RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 DDX11Q96FC9 970 aa5.79□□□□□ -1.48
LDLR-209ENST00000558528 CEP95Q96GE4 821 aa5.79□□□□□ -1.48
LDLR-209ENST00000558528 SNX27Q96L92 541 aa5.79□□□□□ -1.48
LDLR-209ENST00000558528 MAGEB10Q96LZ2 347 aaPredicted RBP5.79□□□□□ -1.48
LDLR-209ENST00000558528 SLC6A18Q96N87 628 aa5.79□□□□□ -1.48
LDLR-209ENST00000558528 SARGQ9BW04 601 aa5.79□□□□□ -1.48
LDLR-209ENST00000558528 SPZ1Q9BXG8 430 aa5.79□□□□□ -1.48
LDLR-209ENST00000558528 KLHL25Q9H0H3 589 aa5.79□□□□□ -1.48
LDLR-209ENST00000558528 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP5.79□□□□□ -1.48
LDLR-209ENST00000558528 FOXP1Q9H334 677 aaPredicted RBP5.79□□□□□ -1.48
LDLR-209ENST00000558528 CASS4Q9NQ75 786 aa5.79□□□□□ -1.48
LDLR-209ENST00000558528 SUSD2Q9UGT4 822 aa5.79□□□□□ -1.48
LDLR-209ENST00000558528 PGAP2Q9UHJ9 254 aa5.79□□□□□ -1.48
LDLR-209ENST00000558528 USP25Q9UHP3 1055 aa5.79□□□□□ -1.48
LDLR-209ENST00000558528 CEP131Q9UPN4 1083 aa5.79□□□□□ -1.48
LDLR-209ENST00000558528 MTMR6Q9Y217 621 aa5.79□□□□□ -1.48
LDLR-209ENST00000558528 ANKRD6Q9Y2G4 727 aa5.79□□□□□ -1.48
LDLR-209ENST00000558528 MAST2Q6P0Q8 1798 aa5.78□□□□□ -1.48
LDLR-209ENST00000558528 AK9Q5TCS8 1911 aa5.78□□□□□ -1.48
LDLR-209ENST00000558528 A0A1W2PPC1 479 aa5.78□□□□□ -1.48
LDLR-209ENST00000558528 GOLGA6L4A6NEF3 574 aa5.78□□□□□ -1.48
LDLR-209ENST00000558528 VSTM5A8MXK1 200 aa5.78□□□□□ -1.48
LDLR-209ENST00000558528 C19orf81C9J6K1 198 aa5.78□□□□□ -1.48
LDLR-209ENST00000558528 JAK2O60674 1132 aa5.78□□□□□ -1.48
LDLR-209ENST00000558528 PLA2G6O60733 806 aa5.78□□□□□ -1.48
LDLR-209ENST00000558528 DNAJA2O60884 412 aa5.78□□□□□ -1.48
LDLR-209ENST00000558528 ULK1O75385 1050 aa5.78□□□□□ -1.48
LDLR-209ENST00000558528 CLEC3AO75596 197 aa5.78□□□□□ -1.48
LDLR-209ENST00000558528 CTDNEP1O95476 244 aa5.78□□□□□ -1.48
LDLR-209ENST00000558528 BMP15O95972 392 aa5.78□□□□□ -1.48
LDLR-209ENST00000558528 MBD3O95983 291 aa5.78□□□□□ -1.48
LDLR-209ENST00000558528 CAPNS1P04632 268 aa5.78□□□□□ -1.48
LDLR-209ENST00000558528 C6orf222P0C671 652 aaPredicted RBP5.78□□□□□ -1.48
LDLR-209ENST00000558528 JMJD7P0C870 316 aa5.78□□□□□ -1.48
LDLR-209ENST00000558528 SNHG28P0DPA3 235 aa5.78□□□□□ -1.48
LDLR-209ENST00000558528 EN2P19622 333 aaPredicted RBP5.78□□□□□ -1.48
LDLR-209ENST00000558528 CD33P20138 364 aa5.78□□□□□ -1.48
LDLR-209ENST00000558528 GRK4P32298 578 aa5.78□□□□□ -1.48
LDLR-209ENST00000558528 SLC1A4P43007 532 aa5.78□□□□□ -1.48
LDLR-209ENST00000558528 HUNKP57058 714 aa5.78□□□□□ -1.48
LDLR-209ENST00000558528 GSTM4Q03013 218 aa5.78□□□□□ -1.48
LDLR-209ENST00000558528 ST3GAL1Q11201 340 aa5.78□□□□□ -1.48
LDLR-209ENST00000558528 MAP4K2Q12851 820 aa5.78□□□□□ -1.48
LDLR-209ENST00000558528 GTF2H3Q13889 308 aa5.78□□□□□ -1.48
LDLR-209ENST00000558528 POU4F3Q15319 338 aa5.78□□□□□ -1.48
LDLR-209ENST00000558528 SEPT7Q16181 437 aaKnown RBP5.78□□□□□ -1.48
LDLR-209ENST00000558528 PFKFB3Q16875 520 aaPredicted RBP5.78□□□□□ -1.48
LDLR-209ENST00000558528 SLC4A8Q2Y0W8 1093 aa5.78□□□□□ -1.48
LDLR-209ENST00000558528 ANKRD39Q53RE8 183 aa5.78□□□□□ -1.48
LDLR-209ENST00000558528 TMEM240Q5SV17 173 aa5.78□□□□□ -1.48
LDLR-209ENST00000558528 ACBD5Q5T8D3 534 aaPredicted RBP5.78□□□□□ -1.48
LDLR-209ENST00000558528 ANGEL2Q5VTE6 544 aaKnown RBP5.78□□□□□ -1.48
LDLR-209ENST00000558528 SLFN13Q68D06 897 aa5.78□□□□□ -1.48
LDLR-209ENST00000558528 SLC6A19Q695T7 634 aa5.78□□□□□ -1.48
LDLR-209ENST00000558528 MCTP1Q6DN14 999 aa5.78□□□□□ -1.48
LDLR-209ENST00000558528 RGMBQ6NW40 437 aa5.78□□□□□ -1.48
LDLR-209ENST00000558528 LHFPL2Q6ZUX7 228 aa5.78□□□□□ -1.48
LDLR-209ENST00000558528 CDC37L1Q7L3B6 337 aa5.78□□□□□ -1.48
LDLR-209ENST00000558528 RAB44Q7Z6P3 723 aaPredicted RBP5.78□□□□□ -1.48
LDLR-209ENST00000558528 PCGF5Q86SE9 256 aa5.78□□□□□ -1.48
LDLR-209ENST00000558528 FAM160B2Q86V87 743 aa5.78□□□□□ -1.48
LDLR-209ENST00000558528 FCHSD1Q86WN1 690 aa5.78□□□□□ -1.48
LDLR-209ENST00000558528 MCATQ8IVS2 390 aaKnown RBP5.78□□□□□ -1.48
LDLR-209ENST00000558528 ZFPM1Q8IX07 1006 aa5.78□□□□□ -1.48
LDLR-209ENST00000558528 SPICE1Q8N0Z3 855 aa5.78□□□□□ -1.48
LDLR-209ENST00000558528 NME8Q8N427 588 aa5.78□□□□□ -1.48
LDLR-209ENST00000558528 PAF1Q8N7H5 531 aa5.78□□□□□ -1.48
LDLR-209ENST00000558528 SLC44A5Q8NCS7 719 aa5.78□□□□□ -1.48
LDLR-209ENST00000558528 PJA1Q8NG27 643 aa5.78□□□□□ -1.48
LDLR-209ENST00000558528 SLC7A14Q8TBB6 771 aa5.78□□□□□ -1.48
LDLR-209ENST00000558528 KCTD13Q8WZ19 329 aa5.78□□□□□ -1.48
LDLR-209ENST00000558528 LPAR1Q92633 364 aa5.78□□□□□ -1.48
LDLR-209ENST00000558528 SYAP1Q96A49 352 aaPredicted RBP5.78□□□□□ -1.48
LDLR-209ENST00000558528 FAM122AQ96E09 287 aa5.78□□□□□ -1.48
LDLR-209ENST00000558528 CCDC74BQ96LY2 380 aa5.78□□□□□ -1.48
LDLR-209ENST00000558528 GLIS2Q9BZE0 524 aaPredicted RBP5.78□□□□□ -1.48
LDLR-209ENST00000558528 WNT10AQ9GZT5 417 aa5.78□□□□□ -1.48
LDLR-209ENST00000558528 OSGEPQ9NPF4 335 aa5.78□□□□□ -1.48
LDLR-209ENST00000558528 PICK1Q9NRD5 415 aa5.78□□□□□ -1.48
LDLR-209ENST00000558528 WHRNQ9P202 907 aa5.78□□□□□ -1.48
LDLR-209ENST00000558528 RAPGEFL1Q9UHV5 662 aa5.78□□□□□ -1.48
LDLR-209ENST00000558528 NOL7Q9UMY1 257 aaKnown RBP5.78□□□□□ -1.48
LDLR-209ENST00000558528 GIT1Q9Y2X7 761 aa5.78□□□□□ -1.48
LDLR-209ENST00000558528 TMX2Q9Y320 296 aa5.78□□□□□ -1.48
LDLR-209ENST00000558528 SYNGAP1Q96PV0 1343 aa5.77□□□□□ -1.49
LDLR-209ENST00000558528 TAF1P21675 1872 aa5.77□□□□□ -1.49
LDLR-209ENST00000558528 FAM86C2PA6NEL3 165 aa5.77□□□□□ -1.49
LDLR-209ENST00000558528 CHURC1-FNTBB4DL54 471 aa5.77□□□□□ -1.49
LDLR-209ENST00000558528 F5H6K3 240 aa5.77□□□□□ -1.49
LDLR-209ENST00000558528 AQP7O14520 342 aa5.77□□□□□ -1.49
LDLR-209ENST00000558528 MAFGO15525 162 aa5.77□□□□□ -1.49
LDLR-209ENST00000558528 NMT2O60551 498 aa5.77□□□□□ -1.49
LDLR-209ENST00000558528 LETM1O95202 739 aaPredicted RBP5.77□□□□□ -1.49
LDLR-209ENST00000558528 GH2P01242 217 aa5.77□□□□□ -1.49
LDLR-209ENST00000558528 SLFN14P0C7P3 912 aa5.77□□□□□ -1.49
LDLR-209ENST00000558528 PDHBP11177 359 aa5.77□□□□□ -1.49
LDLR-209ENST00000558528 BMP3P12645 472 aa5.77□□□□□ -1.49
LDLR-209ENST00000558528 SCG2P13521 617 aa5.77□□□□□ -1.49
LDLR-209ENST00000558528 EEF2P13639 858 aaKnown RBP5.77□□□□□ -1.49
LDLR-209ENST00000558528 FDPSP14324 419 aaKnown RBP5.77□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms