RNA–Protein interactions for RNA: ENST00000556768.5

SCFD1-222, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,829 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-222ENST00000556768 PRRC2BQ5JSZ5 2229 aaKnown RBP8.17□□□□□ -1.1
SCFD1-222ENST00000556768 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP8.16□□□□□ -1.1
SCFD1-222ENST00000556768 TMEM150BA6NC51 233 aa8.16□□□□□ -1.1
SCFD1-222ENST00000556768 GRM6O15303 877 aa8.16□□□□□ -1.1
SCFD1-222ENST00000556768 CSDE1O75534 798 aaKnown RBP8.16□□□□□ -1.1
SCFD1-222ENST00000556768 DGAT1O75907 488 aa8.16□□□□□ -1.1
SCFD1-222ENST00000556768 XRCC6P12956 609 aaKnown RBP eCLIP8.16□□□□□ -1.1
SCFD1-222ENST00000556768 LAG3P18627 525 aa8.16□□□□□ -1.1
SCFD1-222ENST00000556768 PPM1AP35813 382 aa8.16□□□□□ -1.1
SCFD1-222ENST00000556768 TRAPPC10P48553 1259 aa8.16□□□□□ -1.1
SCFD1-222ENST00000556768 MCM2P49736 904 aa8.16□□□□□ -1.1
SCFD1-222ENST00000556768 RAB27AP51159 221 aa8.16□□□□□ -1.1
SCFD1-222ENST00000556768 PCBP1Q15365 356 aaKnown RBP eCLIP8.16□□□□□ -1.1
SCFD1-222ENST00000556768 C8orf34Q49A92 452 aa8.16□□□□□ -1.1
SCFD1-222ENST00000556768 TCEAL5Q5H9L2 206 aa8.16□□□□□ -1.1
SCFD1-222ENST00000556768 PDE12Q6L8Q7 609 aaKnown RBP8.16□□□□□ -1.1
SCFD1-222ENST00000556768 SRGAP1Q7Z6B7 1085 aa8.16□□□□□ -1.1
SCFD1-222ENST00000556768 ECHDC2Q86YB7 292 aa8.16□□□□□ -1.1
SCFD1-222ENST00000556768 LRRC43Q8N309 656 aa8.16□□□□□ -1.1
SCFD1-222ENST00000556768 TMEM87AQ8NBN3 555 aa8.16□□□□□ -1.1
SCFD1-222ENST00000556768 TNFRSF25Q93038 417 aa8.16□□□□□ -1.1
SCFD1-222ENST00000556768 PGBD4Q96DM1 585 aa8.16□□□□□ -1.1
SCFD1-222ENST00000556768 MTRQ99707 1265 aa8.16□□□□□ -1.1
SCFD1-222ENST00000556768 HSD17B14Q9BPX1 270 aa8.16□□□□□ -1.1
SCFD1-222ENST00000556768 MRPL9Q9BYD2 267 aaKnown RBP8.16□□□□□ -1.1
SCFD1-222ENST00000556768 IGFLR1Q9H665 355 aa8.16□□□□□ -1.1
SCFD1-222ENST00000556768 DHX33Q9H6R0 707 aaKnown RBP8.16□□□□□ -1.1
SCFD1-222ENST00000556768 ANKEF1Q9NU02 776 aa8.16□□□□□ -1.1
SCFD1-222ENST00000556768 CLDND1Q9NY35 253 aa8.16□□□□□ -1.1
SCFD1-222ENST00000556768 ATP9BO43861 1147 aa8.15□□□□□ -1.1
SCFD1-222ENST00000556768 ERLIN2O94905 339 aa8.15□□□□□ -1.1
SCFD1-222ENST00000556768 CSPG5O95196 566 aa8.15□□□□□ -1.1
SCFD1-222ENST00000556768 STBD1O95210 358 aa8.15□□□□□ -1.1
SCFD1-222ENST00000556768 FGFR1P11362 822 aa8.15□□□□□ -1.1
SCFD1-222ENST00000556768 PHKA2P46019 1235 aa8.15□□□□□ -1.1
SCFD1-222ENST00000556768 RNASELQ05823 741 aaKnown RBP8.15□□□□□ -1.1
SCFD1-222ENST00000556768 LAMTOR4Q0VGL1 99 aa8.15□□□□□ -1.1
SCFD1-222ENST00000556768 DRP2Q13474 957 aa8.15□□□□□ -1.1
SCFD1-222ENST00000556768 DSC3Q14574 896 aa8.15□□□□□ -1.1
SCFD1-222ENST00000556768 LEXMQ3ZCV2 418 aa8.15□□□□□ -1.1
SCFD1-222ENST00000556768 GLB1LQ6UWU2 654 aa8.15□□□□□ -1.1
SCFD1-222ENST00000556768 NOSTRINQ8IVI9 506 aa8.15□□□□□ -1.1
SCFD1-222ENST00000556768 RNF149Q8NC42 400 aa8.15□□□□□ -1.1
SCFD1-222ENST00000556768 SPPL3Q8TCT6 385 aa8.15□□□□□ -1.1
SCFD1-222ENST00000556768 POF1BQ8WVV4 589 aa8.15□□□□□ -1.1
SCFD1-222ENST00000556768 TMEM143Q96AN5 459 aa8.15□□□□□ -1.1
SCFD1-222ENST00000556768 MTMR9Q96QG7 549 aa8.15□□□□□ -1.1
SCFD1-222ENST00000556768 NACC1Q96RE7 527 aa8.15□□□□□ -1.1
SCFD1-222ENST00000556768 KAT6AQ92794 2004 aa8.15□□□□□ -1.11
SCFD1-222ENST00000556768 FAM205CA6NFA0 338 aa8.15□□□□□ -1.11
SCFD1-222ENST00000556768 H3BQV1 296 aa8.15□□□□□ -1.11
SCFD1-222ENST00000556768 RBAK-RBAKDNI3L0D1 243 aa8.15□□□□□ -1.11
SCFD1-222ENST00000556768 FGF18O76093 207 aa8.15□□□□□ -1.11
SCFD1-222ENST00000556768 LYPLA2O95372 231 aa8.15□□□□□ -1.11
SCFD1-222ENST00000556768 ITGB1P05556 798 aa8.15□□□□□ -1.11
SCFD1-222ENST00000556768 SRGAP2BP0DMP2 458 aa8.15□□□□□ -1.11
SCFD1-222ENST00000556768 FGFR4P22455 802 aa8.15□□□□□ -1.11
SCFD1-222ENST00000556768 TECP42680 631 aa8.15□□□□□ -1.11
SCFD1-222ENST00000556768 GATMP50440 423 aa8.15□□□□□ -1.11
SCFD1-222ENST00000556768 SPIRE1Q08AE8 756 aa8.15□□□□□ -1.11
SCFD1-222ENST00000556768 ELOAQ14241 798 aaKnown RBP8.15□□□□□ -1.11
SCFD1-222ENST00000556768 EMC2Q15006 297 aa8.15□□□□□ -1.11
SCFD1-222ENST00000556768 NR6A1Q15406 480 aa8.15□□□□□ -1.11
SCFD1-222ENST00000556768 HAUS3Q68CZ6 603 aa8.15□□□□□ -1.11
SCFD1-222ENST00000556768 MCTP1Q6DN14 999 aa8.15□□□□□ -1.11
SCFD1-222ENST00000556768 PTCRAQ6ISU1 281 aaPredicted RBP8.15□□□□□ -1.11
SCFD1-222ENST00000556768 KSR1Q8IVT5 923 aa8.15□□□□□ -1.11
SCFD1-222ENST00000556768 HACE1Q8IYU2 909 aa8.15□□□□□ -1.11
SCFD1-222ENST00000556768 ZNF558Q96NG5 402 aa8.15□□□□□ -1.11
SCFD1-222ENST00000556768 CEP89Q96ST8 783 aa8.15□□□□□ -1.11
SCFD1-222ENST00000556768 TLE6Q9H808 572 aa8.15□□□□□ -1.11
SCFD1-222ENST00000556768 NGRNQ9NPE2 291 aaKnown RBP8.15□□□□□ -1.11
SCFD1-222ENST00000556768 TLR9Q9NR96 1032 aa8.15□□□□□ -1.11
SCFD1-222ENST00000556768 H3BQ06 376 aaPredicted RBP8.14□□□□□ -1.11
SCFD1-222ENST00000556768 OR52Z1P0C646 297 aa8.14□□□□□ -1.11
SCFD1-222ENST00000556768 LINC00271P0C7V0 271 aa8.14□□□□□ -1.11
SCFD1-222ENST00000556768 NDUFV1P49821 464 aa8.14□□□□□ -1.11
SCFD1-222ENST00000556768 ZNF174Q15697 407 aa8.14□□□□□ -1.11
SCFD1-222ENST00000556768 PROX2Q3B8N5 592 aa8.14□□□□□ -1.11
SCFD1-222ENST00000556768 TTC38Q5R3I4 469 aa8.14□□□□□ -1.11
SCFD1-222ENST00000556768 KCNT2Q6UVM3 1135 aa8.14□□□□□ -1.11
SCFD1-222ENST00000556768 TMC7Q7Z402 723 aa8.14□□□□□ -1.11
SCFD1-222ENST00000556768 FERMT3Q86UX7 667 aa8.14□□□□□ -1.11
SCFD1-222ENST00000556768 CNNM3Q8NE01 707 aa8.14□□□□□ -1.11
SCFD1-222ENST00000556768 MCPH1Q8NEM0 835 aa8.14□□□□□ -1.11
SCFD1-222ENST00000556768 URGCPQ8TCY9 931 aa8.14□□□□□ -1.11
SCFD1-222ENST00000556768 PIGOQ8TEQ8 1089 aa8.14□□□□□ -1.11
SCFD1-222ENST00000556768 CASD1Q96PB1 797 aa8.14□□□□□ -1.11
SCFD1-222ENST00000556768 FAM193BQ96PV7 902 aaPredicted RBP8.14□□□□□ -1.11
SCFD1-222ENST00000556768 TRIM6Q9C030 488 aaPredicted RBP8.14□□□□□ -1.11
SCFD1-222ENST00000556768 IFT122Q9HBG6 1241 aa8.14□□□□□ -1.11
SCFD1-222ENST00000556768 TUFT1Q9NNX1 390 aa8.14□□□□□ -1.11
SCFD1-222ENST00000556768 UBN1Q9NPG3 1134 aa8.14□□□□□ -1.11
SCFD1-222ENST00000556768 ENTPD7Q9NQZ7 604 aa8.14□□□□□ -1.11
SCFD1-222ENST00000556768 FAM105AQ9NUU6 356 aa8.14□□□□□ -1.11
SCFD1-222ENST00000556768 SPG21Q9NZD8 308 aa8.14□□□□□ -1.11
SCFD1-222ENST00000556768 KANSL3Q9P2N6 904 aa8.14□□□□□ -1.11
SCFD1-222ENST00000556768 WRAP73Q9P2S5 460 aaPredicted RBP8.14□□□□□ -1.11
SCFD1-222ENST00000556768 STK39Q9UEW8 545 aa8.14□□□□□ -1.11
SCFD1-222ENST00000556768 LZTS1Q9Y250 596 aa8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 99.1 ms