RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 DUPD1Q68J44 220 aa12.18□□□□□ -0.46
LDLR-208ENST00000558518 ZNF804AQ7Z570 1209 aa12.18□□□□□ -0.46
LDLR-208ENST00000558518 FAM178BQ8IXR5 827 aa12.18□□□□□ -0.46
LDLR-208ENST00000558518 PRELID2Q8N945 189 aa12.18□□□□□ -0.46
LDLR-208ENST00000558518 ZNF653Q96CK0 615 aa12.18□□□□□ -0.46
LDLR-208ENST00000558518 HAUS1Q96CS2 278 aa12.18□□□□□ -0.46
LDLR-208ENST00000558518 SLCO1B3Q9NPD5 702 aa12.18□□□□□ -0.46
LDLR-208ENST00000558518 ZMYND8Q9ULU4 1186 aaPredicted RBP12.18□□□□□ -0.46
LDLR-208ENST00000558518 RPTORQ8N122 1335 aa12.17□□□□□ -0.46
LDLR-208ENST00000558518 PNMA6FA0A0J9YX94 578 aa12.17□□□□□ -0.46
LDLR-208ENST00000558518 GOLGA8SH3BPF8 625 aa12.17□□□□□ -0.46
LDLR-208ENST00000558518 GOLGA8MH3BSY2 632 aa12.17□□□□□ -0.46
LDLR-208ENST00000558518 QRICH1Q2TAL8 776 aa12.17□□□□□ -0.46
LDLR-208ENST00000558518 C10orf76Q5T2E6 689 aa12.17□□□□□ -0.46
LDLR-208ENST00000558518 ARMC3Q5W041 872 aa12.17□□□□□ -0.46
LDLR-208ENST00000558518 LLGL2Q6P1M3 1020 aa12.17□□□□□ -0.46
LDLR-208ENST00000558518 RNF207Q6ZRF8 634 aa12.17□□□□□ -0.46
LDLR-208ENST00000558518 HES6Q96HZ4 224 aa12.17□□□□□ -0.46
LDLR-208ENST00000558518 TRIM7Q9C029 511 aa12.17□□□□□ -0.46
LDLR-208ENST00000558518 STMN4Q9H169 189 aaPredicted RBP12.17□□□□□ -0.46
LDLR-208ENST00000558518 ADAM7Q9H2U9 754 aa12.17□□□□□ -0.46
LDLR-208ENST00000558518 SUGT1Q9Y2Z0 365 aa12.17□□□□□ -0.46
LDLR-208ENST00000558518 CCDC189A1A4V9 331 aa12.17□□□□□ -0.46
LDLR-208ENST00000558518 EDIL3O43854 480 aa12.17□□□□□ -0.46
LDLR-208ENST00000558518 CBX6O95503 412 aa12.17□□□□□ -0.46
LDLR-208ENST00000558518 ECEL1O95672 775 aa12.17□□□□□ -0.46
LDLR-208ENST00000558518 PSMC2P35998 433 aaKnown RBP12.17□□□□□ -0.46
LDLR-208ENST00000558518 MMP13P45452 471 aa12.17□□□□□ -0.46
LDLR-208ENST00000558518 KLRC3Q07444 240 aa12.17□□□□□ -0.46
LDLR-208ENST00000558518 MUM1Q2TAK8 710 aa12.17□□□□□ -0.46
LDLR-208ENST00000558518 ZDHHC24Q6UX98 284 aa12.17□□□□□ -0.46
LDLR-208ENST00000558518 ZNF622Q969S3 477 aaKnown RBP eCLIP12.17□□□□□ -0.463e-9■□□□□ 10.9
LDLR-208ENST00000558518 TLCD1Q96CP7 247 aa12.17□□□□□ -0.46
LDLR-208ENST00000558518 INTS2Q9H0H0 1204 aaKnown RBP12.17□□□□□ -0.46
LDLR-208ENST00000558518 MTMR4Q9NYA4 1195 aa12.17□□□□□ -0.46
LDLR-208ENST00000558518 PFASO15067 1338 aa12.17□□□□□ -0.46
LDLR-208ENST00000558518 PASKQ96RG2 1323 aa12.17□□□□□ -0.46
LDLR-208ENST00000558518 RASA4BC9J798 803 aa12.17□□□□□ -0.46
LDLR-208ENST00000558518 GOLGA8RI6L899 631 aa12.17□□□□□ -0.46
LDLR-208ENST00000558518 RASA4O43374 803 aa12.17□□□□□ -0.46
LDLR-208ENST00000558518 PLCB3Q01970 1234 aa12.17□□□□□ -0.46
LDLR-208ENST00000558518 LACTB2Q53H82 288 aaPredicted RBP12.17□□□□□ -0.46
LDLR-208ENST00000558518 SYCP2LQ5T4T6 812 aa12.17□□□□□ -0.46
LDLR-208ENST00000558518 PTF1AQ7RTS3 328 aa12.17□□□□□ -0.46
LDLR-208ENST00000558518 NUDCD1Q96RS6 583 aa12.17□□□□□ -0.46
LDLR-208ENST00000558518 KLF6Q99612 283 aaPredicted RBP12.17□□□□□ -0.46
LDLR-208ENST00000558518 PAGR1Q9BTK6 254 aa12.17□□□□□ -0.46
LDLR-208ENST00000558518 MYO3BQ8WXR4 1341 aa12.16□□□□□ -0.46
LDLR-208ENST00000558518 USP54Q70EL1 1684 aa12.16□□□□□ -0.46
LDLR-208ENST00000558518 DDX3YO15523 660 aaKnown RBP12.16□□□□□ -0.46
LDLR-208ENST00000558518 CYP26A1O43174 497 aa12.16□□□□□ -0.46
LDLR-208ENST00000558518 GDF11O95390 407 aa12.16□□□□□ -0.46
LDLR-208ENST00000558518 AGTP01019 485 aa12.16□□□□□ -0.46
LDLR-208ENST00000558518 FMO5P49326 533 aa12.16□□□□□ -0.46
LDLR-208ENST00000558518 OVGP1Q12889 678 aa12.16□□□□□ -0.46
LDLR-208ENST00000558518 AP1ARQ63HQ0 302 aa12.16□□□□□ -0.46
LDLR-208ENST00000558518 FRMD5Q7Z6J6 570 aa12.16□□□□□ -0.46
LDLR-208ENST00000558518 C5orf60A6NFR6 353 aa12.16□□□□□ -0.46
LDLR-208ENST00000558518 PPP1R12AO14974 1030 aaPredicted RBP12.16□□□□□ -0.46
LDLR-208ENST00000558518 IFNB1P01574 187 aa12.16□□□□□ -0.46
LDLR-208ENST00000558518 CHRM1P11229 460 aaPredicted RBP12.16□□□□□ -0.46
LDLR-208ENST00000558518 CALRP27797 417 aaKnown RBP12.16□□□□□ -0.46
LDLR-208ENST00000558518 DLG4P78352 724 aa12.16□□□□□ -0.46
LDLR-208ENST00000558518 ARHGAP4P98171 946 aa12.16□□□□□ -0.46
LDLR-208ENST00000558518 NBPF20Q3BBV1 942 aa12.16□□□□□ -0.46
LDLR-208ENST00000558518 VPS37BQ9H9H4 285 aa12.16□□□□□ -0.46
LDLR-208ENST00000558518 NKX1-2Q9UD57 310 aaPredicted RBP12.16□□□□□ -0.46
LDLR-208ENST00000558518 ABCB11O95342 1321 aa12.16□□□□□ -0.46
LDLR-208ENST00000558518 TNS2Q63HR2 1409 aa12.16□□□□□ -0.46
LDLR-208ENST00000558518 PHF2O75151 1096 aa12.16□□□□□ -0.46
LDLR-208ENST00000558518 DOK7Q18PE1 504 aa12.16□□□□□ -0.46
LDLR-208ENST00000558518 CYP4X1Q8N118 509 aa12.16□□□□□ -0.46
LDLR-208ENST00000558518 NUP85Q9BW27 656 aa12.16□□□□□ -0.46
LDLR-208ENST00000558518 EPB41L4BQ9H329 900 aa12.16□□□□□ -0.46
LDLR-208ENST00000558518 ZDHHC18Q9NUE0 388 aa12.16□□□□□ -0.46
LDLR-208ENST00000558518 CPSF2Q9P2I0 782 aaKnown RBP12.16□□□□□ -0.46
LDLR-208ENST00000558518 ENTPD5O75356 428 aa12.15□□□□□ -0.46
LDLR-208ENST00000558518 HOXD13P35453 343 aa12.15□□□□□ -0.46
LDLR-208ENST00000558518 CTCFP49711 727 aaPredicted RBP12.15□□□□□ -0.46
LDLR-208ENST00000558518 ZBTB16Q05516 673 aa12.15□□□□□ -0.46
LDLR-208ENST00000558518 C12orf65Q9H3J6 166 aaKnown RBP12.15□□□□□ -0.46
LDLR-208ENST00000558518 METTL14Q9HCE5 456 aaKnown RBP12.15□□□□□ -0.46
LDLR-208ENST00000558518 TYW1Q9NV66 732 aaKnown RBP12.15□□□□□ -0.46
LDLR-208ENST00000558518 GGA2Q9UJY4 613 aa12.15□□□□□ -0.46
LDLR-208ENST00000558518 SERPINA10Q9UK55 444 aa12.15□□□□□ -0.46
LDLR-208ENST00000558518 ARL2BPQ9Y2Y0 163 aa12.15□□□□□ -0.46
LDLR-208ENST00000558518 EMSYQ7Z589 1322 aa12.15□□□□□ -0.46
LDLR-208ENST00000558518 ASAP2O43150 1006 aa12.15□□□□□ -0.46
LDLR-208ENST00000558518 SGPL1O95470 568 aa12.15□□□□□ -0.46
LDLR-208ENST00000558518 GHRP10912 638 aa12.15□□□□□ -0.46
LDLR-208ENST00000558518 EPHB2P29323 1055 aa12.15□□□□□ -0.46
LDLR-208ENST00000558518 CCDC174Q6PII3 467 aa12.15□□□□□ -0.46
LDLR-208ENST00000558518 ZNF365Q70YC5 407 aa12.15□□□□□ -0.46
LDLR-208ENST00000558518 ZDHHC14Q8IZN3 488 aa12.15□□□□□ -0.46
LDLR-208ENST00000558518 TTC8Q8TAM2 541 aa12.15□□□□□ -0.46
LDLR-208ENST00000558518 DYDC2Q96IM9 177 aa12.15□□□□□ -0.46
LDLR-208ENST00000558518 ADAM22Q9P0K1 906 aa12.15□□□□□ -0.46
LDLR-208ENST00000558518 ANAPC5Q9UJX4 755 aa12.15□□□□□ -0.46
LDLR-208ENST00000558518 KAT6AQ92794 2004 aa12.15□□□□□ -0.46
LDLR-208ENST00000558518 CFAP73A6NFT4 308 aa12.15□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms