RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 FAM114A2Q9NRY5 505 aa13.3□□□□□ -0.28
LDLR-205ENST00000557933 GRHL1Q9NZI5 618 aa13.3□□□□□ -0.28
LDLR-205ENST00000557933 RABGAP1Q9Y3P9 1069 aa13.3□□□□□ -0.28
LDLR-205ENST00000557933 MSH4O15457 936 aa13.3□□□□□ -0.28
LDLR-205ENST00000557933 CLDN3O15551 220 aa13.3□□□□□ -0.28
LDLR-205ENST00000557933 SHMT1P34896 483 aa13.3□□□□□ -0.28
LDLR-205ENST00000557933 CHKAP35790 457 aa13.3□□□□□ -0.28
LDLR-205ENST00000557933 ALDH5A1P51649 535 aaPredicted RBP13.3□□□□□ -0.28
LDLR-205ENST00000557933 JAM2P57087 298 aa13.3□□□□□ -0.28
LDLR-205ENST00000557933 PTENP60484 403 aa13.3□□□□□ -0.28
LDLR-205ENST00000557933 SPIRE1Q08AE8 756 aa13.3□□□□□ -0.28
LDLR-205ENST00000557933 MAPK7Q13164 816 aa13.3□□□□□ -0.28
LDLR-205ENST00000557933 GRAPQ13588 217 aa13.3□□□□□ -0.28
LDLR-205ENST00000557933 SEPT2Q15019 361 aa13.3□□□□□ -0.28
LDLR-205ENST00000557933 RBM26Q5T8P6 1007 aaKnown RBP13.3□□□□□ -0.28
LDLR-205ENST00000557933 TRPM8Q7Z2W7 1104 aa13.3□□□□□ -0.28
LDLR-205ENST00000557933 ARHGEF19Q8IW93 802 aa13.3□□□□□ -0.28
LDLR-205ENST00000557933 SYCP3Q8IZU3 236 aa13.3□□□□□ -0.28
LDLR-205ENST00000557933 CERS5Q8N5B7 392 aa13.3□□□□□ -0.28
LDLR-205ENST00000557933 GRAPLQ8TC17 118 aaPredicted RBP13.3□□□□□ -0.28
LDLR-205ENST00000557933 DYDC2Q96IM9 177 aa13.3□□□□□ -0.28
LDLR-205ENST00000557933 CALR3Q96L12 384 aaKnown RBP13.3□□□□□ -0.28
LDLR-205ENST00000557933 HEMGNQ9BXL5 484 aa13.3□□□□□ -0.28
LDLR-205ENST00000557933 SLITRK6Q9H5Y7 841 aa13.3□□□□□ -0.28
LDLR-205ENST00000557933 ACTR5Q9H9F9 607 aaPredicted RBP13.3□□□□□ -0.28
LDLR-205ENST00000557933 KDM3AQ9Y4C1 1321 aa13.3□□□□□ -0.28
LDLR-205ENST00000557933 GOLGA6L10A0A0M3HER8 536 aa13.29□□□□□ -0.28
LDLR-205ENST00000557933 RASGRF2O14827 1237 aa13.29□□□□□ -0.28
LDLR-205ENST00000557933 CALUO43852 315 aaPredicted RBP13.29□□□□□ -0.28
LDLR-205ENST00000557933 EXOC3O60645 756 aa13.29□□□□□ -0.28
LDLR-205ENST00000557933 PPFIA2O75334 1257 aa13.29□□□□□ -0.28
LDLR-205ENST00000557933 YY1P25490 414 aa13.29□□□□□ -0.28
LDLR-205ENST00000557933 FMO5P49326 533 aa13.29□□□□□ -0.28
LDLR-205ENST00000557933 EDRF1Q3B7T1 1238 aa13.29□□□□□ -0.28
LDLR-205ENST00000557933 AGBL2Q5U5Z8 902 aa13.29□□□□□ -0.28
LDLR-205ENST00000557933 TRIM68Q6AZZ1 485 aa13.29□□□□□ -0.28
LDLR-205ENST00000557933 FRMD5Q7Z6J6 570 aa13.29□□□□□ -0.28
LDLR-205ENST00000557933 ANKS4BQ8N8V4 417 aa13.29□□□□□ -0.28
LDLR-205ENST00000557933 MIEF2Q96C03 454 aa13.29□□□□□ -0.28
LDLR-205ENST00000557933 TLCD1Q96CP7 247 aa13.29□□□□□ -0.28
LDLR-205ENST00000557933 GPR88Q9GZN0 384 aa13.29□□□□□ -0.28
LDLR-205ENST00000557933 KCNMB3Q9NPA1 279 aa13.29□□□□□ -0.28
LDLR-205ENST00000557933 WRAP73Q9P2S5 460 aaPredicted RBP13.29□□□□□ -0.28
LDLR-205ENST00000557933 PPIP5K2O43314 1243 aa13.29□□□□□ -0.28
LDLR-205ENST00000557933 SPOPO43791 374 aa13.29□□□□□ -0.28
LDLR-205ENST00000557933 ANP32DO95626 131 aa13.29□□□□□ -0.28
LDLR-205ENST00000557933 MPP2Q14168 576 aa13.29□□□□□ -0.28
LDLR-205ENST00000557933 KYNUQ16719 465 aa13.29□□□□□ -0.28
LDLR-205ENST00000557933 EMC10Q5UCC4 262 aa13.29□□□□□ -0.28
LDLR-205ENST00000557933 SLFN11Q7Z7L1 901 aa13.29□□□□□ -0.28
LDLR-205ENST00000557933 RASGEF1CQ8N431 466 aa13.29□□□□□ -0.28
LDLR-205ENST00000557933 LMBR1Q8WVP7 490 aa13.29□□□□□ -0.28
LDLR-205ENST00000557933 RMDN2Q96LZ7 410 aa13.29□□□□□ -0.28
LDLR-205ENST00000557933 EIF2AK1Q9BQI3 630 aaKnown RBP13.29□□□□□ -0.28
LDLR-205ENST00000557933 PAGR1Q9BTK6 254 aa13.29□□□□□ -0.28
LDLR-205ENST00000557933 INTS2Q9H0H0 1204 aaKnown RBP13.29□□□□□ -0.28
LDLR-205ENST00000557933 RAB17Q9H0T7 212 aa13.29□□□□□ -0.28
LDLR-205ENST00000557933 ECT2Q9H8V3 914 aa13.29□□□□□ -0.28
LDLR-205ENST00000557933 GGA1Q9UJY5 639 aa13.29□□□□□ -0.28
LDLR-205ENST00000557933 LAMB1P07942 1786 aa13.29□□□□□ -0.28
LDLR-205ENST00000557933 TMEM120BA0PK00 339 aa13.29□□□□□ -0.28
LDLR-205ENST00000557933 KRT16P08779 473 aa13.29□□□□□ -0.28
LDLR-205ENST00000557933 ODR4Q5SWX8 454 aa13.29□□□□□ -0.28
LDLR-205ENST00000557933 NAIF1Q69YI7 327 aaPredicted RBP13.29□□□□□ -0.28
LDLR-205ENST00000557933 RINT1Q6NUQ1 792 aa13.29□□□□□ -0.28
LDLR-205ENST00000557933 RPAINQ86UA6 219 aa13.29□□□□□ -0.28
LDLR-205ENST00000557933 HOOK3Q86VS8 718 aa13.29□□□□□ -0.28
LDLR-205ENST00000557933 ERICH1Q86X53 443 aa13.29□□□□□ -0.28
LDLR-205ENST00000557933 RPUSD2Q8IZ73 545 aaKnown RBP13.29□□□□□ -0.28
LDLR-205ENST00000557933 CCDC127Q96BQ5 260 aa13.29□□□□□ -0.28
LDLR-205ENST00000557933 TYW1Q9NV66 732 aaKnown RBP13.29□□□□□ -0.28
LDLR-205ENST00000557933 PFASO15067 1338 aa13.28□□□□□ -0.28
LDLR-205ENST00000557933 DDX60LQ5H9U9 1706 aaKnown RBP13.28□□□□□ -0.28
LDLR-205ENST00000557933 SGPL1O95470 568 aa13.28□□□□□ -0.28
LDLR-205ENST00000557933 PSEN1P49768 467 aa13.28□□□□□ -0.28
LDLR-205ENST00000557933 MARSP56192 900 aaKnown RBP13.28□□□□□ -0.28
LDLR-205ENST00000557933 MAP2K1Q02750 393 aaPredicted RBP13.28□□□□□ -0.28
LDLR-205ENST00000557933 SEMA3FQ13275 785 aa13.28□□□□□ -0.28
LDLR-205ENST00000557933 PPP1R18Q6NYC8 613 aa13.28□□□□□ -0.28
LDLR-205ENST00000557933 EXOC3L1Q86VI1 746 aa13.28□□□□□ -0.28
LDLR-205ENST00000557933 SYCE1Q8N0S2 351 aa13.28□□□□□ -0.28
LDLR-205ENST00000557933 CYP4X1Q8N118 509 aa13.28□□□□□ -0.28
LDLR-205ENST00000557933 ETNPPLQ8TBG4 499 aa13.28□□□□□ -0.28
LDLR-205ENST00000557933 TMEM237Q96Q45 408 aa13.28□□□□□ -0.28
LDLR-205ENST00000557933 ASIC3Q9UHC3 531 aa13.28□□□□□ -0.28
LDLR-205ENST00000557933 SCAF8Q9UPN6 1271 aaKnown RBP13.28□□□□□ -0.28
LDLR-205ENST00000557933 TRAF3IP3Q9Y228 551 aa13.28□□□□□ -0.28
LDLR-205ENST00000557933 USP20Q9Y2K6 914 aa13.28□□□□□ -0.28
LDLR-205ENST00000557933 C10orf71Q711Q0 1435 aa13.28□□□□□ -0.28
LDLR-205ENST00000557933 H0Y3Z8 333 aa13.28□□□□□ -0.28
LDLR-205ENST00000557933 O00370 1275 aa13.28□□□□□ -0.28
LDLR-205ENST00000557933 VCAM1P19320 739 aa13.28□□□□□ -0.28
LDLR-205ENST00000557933 MYL7Q01449 175 aa13.28□□□□□ -0.28
LDLR-205ENST00000557933 XRCC4Q13426 336 aa13.28□□□□□ -0.28
LDLR-205ENST00000557933 AUHQ13825 339 aaKnown RBP13.28□□□□□ -0.28
LDLR-205ENST00000557933 SLFN13Q68D06 897 aa13.28□□□□□ -0.28
LDLR-205ENST00000557933 CCDC174Q6PII3 467 aa13.28□□□□□ -0.28
LDLR-205ENST00000557933 PPM1KQ8N3J5 372 aa13.28□□□□□ -0.28
LDLR-205ENST00000557933 SYT2Q8N9I0 419 aaPredicted RBP13.28□□□□□ -0.28
LDLR-205ENST00000557933 DHX38Q92620 1227 aaKnown RBP13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms