RNA–Protein interactions for RNA: ENST00000559886.1

HERC1-205, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 1 (best)

Gene HERC1, Length 2,462 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-205ENST00000559886 A0A087WZ62 844 aa13.35□□□□□ -0.27
HERC1-205ENST00000559886 HNRNPDLO14979 420 aaKnown RBP13.35□□□□□ -0.27
HERC1-205ENST00000559886 ADSSP30520 456 aa13.35□□□□□ -0.27
HERC1-205ENST00000559886 MARSP56192 900 aaKnown RBP13.35□□□□□ -0.27
HERC1-205ENST00000559886 NLRP11P59045 1033 aaKnown RBP13.35□□□□□ -0.27
HERC1-205ENST00000559886 ITGA7Q13683 1181 aa13.35□□□□□ -0.27
HERC1-205ENST00000559886 MAPK6Q16659 721 aa13.35□□□□□ -0.27
HERC1-205ENST00000559886 FAM47CQ5HY64 1035 aa13.35□□□□□ -0.27
HERC1-205ENST00000559886 TAF2Q6P1X5 1199 aa13.35□□□□□ -0.27
HERC1-205ENST00000559886 CREBRFQ8IUR6 639 aa13.35□□□□□ -0.27
HERC1-205ENST00000559886 DNAJB3Q8WWF6 145 aa13.35□□□□□ -0.27
HERC1-205ENST00000559886 PDLIM2Q96JY6 352 aa13.35□□□□□ -0.27
HERC1-205ENST00000559886 DEFB118Q96PH6 123 aa13.35□□□□□ -0.27
HERC1-205ENST00000559886 FDXACB1Q9BRP7 624 aaPredicted RBP13.35□□□□□ -0.27
HERC1-205ENST00000559886 FZD8Q9H461 694 aa13.35□□□□□ -0.27
HERC1-205ENST00000559886 A0A1B0GTH6 734 aa13.34□□□□□ -0.27
HERC1-205ENST00000559886 CBFA2T2O43439 604 aa13.34□□□□□ -0.27
HERC1-205ENST00000559886 MYCP01106 439 aaPredicted RBP13.34□□□□□ -0.27
HERC1-205ENST00000559886 EDN1P05305 212 aa13.34□□□□□ -0.27
HERC1-205ENST00000559886 DEKP35659 375 aaKnown RBP13.34□□□□□ -0.27
HERC1-205ENST00000559886 MBTD1Q05BQ5 628 aa13.34□□□□□ -0.27
HERC1-205ENST00000559886 PTPN11Q06124 597 aaPredicted RBP13.34□□□□□ -0.27
HERC1-205ENST00000559886 NME8Q8N427 588 aa13.34□□□□□ -0.27
HERC1-205ENST00000559886 VTI1AQ96AJ9 217 aa13.34□□□□□ -0.27
HERC1-205ENST00000559886 BICD1Q96G01 975 aa13.34□□□□□ -0.27
HERC1-205ENST00000559886 CBWD1Q9BRT8 395 aa13.34□□□□□ -0.27
HERC1-205ENST00000559886 ADAMTS10Q9H324 1103 aa13.34□□□□□ -0.27
HERC1-205ENST00000559886 MINDY3Q9H8M7 445 aa13.34□□□□□ -0.27
HERC1-205ENST00000559886 OGDHLQ9ULD0 1010 aa13.34□□□□□ -0.27
HERC1-205ENST00000559886 PHF24Q9UPV7 400 aa13.34□□□□□ -0.27
HERC1-205ENST00000559886 A0A1W2PQ45 241 aaPredicted RBP13.34□□□□□ -0.27
HERC1-205ENST00000559886 A0A1W2PQY0 241 aa13.34□□□□□ -0.27
HERC1-205ENST00000559886 KBTBD13C9JR72 458 aa13.34□□□□□ -0.27
HERC1-205ENST00000559886 INO80B-WBP1J3KQ70 363 aa13.34□□□□□ -0.27
HERC1-205ENST00000559886 DNM1LO00429 736 aa13.34□□□□□ -0.27
HERC1-205ENST00000559886 SLC16A3O15427 465 aaKnown RBP13.34□□□□□ -0.27
HERC1-205ENST00000559886 GPR32O75388 356 aa13.34□□□□□ -0.27
HERC1-205ENST00000559886 AKAP3O75969 853 aa13.34□□□□□ -0.27
HERC1-205ENST00000559886 PRKCBP05771 671 aa13.34□□□□□ -0.27
HERC1-205ENST00000559886 CASP4P49662 377 aa13.34□□□□□ -0.27
HERC1-205ENST00000559886 LIG4P49917 911 aa13.34□□□□□ -0.27
HERC1-205ENST00000559886 CYP2J2P51589 502 aa13.34□□□□□ -0.27
HERC1-205ENST00000559886 COPB1P53618 953 aaKnown RBP13.34□□□□□ -0.27
HERC1-205ENST00000559886 ARMCX5Q6P1M9 558 aa13.34□□□□□ -0.27
HERC1-205ENST00000559886 ZPBP2Q6X784 338 aa13.34□□□□□ -0.27
HERC1-205ENST00000559886 ZNF710Q8N1W2 664 aa13.34□□□□□ -0.27
HERC1-205ENST00000559886 NLRP7Q8WX94 980 aa13.34□□□□□ -0.27
HERC1-205ENST00000559886 ZNF333Q96JL9 665 aa13.34□□□□□ -0.27
HERC1-205ENST00000559886 PPP1R16BQ96T49 567 aa13.34□□□□□ -0.27
HERC1-205ENST00000559886 TUBGCP2Q9BSJ2 902 aa13.34□□□□□ -0.27
HERC1-205ENST00000559886 MKNK1Q9BUB5 465 aa13.34□□□□□ -0.27
HERC1-205ENST00000559886 INO80BQ9C086 356 aaPredicted RBP13.34□□□□□ -0.27
HERC1-205ENST00000559886 INTS13Q9NVM9 706 aa13.34□□□□□ -0.27
HERC1-205ENST00000559886 STYXL1Q9Y6J8 313 aa13.34□□□□□ -0.27
HERC1-205ENST00000559886 ACKR2O00590 384 aa13.33□□□□□ -0.28
HERC1-205ENST00000559886 IQCF3P0C7M6 154 aa13.33□□□□□ -0.28
HERC1-205ENST00000559886 GARTP22102 1010 aa13.33□□□□□ -0.28
HERC1-205ENST00000559886 MTIF2P46199 727 aaKnown RBP13.33□□□□□ -0.28
HERC1-205ENST00000559886 NR1I3Q14994 352 aa13.33□□□□□ -0.28
HERC1-205ENST00000559886 FAM187BQ17R55 369 aa13.33□□□□□ -0.28
HERC1-205ENST00000559886 KIZQ2M2Z5 673 aa13.33□□□□□ -0.28
HERC1-205ENST00000559886 CCDC40Q4G0X9 1142 aa13.33□□□□□ -0.28
HERC1-205ENST00000559886 CEP135Q66GS9 1140 aa13.33□□□□□ -0.28
HERC1-205ENST00000559886 FRMD5Q7Z6J6 570 aa13.33□□□□□ -0.28
HERC1-205ENST00000559886 SERINC5Q86VE9 423 aa13.33□□□□□ -0.28
HERC1-205ENST00000559886 ARMC5Q96C12 935 aa13.33□□□□□ -0.28
HERC1-205ENST00000559886 TARS2Q9BW92 718 aaKnown RBP13.33□□□□□ -0.28
HERC1-205ENST00000559886 MRPL4Q9BYD3 311 aaKnown RBP13.33□□□□□ -0.28
HERC1-205ENST00000559886 RTN4Q9NQC3 1192 aaKnown RBP13.33□□□□□ -0.28
HERC1-205ENST00000559886 TAB2Q9NYJ8 693 aa13.33□□□□□ -0.28
HERC1-205ENST00000559886 HSPBP1Q9NZL4 362 aa13.33□□□□□ -0.28
HERC1-205ENST00000559886 TPM3P06753 285 aa13.33□□□□□ -0.28
HERC1-205ENST00000559886 EPB41P11171 864 aaKnown RBP13.33□□□□□ -0.28
HERC1-205ENST00000559886 CDC25BP30305 580 aa13.33□□□□□ -0.28
HERC1-205ENST00000559886 PSMC2P35998 433 aaKnown RBP13.33□□□□□ -0.28
HERC1-205ENST00000559886 TMEM62Q0P6H9 643 aa13.33□□□□□ -0.28
HERC1-205ENST00000559886 CCDC173Q0VFZ6 552 aa13.33□□□□□ -0.28
HERC1-205ENST00000559886 FILIP1LQ4L180 1135 aa13.33□□□□□ -0.28
HERC1-205ENST00000559886 SRGAP1Q7Z6B7 1085 aa13.33□□□□□ -0.28
HERC1-205ENST00000559886 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.33□□□□□ -0.28
HERC1-205ENST00000559886 SLC43A3Q8NBI5 491 aa13.33□□□□□ -0.28
HERC1-205ENST00000559886 XXYLT1Q8NBI6 393 aa13.33□□□□□ -0.28
HERC1-205ENST00000559886 BORCS6Q96GS4 357 aa13.33□□□□□ -0.28
HERC1-205ENST00000559886 SCLT1Q96NL6 688 aa13.33□□□□□ -0.28
HERC1-205ENST00000559886 PPP1R9BQ96SB3 815 aa13.33□□□□□ -0.28
HERC1-205ENST00000559886 VPS16Q9H269 839 aa13.33□□□□□ -0.28
HERC1-205ENST00000559886 PCIF1Q9H4Z3 704 aa13.33□□□□□ -0.28
HERC1-205ENST00000559886 PRMT7Q9NVM4 692 aaPredicted RBP13.33□□□□□ -0.28
HERC1-205ENST00000559886 USP20Q9Y2K6 914 aa13.33□□□□□ -0.28
HERC1-205ENST00000559886 FRMD4BQ9Y2L6 1034 aa13.33□□□□□ -0.28
HERC1-205ENST00000559886 TTLL13PA6NNM8 815 aa13.32□□□□□ -0.28
HERC1-205ENST00000559886 N4BP3O15049 544 aa13.32□□□□□ -0.28
HERC1-205ENST00000559886 EXOC3O60645 756 aa13.32□□□□□ -0.28
HERC1-205ENST00000559886 MIIPQ5JXC2 388 aa13.32□□□□□ -0.28
HERC1-205ENST00000559886 SLFN12LQ6IEE8 588 aa13.32□□□□□ -0.28
HERC1-205ENST00000559886 RPAINQ86UA6 219 aa13.32□□□□□ -0.28
HERC1-205ENST00000559886 TRIM59Q8IWR1 403 aa13.32□□□□□ -0.28
HERC1-205ENST00000559886 POMGNT1Q8WZA1 660 aa13.32□□□□□ -0.28
HERC1-205ENST00000559886 ACO2Q99798 780 aaKnown RBP13.32□□□□□ -0.28
HERC1-205ENST00000559886 METTL14Q9HCE5 456 aaKnown RBP13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms