RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 KCTD10Q9H3F6 313 aa2.14□□□□□ -2.07
USP3-209ENST00000558925 DMRT3Q9NQL9 472 aa2.14□□□□□ -2.07
USP3-209ENST00000558925 ZNF277Q9NRM2 450 aaPredicted RBP2.14□□□□□ -2.07
USP3-209ENST00000558925 GEMIN8Q9NWZ8 242 aaKnown RBP2.14□□□□□ -2.07
USP3-209ENST00000558925 DPP7Q9UHL4 492 aa2.14□□□□□ -2.07
USP3-209ENST00000558925 MAGEL2Q9UJ55 1249 aa2.14□□□□□ -2.07
USP3-209ENST00000558925 DBR1Q9UK59 544 aaKnown RBP2.14□□□□□ -2.07
USP3-209ENST00000558925 ZFR2Q9UPR6 939 aaKnown RBP2.14□□□□□ -2.07
USP3-209ENST00000558925 DNM3Q9UQ16 869 aa2.14□□□□□ -2.07
USP3-209ENST00000558925 FAM50BQ9Y247 325 aa2.14□□□□□ -2.07
USP3-209ENST00000558925 ANKRD6Q9Y2G4 727 aa2.14□□□□□ -2.07
USP3-209ENST00000558925 TESMINQ9Y4I5 508 aa2.14□□□□□ -2.07
USP3-209ENST00000558925 GPR45Q9Y5Y3 372 aa2.14□□□□□ -2.07
USP3-209ENST00000558925 FRMPD2Q68DX3 1309 aaPredicted RBP2.14□□□□□ -2.07
USP3-209ENST00000558925 ZNF839A8K0R7 811 aa2.13□□□□□ -2.07
USP3-209ENST00000558925 GOLGA6L22H0YM25 854 aa2.13□□□□□ -2.07
USP3-209ENST00000558925 DDX3XO00571 662 aaKnown RBP eCLIP2.13□□□□□ -2.07
USP3-209ENST00000558925 AP1G1O43747 822 aa2.13□□□□□ -2.07
USP3-209ENST00000558925 CAND2O75155 1236 aa2.13□□□□□ -2.07
USP3-209ENST00000558925 ZNF202O95125 648 aa2.13□□□□□ -2.07
USP3-209ENST00000558925 PCDH8O95206 1070 aa2.13□□□□□ -2.07
USP3-209ENST00000558925 KRT18P05783 430 aaKnown RBP2.13□□□□□ -2.07
USP3-209ENST00000558925 MYL1P05976 194 aa2.13□□□□□ -2.07
USP3-209ENST00000558925 PTGS1P23219 599 aa2.13□□□□□ -2.07
USP3-209ENST00000558925 CYP2C19P33261 490 aa2.13□□□□□ -2.07
USP3-209ENST00000558925 GLRBP48167 497 aa2.13□□□□□ -2.07
USP3-209ENST00000558925 NEK3P51956 506 aa2.13□□□□□ -2.07
USP3-209ENST00000558925 EPHB4P54760 987 aa2.13□□□□□ -2.07
USP3-209ENST00000558925 KRTAP10-11P60412 298 aa2.13□□□□□ -2.07
USP3-209ENST00000558925 HERVK_113P62684 666 aa2.13□□□□□ -2.07
USP3-209ENST00000558925 KRT85P78386 507 aa2.13□□□□□ -2.07
USP3-209ENST00000558925 RBM10P98175 930 aaKnown RBP2.13□□□□□ -2.07
USP3-209ENST00000558925 PURAQ00577 322 aaKnown RBP2.13□□□□□ -2.07
USP3-209ENST00000558925 ALDH6A1Q02252 535 aaKnown RBP2.13□□□□□ -2.07
USP3-209ENST00000558925 PPARAQ07869 468 aa2.13□□□□□ -2.07
USP3-209ENST00000558925 ADCY2Q08462 1091 aa2.13□□□□□ -2.07
USP3-209ENST00000558925 DBPQ10586 325 aaPredicted RBP2.13□□□□□ -2.07
USP3-209ENST00000558925 UBE4AQ14139 1066 aa2.13□□□□□ -2.07
USP3-209ENST00000558925 GBX1Q14549 363 aa2.13□□□□□ -2.07
USP3-209ENST00000558925 MUM1Q2TAK8 710 aa2.13□□□□□ -2.07
USP3-209ENST00000558925 UAP1L1Q3KQV9 507 aa2.13□□□□□ -2.07
USP3-209ENST00000558925 ARHGAP29Q52LW3 1261 aa2.13□□□□□ -2.07
USP3-209ENST00000558925 SLFN12LQ6IEE8 588 aa2.13□□□□□ -2.07
USP3-209ENST00000558925 CYB5RLQ6IPT4 315 aa2.13□□□□□ -2.07
USP3-209ENST00000558925 CCSAPQ6IQ19 270 aaPredicted RBP2.13□□□□□ -2.07
USP3-209ENST00000558925 KIAA1841Q6NSI8 718 aa2.13□□□□□ -2.07
USP3-209ENST00000558925 PPP4R4Q6NUP7 873 aa2.13□□□□□ -2.07
USP3-209ENST00000558925 TEPPQ6URK8 271 aa2.13□□□□□ -2.07
USP3-209ENST00000558925 ESPNLQ6ZVH7 1005 aa2.13□□□□□ -2.07
USP3-209ENST00000558925 DGKHQ86XP1 1220 aa2.13□□□□□ -2.07
USP3-209ENST00000558925 LDLRAD3Q86YD5 345 aa2.13□□□□□ -2.07
USP3-209ENST00000558925 MIB1Q86YT6 1006 aa2.13□□□□□ -2.07
USP3-209ENST00000558925 CERS3Q8IU89 383 aa2.13□□□□□ -2.07
USP3-209ENST00000558925 PHYKPLQ8IUZ5 450 aa2.13□□□□□ -2.07
USP3-209ENST00000558925 SLC41A1Q8IVJ1 513 aa2.13□□□□□ -2.07
USP3-209ENST00000558925 TRIM48Q8IWZ4 208 aa2.13□□□□□ -2.07
USP3-209ENST00000558925 CCAR1Q8IX12 1150 aaKnown RBP2.13□□□□□ -2.07
USP3-209ENST00000558925 FAM126BQ8IXS8 530 aa2.13□□□□□ -2.07
USP3-209ENST00000558925 GRAMD1CQ8IYS0 662 aa2.13□□□□□ -2.07
USP3-209ENST00000558925 AMER2Q8N7J2 671 aa2.13□□□□□ -2.07
USP3-209ENST00000558925 ZBTB34Q8NCN2 500 aa2.13□□□□□ -2.07
USP3-209ENST00000558925 TTLL11Q8NHH1 800 aa2.13□□□□□ -2.07
USP3-209ENST00000558925 RIN2Q8WYP3 895 aaPredicted RBP2.13□□□□□ -2.07
USP3-209ENST00000558925 RAB24Q969Q5 203 aa2.13□□□□□ -2.07
USP3-209ENST00000558925 MAML3Q96JK9 1138 aa2.13□□□□□ -2.07
USP3-209ENST00000558925 SCYL1Q96KG9 808 aa2.13□□□□□ -2.07
USP3-209ENST00000558925 ZSWIM3Q96MP5 696 aa2.13□□□□□ -2.07
USP3-209ENST00000558925 AIFM3Q96NN9 605 aa2.13□□□□□ -2.07
USP3-209ENST00000558925 TAAR9Q96RI9 348 aa2.13□□□□□ -2.07
USP3-209ENST00000558925 RPS6KC1Q96S38 1066 aa2.13□□□□□ -2.07
USP3-209ENST00000558925 NMRK2Q9NPI5 230 aa2.13□□□□□ -2.07
USP3-209ENST00000558925 DTLQ9NZJ0 730 aa2.13□□□□□ -2.07
USP3-209ENST00000558925 ARHGAP28Q9P2N2 729 aa2.13□□□□□ -2.07
USP3-209ENST00000558925 SAP30BPQ9UHR5 308 aaKnown RBP2.13□□□□□ -2.07
USP3-209ENST00000558925 EVLQ9UI08 416 aaPredicted RBP2.13□□□□□ -2.07
USP3-209ENST00000558925 NUDT5Q9UKK9 219 aa2.13□□□□□ -2.07
USP3-209ENST00000558925 PNMA8BQ9ULN7 279 aaPredicted RBP2.13□□□□□ -2.07
USP3-209ENST00000558925 USP18Q9UMW8 372 aa2.13□□□□□ -2.07
USP3-209ENST00000558925 RIPOR2Q9Y4F9 1068 aa2.13□□□□□ -2.07
USP3-209ENST00000558925 ASB1Q9Y576 335 aa2.13□□□□□ -2.07
USP3-209ENST00000558925 NUB1Q9Y5A7 615 aa2.13□□□□□ -2.07
USP3-209ENST00000558925 MRFAP1Q9Y605 127 aa2.13□□□□□ -2.07
USP3-209ENST00000558925 A0A087X1B8 175 aa2.12□□□□□ -2.07
USP3-209ENST00000558925 ST20-MTHFSA0A0A6YYL1 179 aa2.12□□□□□ -2.07
USP3-209ENST00000558925 GOLGA6CA6NDK9 693 aa2.12□□□□□ -2.07
USP3-209ENST00000558925 GOLGA6BA6NDN3 693 aa2.12□□□□□ -2.07
USP3-209ENST00000558925 CCDC154A6NI56 674 aa2.12□□□□□ -2.07
USP3-209ENST00000558925 PLIN1O60240 522 aa2.12□□□□□ -2.07
USP3-209ENST00000558925 ZNF623O75123 536 aa2.12□□□□□ -2.07
USP3-209ENST00000558925 OFD1O75665 1012 aa2.12□□□□□ -2.07
USP3-209ENST00000558925 IL18BPO95998 194 aa2.12□□□□□ -2.07
USP3-209ENST00000558925 MYL3P08590 195 aa2.12□□□□□ -2.07
USP3-209ENST00000558925 POU2F2P09086 479 aa2.12□□□□□ -2.07
USP3-209ENST00000558925 GOLGA6DP0CG33 693 aa2.12□□□□□ -2.07
USP3-209ENST00000558925 HSPA6P17066 643 aa2.12□□□□□ -2.07
USP3-209ENST00000558925 EDNRBP24530 442 aa2.12□□□□□ -2.07
USP3-209ENST00000558925 ADCY8P40145 1251 aa2.12□□□□□ -2.07
USP3-209ENST00000558925 USP14P54578 494 aa2.12□□□□□ -2.07
USP3-209ENST00000558925 ADKP55263 362 aaKnown RBP2.12□□□□□ -2.07
USP3-209ENST00000558925 KRTAP10-7P60409 375 aaPredicted RBP2.12□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms