RNA–Protein interactions for RNA: ENST00000556956.1

SLIRP-208, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 2

Gene SLIRP, Length 450 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-208ENST00000556956 TAF7Q15545 349 aaPredicted RBP3.27□□□□□ -1.89
SLIRP-208ENST00000556956 CHRNA2Q15822 529 aa3.27□□□□□ -1.89
SLIRP-208ENST00000556956 ADCK5Q3MIX3 580 aa3.27□□□□□ -1.89
SLIRP-208ENST00000556956 TTC31Q49AM3 519 aaPredicted RBP3.27□□□□□ -1.89
SLIRP-208ENST00000556956 MROH9Q5TGP6 573 aa3.27□□□□□ -1.89
SLIRP-208ENST00000556956 ICE2Q659A1 982 aa3.27□□□□□ -1.89
SLIRP-208ENST00000556956 WWC2Q6AWC2 1192 aa3.27□□□□□ -1.89
SLIRP-208ENST00000556956 GTF2IRD2BQ6EKJ0 949 aa3.27□□□□□ -1.89
SLIRP-208ENST00000556956 CC2D1AQ6P1N0 951 aaPredicted RBP3.27□□□□□ -1.89
SLIRP-208ENST00000556956 C6orf15Q6UXA7 325 aaPredicted RBP3.27□□□□□ -1.89
SLIRP-208ENST00000556956 TTLL7Q6ZT98 887 aa3.27□□□□□ -1.89
SLIRP-208ENST00000556956 C11orf57Q6ZUT1 292 aaPredicted RBP3.27□□□□□ -1.89
SLIRP-208ENST00000556956 SRLQ86TD4 932 aa3.27□□□□□ -1.89
SLIRP-208ENST00000556956 GTF2IRD2Q86UP8 949 aa3.27□□□□□ -1.89
SLIRP-208ENST00000556956 ZC3H18Q86VM9 953 aaKnown RBP3.27□□□□□ -1.89
SLIRP-208ENST00000556956 TEX2Q8IWB9 1127 aa3.27□□□□□ -1.89
SLIRP-208ENST00000556956 AOPEPQ8N6M6 819 aa3.27□□□□□ -1.89
SLIRP-208ENST00000556956 CEP112Q8N8E3 955 aa3.27□□□□□ -1.89
SLIRP-208ENST00000556956 FSIP1Q8NA03 581 aa3.27□□□□□ -1.89
SLIRP-208ENST00000556956 NEK11Q8NG66 645 aa3.27□□□□□ -1.89
SLIRP-208ENST00000556956 RABGGTAQ92696 567 aa3.27□□□□□ -1.89
SLIRP-208ENST00000556956 ERCC4Q92889 916 aaPredicted RBP3.27□□□□□ -1.89
SLIRP-208ENST00000556956 SMARCE1Q969G3 411 aa3.27□□□□□ -1.89
SLIRP-208ENST00000556956 NEK1Q96PY6 1258 aa3.27□□□□□ -1.89
SLIRP-208ENST00000556956 SDF4Q9BRK5 362 aa3.27□□□□□ -1.89
SLIRP-208ENST00000556956 MCMBPQ9BTE3 642 aa3.27□□□□□ -1.89
SLIRP-208ENST00000556956 CARD6Q9BX69 1037 aa3.27□□□□□ -1.89
SLIRP-208ENST00000556956 IL25Q9H293 177 aa3.27□□□□□ -1.89
SLIRP-208ENST00000556956 IKZF4Q9H2S9 585 aa3.27□□□□□ -1.89
SLIRP-208ENST00000556956 DEF6Q9H4E7 631 aa3.27□□□□□ -1.89
SLIRP-208ENST00000556956 GPRC5CQ9NQ84 441 aa3.27□□□□□ -1.89
SLIRP-208ENST00000556956 ST7Q9NRC1 585 aa3.27□□□□□ -1.89
SLIRP-208ENST00000556956 MIS18AQ9NYP9 233 aa3.27□□□□□ -1.89
SLIRP-208ENST00000556956 IFNKQ9P0W0 207 aa3.27□□□□□ -1.89
SLIRP-208ENST00000556956 CLEC1BQ9P126 229 aa3.27□□□□□ -1.89
SLIRP-208ENST00000556956 GULP1Q9UBP9 304 aa3.27□□□□□ -1.89
SLIRP-208ENST00000556956 RSPH14Q9UHP6 348 aa3.27□□□□□ -1.89
SLIRP-208ENST00000556956 COA3Q9Y2R0 106 aaPredicted RBP3.27□□□□□ -1.89
SLIRP-208ENST00000556956 RWDD3Q9Y3V2 267 aa3.27□□□□□ -1.89
SLIRP-208ENST00000556956 USP16Q9Y5T5 823 aa3.27□□□□□ -1.89
SLIRP-208ENST00000556956 PMF1-BGLAPU3KQ54 211 aa3.27□□□□□ -1.89
SLIRP-208ENST00000556956 FER1L4A9Z1Z3 1794 aa3.27□□□□□ -1.89
SLIRP-208ENST00000556956 PTPRMP28827 1452 aa3.27□□□□□ -1.89
SLIRP-208ENST00000556956 MLH3Q9UHC1 1453 aa3.27□□□□□ -1.89
SLIRP-208ENST00000556956 NEXMIFQ5QGS0 1516 aa3.26□□□□□ -1.89
SLIRP-208ENST00000556956 CCDC151A5D8V7 595 aa3.26□□□□□ -1.89
SLIRP-208ENST00000556956 C22orf46C9J442 243 aa3.26□□□□□ -1.89
SLIRP-208ENST00000556956 MEFVO15553 781 aaPredicted RBP3.26□□□□□ -1.89
SLIRP-208ENST00000556956 ARHGAP6O43182 974 aa3.26□□□□□ -1.89
SLIRP-208ENST00000556956 MAFKO60675 156 aa3.26□□□□□ -1.89
SLIRP-208ENST00000556956 PFKFB2O60825 505 aa3.26□□□□□ -1.89
SLIRP-208ENST00000556956 ALDH1L1O75891 902 aa3.26□□□□□ -1.89
SLIRP-208ENST00000556956 YEATS4O95619 227 aa3.26□□□□□ -1.89
SLIRP-208ENST00000556956 SERPINC1P01008 464 aa3.26□□□□□ -1.89
SLIRP-208ENST00000556956 ASGR2P07307 311 aa3.26□□□□□ -1.89
SLIRP-208ENST00000556956 SLC3A2P08195 630 aaKnown RBP3.26□□□□□ -1.89
SLIRP-208ENST00000556956 HOXB7P09629 217 aa3.26□□□□□ -1.89
SLIRP-208ENST00000556956 TOP1P11387 765 aaKnown RBP3.26□□□□□ -1.89
SLIRP-208ENST00000556956 IGFBP6P24592 240 aaPredicted RBP3.26□□□□□ -1.89
SLIRP-208ENST00000556956 MCM3P25205 808 aa3.26□□□□□ -1.89
SLIRP-208ENST00000556956 ME1P48163 572 aa3.26□□□□□ -1.89
SLIRP-208ENST00000556956 LMAN1P49257 510 aa3.26□□□□□ -1.89
SLIRP-208ENST00000556956 UBASH3AP57075 661 aa3.26□□□□□ -1.89
SLIRP-208ENST00000556956 CACNB2Q08289 660 aaPredicted RBP3.26□□□□□ -1.89
SLIRP-208ENST00000556956 STK3Q13188 491 aa3.26□□□□□ -1.89
SLIRP-208ENST00000556956 MTX1Q13505 466 aa3.26□□□□□ -1.89
SLIRP-208ENST00000556956 TOB2Q14106 344 aaPredicted RBP3.26□□□□□ -1.89
SLIRP-208ENST00000556956 MTHFSDQ2M296 383 aaKnown RBP3.26□□□□□ -1.89
SLIRP-208ENST00000556956 TBC1D10BQ4KMP7 808 aaPredicted RBP3.26□□□□□ -1.89
SLIRP-208ENST00000556956 HSP90B2PQ58FF3 399 aa3.26□□□□□ -1.89
SLIRP-208ENST00000556956 ADALQ6DHV7 355 aa3.26□□□□□ -1.89
SLIRP-208ENST00000556956 ARMCX5Q6P1M9 558 aa3.26□□□□□ -1.89
SLIRP-208ENST00000556956 FAM173BQ6P4H8 233 aa3.26□□□□□ -1.89
SLIRP-208ENST00000556956 TRIM65Q6PJ69 517 aa3.26□□□□□ -1.89
SLIRP-208ENST00000556956 OLFM4Q6UX06 510 aa3.26□□□□□ -1.89
SLIRP-208ENST00000556956 Q6ZUG5 572 aa3.26□□□□□ -1.89
SLIRP-208ENST00000556956 DPH6Q7L8W6 267 aa3.26□□□□□ -1.89
SLIRP-208ENST00000556956 B3GNT8Q7Z7M8 397 aa3.26□□□□□ -1.89
SLIRP-208ENST00000556956 TICAM2Q86XR7 235 aa3.26□□□□□ -1.89
SLIRP-208ENST00000556956 C10orf67Q8IYJ2 551 aa3.26□□□□□ -1.89
SLIRP-208ENST00000556956 ZNF513Q8N8E2 541 aaPredicted RBP3.26□□□□□ -1.89
SLIRP-208ENST00000556956 ENGASEQ8NFI3 743 aa3.26□□□□□ -1.89
SLIRP-208ENST00000556956 SMARCC2Q8TAQ2 1214 aa3.26□□□□□ -1.89
SLIRP-208ENST00000556956 KCNG4Q8TDN1 519 aa3.26□□□□□ -1.89
SLIRP-208ENST00000556956 HNRNPLLQ8WVV9 542 aaKnown RBP3.26□□□□□ -1.89
SLIRP-208ENST00000556956 DNAAF4Q8WXU2 420 aa3.26□□□□□ -1.89
SLIRP-208ENST00000556956 PPM1EQ8WY54 764 aa3.26□□□□□ -1.89
SLIRP-208ENST00000556956 SEC14L1Q92503 715 aa3.26□□□□□ -1.89
SLIRP-208ENST00000556956 MRPS27Q92552 414 aaKnown RBP3.26□□□□□ -1.89
SLIRP-208ENST00000556956 DIO2Q92813 273 aa3.26□□□□□ -1.89
SLIRP-208ENST00000556956 TRMT2BQ96GJ1 504 aaKnown RBP3.26□□□□□ -1.89
SLIRP-208ENST00000556956 TMEM169Q96HH4 297 aa3.26□□□□□ -1.89
SLIRP-208ENST00000556956 MRGPRX3Q96LB0 322 aa3.26□□□□□ -1.89
SLIRP-208ENST00000556956 CEP89Q96ST8 783 aa3.26□□□□□ -1.89
SLIRP-208ENST00000556956 MYCBPQ99417 103 aaPredicted RBP3.26□□□□□ -1.89
SLIRP-208ENST00000556956 MTA3Q9BTC8 594 aa3.26□□□□□ -1.89
SLIRP-208ENST00000556956 SSBP3Q9BWW4 388 aaPredicted RBP3.26□□□□□ -1.89
SLIRP-208ENST00000556956 PARD6BQ9BYG5 372 aa3.26□□□□□ -1.89
SLIRP-208ENST00000556956 XPO4Q9C0E2 1151 aaKnown RBP3.26□□□□□ -1.89
SLIRP-208ENST00000556956 TMX1Q9H3N1 280 aa3.26□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms