RNA–Protein interactions for RNA: ENST00000555995.1

CCDC88C-210, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 689 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-210ENST00000555995 LZTS1Q9Y250 596 aa22.82■■□□□ 1.24
CCDC88C-210ENST00000555995 ZMYM2Q9UBW7 1377 aa22.81■■□□□ 1.24
CCDC88C-210ENST00000555995 FSD2A1L4K1 749 aa22.81■■□□□ 1.24
CCDC88C-210ENST00000555995 ITGB1P05556 798 aa22.81■■□□□ 1.24
CCDC88C-210ENST00000555995 AMHR2Q16671 573 aa22.81■■□□□ 1.24
CCDC88C-210ENST00000555995 TJAP1Q5JTD0 557 aa22.81■■□□□ 1.24
CCDC88C-210ENST00000555995 PDE12Q6L8Q7 609 aaKnown RBP22.81■■□□□ 1.24
CCDC88C-210ENST00000555995 SLC27A1Q6PCB7 646 aa22.81■■□□□ 1.24
CCDC88C-210ENST00000555995 RASSF8Q8NHQ8 419 aa22.81■■□□□ 1.24
CCDC88C-210ENST00000555995 RSAD1Q9HA92 442 aa22.81■■□□□ 1.24
CCDC88C-210ENST00000555995 KANSL3Q9P2N6 904 aa22.81■■□□□ 1.24
CCDC88C-210ENST00000555995 PUF60Q9UHX1 559 aaKnown RBP22.81■■□□□ 1.24
CCDC88C-210ENST00000555995 MORC2Q9Y6X9 1032 aaPredicted RBP22.81■■□□□ 1.24
CCDC88C-210ENST00000555995 EYSQ5T1H1 3165 aa22.81■■□□□ 1.24
CCDC88C-210ENST00000555995 MYH11P35749 1972 aa22.81■■□□□ 1.24
CCDC88C-210ENST00000555995 ARF4P18085 180 aaPredicted RBP22.8■■□□□ 1.24
CCDC88C-210ENST00000555995 GUCY2CP25092 1073 aa22.8■■□□□ 1.24
CCDC88C-210ENST00000555995 DMP1Q13316 513 aaPredicted RBP22.8■■□□□ 1.24
CCDC88C-210ENST00000555995 TMEM119Q4V9L6 283 aa22.8■■□□□ 1.24
CCDC88C-210ENST00000555995 NOMO2Q5JPE7 1267 aa22.8■■□□□ 1.24
CCDC88C-210ENST00000555995 APBB1IPQ7Z5R6 666 aaPredicted RBP22.8■■□□□ 1.24
CCDC88C-210ENST00000555995 SPPL3Q8TCT6 385 aa22.8■■□□□ 1.24
CCDC88C-210ENST00000555995 ALG13Q9NP73 1137 aaKnown RBP22.8■■□□□ 1.24
CCDC88C-210ENST00000555995 N4BP3O15049 544 aa22.79■■□□□ 1.24
CCDC88C-210ENST00000555995 FGF18O76093 207 aa22.79■■□□□ 1.24
CCDC88C-210ENST00000555995 ITGA4P13612 1032 aa22.79■■□□□ 1.24
CCDC88C-210ENST00000555995 TXLNAP40222 546 aa22.79■■□□□ 1.24
CCDC88C-210ENST00000555995 ALDH7A1P49419 539 aaKnown RBP22.79■■□□□ 1.24
CCDC88C-210ENST00000555995 PLCB3Q01970 1234 aa22.79■■□□□ 1.24
CCDC88C-210ENST00000555995 KRT17Q04695 432 aa22.79■■□□□ 1.24
CCDC88C-210ENST00000555995 RNASELQ05823 741 aaKnown RBP22.79■■□□□ 1.24
CCDC88C-210ENST00000555995 TMEM132AQ24JP5 1023 aa22.79■■□□□ 1.24
CCDC88C-210ENST00000555995 UBXN11Q5T124 520 aa22.79■■□□□ 1.24
CCDC88C-210ENST00000555995 RINT1Q6NUQ1 792 aa22.79■■□□□ 1.24
CCDC88C-210ENST00000555995 KCNT2Q6UVM3 1135 aa22.79■■□□□ 1.24
CCDC88C-210ENST00000555995 SYT2Q8N9I0 419 aaPredicted RBP22.79■■□□□ 1.24
CCDC88C-210ENST00000555995 POF1BQ8WVV4 589 aa22.79■■□□□ 1.24
CCDC88C-210ENST00000555995 ADPGKQ9BRR6 497 aa22.79■■□□□ 1.24
CCDC88C-210ENST00000555995 FZD8Q9H461 694 aa22.79■■□□□ 1.24
CCDC88C-210ENST00000555995 PRDM6Q9NQX0 595 aa22.79■■□□□ 1.24
CCDC88C-210ENST00000555995 STK39Q9UEW8 545 aa22.79■■□□□ 1.24
CCDC88C-210ENST00000555995 A0A1B0GUA9 196 aa22.78■■□□□ 1.24
CCDC88C-210ENST00000555995 SSBP05455 408 aaKnown RBP eCLIP22.78■■□□□ 1.24
CCDC88C-210ENST00000555995 PRKCBP05771 671 aa22.78■■□□□ 1.24
CCDC88C-210ENST00000555995 PRPF4BQ13523 1007 aaKnown RBP22.78■■□□□ 1.24
CCDC88C-210ENST00000555995 LRRC55Q6ZSA7 311 aa22.78■■□□□ 1.24
CCDC88C-210ENST00000555995 BSNDQ8WZ55 320 aa22.78■■□□□ 1.24
CCDC88C-210ENST00000555995 LPPQ93052 612 aa22.78■■□□□ 1.24
CCDC88C-210ENST00000555995 CPB2Q96IY4 423 aa22.78■■□□□ 1.24
CCDC88C-210ENST00000555995 PNMA5Q96PV4 448 aa22.78■■□□□ 1.24
CCDC88C-210ENST00000555995 ASB2Q96Q27 587 aa22.78■■□□□ 1.24
CCDC88C-210ENST00000555995 TLR9Q9NR96 1032 aa22.78■■□□□ 1.24
CCDC88C-210ENST00000555995 SPG21Q9NZD8 308 aa22.78■■□□□ 1.24
CCDC88C-210ENST00000555995 INPP5FQ9Y2H2 1132 aa22.78■■□□□ 1.24
CCDC88C-210ENST00000555995 RBM19Q9Y4C8 960 aaKnown RBP22.78■■□□□ 1.24
CCDC88C-210ENST00000555995 IPPQ9Y573 584 aa22.78■■□□□ 1.24
CCDC88C-210ENST00000555995 ACKR2O00590 384 aa22.77■■□□□ 1.24
CCDC88C-210ENST00000555995 HIP1RO75146 1068 aa22.77■■□□□ 1.24
CCDC88C-210ENST00000555995 OFD1O75665 1012 aa22.77■■□□□ 1.24
CCDC88C-210ENST00000555995 BMS1Q14692 1282 aaKnown RBP22.77■■□□□ 1.24
CCDC88C-210ENST00000555995 PTPAQ15257 358 aa22.77■■□□□ 1.24
CCDC88C-210ENST00000555995 TCEAL5Q5H9L2 206 aa22.77■■□□□ 1.24
CCDC88C-210ENST00000555995 C1orf186Q6ZWK4 172 aa22.77■■□□□ 1.24
CCDC88C-210ENST00000555995 KCNK18Q7Z418 384 aa22.77■■□□□ 1.24
CCDC88C-210ENST00000555995 MRPS27Q92552 414 aaKnown RBP22.77■■□□□ 1.24
CCDC88C-210ENST00000555995 ZNF396Q96N95 335 aaPredicted RBP22.77■■□□□ 1.24
CCDC88C-210ENST00000555995 CCSER1Q9C0I3 900 aa22.77■■□□□ 1.24
CCDC88C-210ENST00000555995 CCDC113Q9H0I3 377 aa22.77■■□□□ 1.24
CCDC88C-210ENST00000555995 UBE2ZQ9H832 354 aaPredicted RBP22.77■■□□□ 1.24
CCDC88C-210ENST00000555995 TBC1D13Q9NVG8 400 aa22.77■■□□□ 1.24
CCDC88C-210ENST00000555995 GIT1Q9Y2X7 761 aa22.77■■□□□ 1.24
CCDC88C-210ENST00000555995 CLIC4Q9Y696 253 aa22.77■■□□□ 1.24
CCDC88C-210ENST00000555995 PRUNE2Q8WUY3 3088 aa22.76■■□□□ 1.23
CCDC88C-210ENST00000555995 PLA2G4BP0C869 781 aa22.76■■□□□ 1.23
CCDC88C-210ENST00000555995 SMTNP53814 917 aa22.76■■□□□ 1.23
CCDC88C-210ENST00000555995 AGMOQ6ZNB7 445 aa22.76■■□□□ 1.23
CCDC88C-210ENST00000555995 SMG8Q8ND04 991 aaKnown RBP22.76■■□□□ 1.23
CCDC88C-210ENST00000555995 FAM193BQ96PV7 902 aaPredicted RBP22.76■■□□□ 1.23
CCDC88C-210ENST00000555995 RUSC1Q9BVN2 902 aa22.76■■□□□ 1.23
CCDC88C-210ENST00000555995 EIF2AQ9BY44 585 aaKnown RBP22.76■■□□□ 1.23
CCDC88C-210ENST00000555995 CCDC39Q9UFE4 941 aa22.76■■□□□ 1.23
CCDC88C-210ENST00000555995 SRPRBQ9Y5M8 271 aaKnown RBP22.76■■□□□ 1.23
CCDC88C-210ENST00000555995 TDRD15B5MCY1 1934 aaKnown RBP22.76■■□□□ 1.23
CCDC88C-210ENST00000555995 CCDC169A6NNP5 214 aa22.75■■□□□ 1.23
CCDC88C-210ENST00000555995 H0YCG3 227 aa22.75■■□□□ 1.23
CCDC88C-210ENST00000555995 K7ERI5 159 aa22.75■■□□□ 1.23
CCDC88C-210ENST00000555995 INPPL1O15357 1258 aa22.75■■□□□ 1.23
CCDC88C-210ENST00000555995 B4GALT5O43286 388 aa22.75■■□□□ 1.23
CCDC88C-210ENST00000555995 ZC3H11AO75152 810 aaKnown RBP eCLIP22.75■■□□□ 1.23
CCDC88C-210ENST00000555995 SCP2P22307 547 aa22.75■■□□□ 1.23
CCDC88C-210ENST00000555995 SLC12A3P55017 1021 aa22.75■■□□□ 1.23
CCDC88C-210ENST00000555995 PEX3P56589 373 aa22.75■■□□□ 1.23
CCDC88C-210ENST00000555995 BCAR1P56945 870 aa22.75■■□□□ 1.23
CCDC88C-210ENST00000555995 DCAF4L1Q3SXM0 396 aa22.75■■□□□ 1.23
CCDC88C-210ENST00000555995 SLC39A11Q8N1S5 342 aa22.75■■□□□ 1.23
CCDC88C-210ENST00000555995 PABPC5Q96DU9 382 aaKnown RBP22.75■■□□□ 1.23
CCDC88C-210ENST00000555995 TMEM169Q96HH4 297 aa22.75■■□□□ 1.23
CCDC88C-210ENST00000555995 TMEM134Q9H6X4 195 aa22.75■■□□□ 1.23
CCDC88C-210ENST00000555995 KMT5AQ9NQR1 393 aa22.75■■□□□ 1.23
CCDC88C-210ENST00000555995 LARSQ9P2J5 1176 aaKnown RBP22.75■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms