0.32
LDLR-212ENST00000560467 STAT5BP51692 787 aa13.05□□□□□ -0.32
LDLR-212ENST00000560467 ZXDAP98168 799 aa13.05□□□□□ -0.32
LDLR-212ENST00000560467 NFX1Q12986 1120 aaKnown RBP13.05□□□□□ -0.32
LDLR-212ENST00000560467 CBX2Q14781 532 aaPredicted RBP13.05□□□□□ -0.32
LDLR-212ENST00000560467 FAM160B1Q5W0V3 765 aa13.05□□□□□ -0.32
LDLR-212ENST00000560467 MTHFD1LQ6UB35 978 aa13.05□□□□□ -0.32
LDLR-212ENST00000560467 USP49Q70CQ1 688 aa13.05□□□□□ -0.32
LDLR-212ENST00000560467 OTUD6AQ7L8S5 288 aa13.05□□□□□ -0.32
LDLR-212ENST00000560467 TMEM40Q8WWA1 233 aa13.05□□□□□ -0.32
LDLR-212ENST00000560467 SMARCE1Q969G3 411 aa13.05□□□□□ -0.32
LDLR-212ENST00000560467 PBXIP1Q96AQ6 731 aa13.05□□□□□ -0.32
LDLR-212ENST00000560467 RPGRIP1Q96KN7 1286 aa13.05□□□□□ -0.32
LDLR-212ENST00000560467 PLIN2Q99541 437 aa13.05□□□□□ -0.32
LDLR-212ENST00000560467 NAT10Q9H0A0 1025 aaKnown RBP13.05□□□□□ -0.32
LDLR-212ENST00000560467 UNC45AQ9H3U1 944 aa13.05□□□□□ -0.32
LDLR-212ENST00000560467 TLE6Q9H808 572 aa13.05□□□□□ -0.32
LDLR-212ENST00000560467 CDHR5Q9HBB8 845 aa13.05□□□□□ -0.32
LDLR-212ENST00000560467 ERVK-5Q9HDB9 667 aa13.05□□□□□ -0.32
LDLR-212ENST00000560467 TMEM63CQ9P1W3 806 aa13.05□□□□□ -0.32
LDLR-212ENST00000560467 NOC2LQ9Y3T9 749 aaKnown RBP13.05□□□□□ -0.32
LDLR-212ENST00000560467 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.04□□□□□ -0.32
LDLR-212ENST00000560467 SMIM35A0A1B0GVV1 85 aa13.04□□□□□ -0.32
LDLR-212ENST00000560467 TBKBP1A7MCY6 615 aa13.04□□□□□ -0.32
LDLR-212ENST00000560467 CAVIN2O95810 425 aa13.04□□□□□ -0.32
LDLR-212ENST00000560467 CCNE2O96020 404 aa13.04□□□□□ -0.32
LDLR-212ENST00000560467 XRCC6P12956 609 aaKnown RBP eCLIP13.04□□□□□ -0.32
LDLR-212ENST00000560467 AFMP43652 599 aa13.04□□□□□ -0.32
LDLR-212ENST00000560467 PSMC5P62195 406 aa13.04□□□□□ -0.32
LDLR-212ENST00000560467 POSTNQ15063 836 aa13.04□□□□□ -0.32
LDLR-212ENST00000560467 SPOUT1Q5T280 376 aaKnown RBP13.04□□□□□ -0.32
LDLR-212ENST00000560467 FAM102BQ5T8I3 360 aa13.04□□□□□ -0.32
LDLR-212ENST00000560467 PLPPR4Q7Z2D5 763 aa13.04□□□□□ -0.32
LDLR-212ENST00000560467 BMP8AQ7Z5Y6 402 aa13.04□□□□□ -0.32
LDLR-212ENST00000560467 CKAP2LQ8IYA6 745 aa13.04□□□□□ -0.32
LDLR-212ENST00000560467 MICAL1Q8TDZ2 1067 aa13.04□□□□□ -0.32
LDLR-212ENST00000560467 PAGE5Q96GU1 130 aa13.04□□□□□ -0.32
LDLR-212ENST00000560467 PPP1R16BQ96T49 567 aa13.04□□□□□ -0.32
LDLR-212ENST00000560467 PHF7Q9BWX1 381 aaPredicted RBP13.04□□□□□ -0.32
LDLR-212ENST00000560467 SYCE3A1L190 88 aa13.03□□□□□ -0.32
LDLR-212ENST00000560467 DHX15O43143 795 aaKnown RBP13.03□□□□□ -0.32
LDLR-212ENST00000560467 FGF18O76093 207 aa13.03□□□□□ -0.32
LDLR-212ENST00000560467 KLRC1P26715 233 aa13.03□□□□□ -0.32
LDLR-212ENST00000560467 ERVFC1P60507 584 aa13.03□□□□□ -0.32
LDLR-212ENST00000560467 CYP4A11Q02928 519 aa13.03□□□□□ -0.32
LDLR-212ENST00000560467 TCF15Q12870 199 aa13.03□□□□□ -0.32
LDLR-212ENST00000560467 DUSP6Q16828 381 aa13.03□□□□□ -0.32
LDLR-212ENST00000560467 HYIQ5T013 277 aa13.03□□□□□ -0.32
LDLR-212ENST00000560467 CATSPER3Q86XQ3 398 aa13.03□□□□□ -0.32
LDLR-212ENST00000560467 SUGP1Q8IWZ8 645 aaKnown RBP13.03□□□□□ -0.32
LDLR-212ENST00000560467 THNSL1Q8IYQ7 743 aa13.03□□□□□ -0.32
LDLR-212ENST00000560467 KIAA0319LQ8IZA0 1049 aa13.03□□□□□ -0.32
LDLR-212ENST00000560467 ATP8B4Q8TF62 1192 aa13.03□□□□□ -0.32
LDLR-212ENST00000560467 SUSD6Q92537 303 aa13.03□□□□□ -0.32
LDLR-212ENST00000560467 LARP4BQ92615 738 aaKnown RBP13.03□□□□□ -0.32
LDLR-212ENST00000560467 DYDC2Q96IM9 177 aa13.03□□□□□ -0.32
LDLR-212ENST00000560467 ADAM2Q99965 735 aa13.03□□□□□ -0.32
LDLR-212ENST00000560467 HSD17B14Q9BPX1 270 aa13.03□□□□□ -0.32
LDLR-212ENST00000560467 TLR9Q9NR96 1032 aa13.03□□□□□ -0.32
LDLR-212ENST00000560467 NRBP2Q9NSY0 501 aa13.03□□□□□ -0.32
LDLR-212ENST00000560467 KIAA1468Q9P260 1216 aa13.03□□□□□ -0.32
LDLR-212ENST00000560467 DACH1Q9UI36 760 aa13.03□□□□□ -0.32
LDLR-212ENST00000560467 PCDHB7Q9Y5E2 793 aa13.03□□□□□ -0.32
LDLR-212ENST00000560467 PCDHB12Q9Y5F1 795 aa13.03□□□□□ -0.32
LDLR-212ENST00000560467 DENND3A2RUS2 1198 aa13.02□□□□□ -0.33
LDLR-212ENST00000560467 ZBTB42B2RXF5 422 aa13.02□□□□□ -0.33
LDLR-212ENST00000560467 C9IYK1 514 aa13.02□□□□□ -0.33
LDLR-212ENST00000560467 FSCN2O14926 492 aa13.02□□□□□ -0.33
LDLR-212ENST00000560467 ACTN4O43707 911 aaKnown RBP13.02□□□□□ -0.33
LDLR-212ENST00000560467 RPS6KA5O75582 802 aa13.02□□□□□ -0.33
LDLR-212ENST00000560467 SLITRK3O94933 977 aa13.02□□□□□ -0.33
LDLR-212ENST00000560467 PLA2G4BP0C869 781 aa13.02□□□□□ -0.33
LDLR-212ENST00000560467 FGFR1P11362 822 aa13.02□□□□□ -0.33
LDLR-212ENST00000560467 PTPN5P54829 565 aa13.02□□□□□ -0.33
LDLR-212ENST00000560467 VCPP55072 806 aaKnown RBP13.02□□□□□ -0.33
LDLR-212ENST00000560467 UBE3AQ05086 875 aa13.02□□□□□ -0.33
LDLR-212ENST00000560467 SPIRE1Q08AE8 756 aa13.02□□□□□ -0.33
LDLR-212ENST00000560467 CTTNQ14247 550 aaKnown RBP13.02□□□□□ -0.33
LDLR-212ENST00000560467 DHX8Q14562 1220 aaKnown RBP13.02□□□□□ -0.33
LDLR-212ENST00000560467 PLPP4Q5VZY2 271 aa13.02□□□□□ -0.33
LDLR-212ENST00000560467 CCDC60Q8IWA6 550 aaPredicted RBP13.02□□□□□ -0.33
LDLR-212ENST00000560467 NME8Q8N427 588 aa13.02□□□□□ -0.33
LDLR-212ENST00000560467 FBXL6Q8N531 539 aa13.02□□□□□ -0.33
LDLR-212ENST00000560467 COLGALT1Q8NBJ5 622 aa13.02□□□□□ -0.33
LDLR-212ENST00000560467 RAD54LQ92698 747 aa13.02□□□□□ -0.33
LDLR-212ENST00000560467 GSDMAQ96QA5 445 aa13.02□□□□□ -0.33
LDLR-212ENST00000560467 LXNQ9BS40 222 aa13.02□□□□□ -0.33
LDLR-212ENST00000560467 APOL5Q9BWW9 433 aa13.02□□□□□ -0.33
LDLR-212ENST00000560467 TSPY26PQ9H489 355 aa13.02□□□□□ -0.33
LDLR-212ENST00000560467 TYW1Q9NV66 732 aaKnown RBP13.02□□□□□ -0.33
LDLR-212ENST00000560467 FAM86C1Q9NVL1 165 aa13.02□□□□□ -0.33
LDLR-212ENST00000560467 ANO10Q9NW15 660 aa13.02□□□□□ -0.33
LDLR-212ENST00000560467 KCND2Q9NZV8 630 aa13.02□□□□□ -0.33
LDLR-212ENST00000560467 ST3GAL5Q9UNP4 418 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms