RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 CD38P28907 300 aa5.57□□□□□ -1.52
SCFD1-216ENST00000555550 FNTBP49356 437 aa5.57□□□□□ -1.52
SCFD1-216ENST00000555550 MECP2P51608 486 aaKnown RBP5.57□□□□□ -1.52
SCFD1-216ENST00000555550 NEK4P51957 841 aa5.57□□□□□ -1.52
SCFD1-216ENST00000555550 CDCA2Q69YH5 1023 aaPredicted RBP5.57□□□□□ -1.52
SCFD1-216ENST00000555550 Q6YL49 198 aa5.57□□□□□ -1.52
SCFD1-216ENST00000555550 APBB1IPQ7Z5R6 666 aaPredicted RBP5.57□□□□□ -1.52
SCFD1-216ENST00000555550 BMP8AQ7Z5Y6 402 aa5.57□□□□□ -1.52
SCFD1-216ENST00000555550 WDR11Q9BZH6 1224 aa5.57□□□□□ -1.52
SCFD1-216ENST00000555550 KCNH6Q9H252 994 aa5.57□□□□□ -1.52
SCFD1-216ENST00000555550 EPC1Q9H2F5 836 aa5.57□□□□□ -1.52
SCFD1-216ENST00000555550 SERHL2Q9H4I8 314 aa5.57□□□□□ -1.52
SCFD1-216ENST00000555550 PRDM13Q9H4Q3 707 aa5.57□□□□□ -1.52
SCFD1-216ENST00000555550 C14orf93Q9H972 538 aaKnown RBP5.57□□□□□ -1.52
SCFD1-216ENST00000555550 ING3Q9NXR8 418 aa5.57□□□□□ -1.52
SCFD1-216ENST00000555550 RFPL3O75679 317 aa5.56□□□□□ -1.52
SCFD1-216ENST00000555550 PTX3P26022 381 aaPredicted RBP5.56□□□□□ -1.52
SCFD1-216ENST00000555550 KRTAP10-11P60412 298 aa5.56□□□□□ -1.52
SCFD1-216ENST00000555550 DCAF17Q5H9S7 520 aaPredicted RBP5.56□□□□□ -1.52
SCFD1-216ENST00000555550 RD3Q7Z3Z2 195 aa5.56□□□□□ -1.52
SCFD1-216ENST00000555550 KIAA1958Q8N8K9 716 aa5.56□□□□□ -1.52
SCFD1-216ENST00000555550 R3HDMLQ9H3Y0 253 aa5.56□□□□□ -1.52
SCFD1-216ENST00000555550 ACSS2Q9NR19 701 aa5.56□□□□□ -1.52
SCFD1-216ENST00000555550 USP35Q9P2H5 1018 aa5.56□□□□□ -1.52
SCFD1-216ENST00000555550 ZKSCAN5Q9Y2L8 839 aa5.56□□□□□ -1.52
SCFD1-216ENST00000555550 KPNA6O60684 536 aa5.55□□□□□ -1.52
SCFD1-216ENST00000555550 PPFIA4O75335 1185 aa5.55□□□□□ -1.52
SCFD1-216ENST00000555550 CDC45O75419 566 aa5.55□□□□□ -1.52
SCFD1-216ENST00000555550 GYPEP15421 78 aa5.55□□□□□ -1.52
SCFD1-216ENST00000555550 PTH2RP49190 550 aa5.55□□□□□ -1.52
SCFD1-216ENST00000555550 USP14P54578 494 aa5.55□□□□□ -1.52
SCFD1-216ENST00000555550 MYBPC3Q14896 1274 aa5.55□□□□□ -1.52
SCFD1-216ENST00000555550 CNNM4Q6P4Q7 775 aa5.55□□□□□ -1.52
SCFD1-216ENST00000555550 C16orf86Q6ZW13 317 aa5.55□□□□□ -1.52
SCFD1-216ENST00000555550 CMTR2Q8IYT2 770 aaKnown RBP5.55□□□□□ -1.52
SCFD1-216ENST00000555550 SUPT20HQ8NEM7 779 aa5.55□□□□□ -1.52
SCFD1-216ENST00000555550 MYEOVQ96EZ4 313 aa5.55□□□□□ -1.52
SCFD1-216ENST00000555550 C16orf92Q96LL3 132 aa5.55□□□□□ -1.52
SCFD1-216ENST00000555550 UIMC1Q96RL1 719 aa5.55□□□□□ -1.52
SCFD1-216ENST00000555550 CPEB1Q9BZB8 566 aaKnown RBP5.55□□□□□ -1.52
SCFD1-216ENST00000555550 HAPLN2Q9GZV7 340 aa5.55□□□□□ -1.52
SCFD1-216ENST00000555550 RSAD1Q9HA92 442 aa5.55□□□□□ -1.52
SCFD1-216ENST00000555550 B4GALT6Q9UBX8 382 aa5.55□□□□□ -1.52
SCFD1-216ENST00000555550 MRPL42Q9Y6G3 142 aaKnown RBP5.55□□□□□ -1.52
SCFD1-216ENST00000555550 ARHGEF17Q96PE2 2063 aaPredicted RBP5.54□□□□□ -1.52
SCFD1-216ENST00000555550 A0A0A6YYK5 440 aaPredicted RBP5.54□□□□□ -1.52
SCFD1-216ENST00000555550 CBX4O00257 560 aa5.54□□□□□ -1.52
SCFD1-216ENST00000555550 TRIM24O15164 1050 aa5.54□□□□□ -1.52
SCFD1-216ENST00000555550 GAS7O60861 476 aa5.54□□□□□ -1.52
SCFD1-216ENST00000555550 APOL3O95236 402 aa5.54□□□□□ -1.52
SCFD1-216ENST00000555550 CYP17A1P05093 508 aa5.54□□□□□ -1.52
SCFD1-216ENST00000555550 APOBEC3AP31941 199 aaPredicted RBP5.54□□□□□ -1.52
SCFD1-216ENST00000555550 BCAR1P56945 870 aa5.54□□□□□ -1.52
SCFD1-216ENST00000555550 TAP1Q03518 808 aa5.54□□□□□ -1.52
SCFD1-216ENST00000555550 FBXO42Q6P3S6 717 aa5.54□□□□□ -1.52
SCFD1-216ENST00000555550 UNQ6494/PRO21346Q6UXR6 183 aa5.54□□□□□ -1.52
SCFD1-216ENST00000555550 LCORLQ8N3X6 602 aa5.54□□□□□ -1.52
SCFD1-216ENST00000555550 LILRA3Q8N6C8 439 aaPredicted RBP5.54□□□□□ -1.52
SCFD1-216ENST00000555550 RPGRQ92834 1020 aaKnown RBP5.54□□□□□ -1.52
SCFD1-216ENST00000555550 SOX7Q9BT81 388 aa5.54□□□□□ -1.52
SCFD1-216ENST00000555550 INTS7Q9NVH2 962 aaKnown RBP5.54□□□□□ -1.52
SCFD1-216ENST00000555550 IFT57Q9NWB7 429 aa5.54□□□□□ -1.52
SCFD1-216ENST00000555550 TRPM5Q9NZQ8 1165 aa5.54□□□□□ -1.52
SCFD1-216ENST00000555550 SYNPO2Q9UMS6 1093 aa5.54□□□□□ -1.52
SCFD1-216ENST00000555550 COX11Q9Y6N1 276 aa5.54□□□□□ -1.52
SCFD1-216ENST00000555550 SPATA31A6Q5VVP1 1343 aa5.53□□□□□ -1.52
SCFD1-216ENST00000555550 NDUFA10O95299 355 aa5.53□□□□□ -1.52
SCFD1-216ENST00000555550 SLC9A1P19634 815 aa5.53□□□□□ -1.52
SCFD1-216ENST00000555550 CASRP41180 1078 aa5.53□□□□□ -1.52
SCFD1-216ENST00000555550 TKFCQ3LXA3 575 aa5.53□□□□□ -1.52
SCFD1-216ENST00000555550 DHX37Q8IY37 1157 aaKnown RBP5.53□□□□□ -1.52
SCFD1-216ENST00000555550 OR5M3Q8NGP4 307 aa5.53□□□□□ -1.52
SCFD1-216ENST00000555550 NINJ1Q92982 152 aa5.53□□□□□ -1.52
SCFD1-216ENST00000555550 NDC1Q9BTX1 674 aa5.53□□□□□ -1.52
SCFD1-216ENST00000555550 ENKD1Q9H0I2 346 aa5.53□□□□□ -1.52
SCFD1-216ENST00000555550 MTG2Q9H4K7 406 aa5.53□□□□□ -1.52
SCFD1-216ENST00000555550 TOMM22Q9NS69 142 aa5.53□□□□□ -1.52
SCFD1-216ENST00000555550 EPN1Q9Y6I3 576 aaPredicted RBP5.53□□□□□ -1.52
SCFD1-216ENST00000555550 A0A0A6YYJ9 748 aa5.52□□□□□ -1.53
SCFD1-216ENST00000555550 TMEM200CA6NKL6 621 aa5.52□□□□□ -1.53
SCFD1-216ENST00000555550 MTSS1O43312 755 aa5.52□□□□□ -1.53
SCFD1-216ENST00000555550 DNAJC6O75061 913 aa5.52□□□□□ -1.53
SCFD1-216ENST00000555550 NCR1O76036 304 aa5.52□□□□□ -1.53
SCFD1-216ENST00000555550 PLA2G5P39877 138 aa5.52□□□□□ -1.53
SCFD1-216ENST00000555550 ADCY2Q08462 1091 aa5.52□□□□□ -1.53
SCFD1-216ENST00000555550 SART3Q15020 963 aaKnown RBP5.52□□□□□ -1.53
SCFD1-216ENST00000555550 VPS72Q15906 364 aa5.52□□□□□ -1.53
SCFD1-216ENST00000555550 CCDC62Q6P9F0 684 aa5.52□□□□□ -1.53
SCFD1-216ENST00000555550 LRRTM3Q86VH5 581 aa5.52□□□□□ -1.53
SCFD1-216ENST00000555550 JAZF1Q86VZ6 243 aa5.52□□□□□ -1.53
SCFD1-216ENST00000555550 NME9Q86XW9 330 aa5.52□□□□□ -1.53
SCFD1-216ENST00000555550 NIM1KQ8IY84 436 aa5.52□□□□□ -1.53
SCFD1-216ENST00000555550 NXPE1Q8N323 547 aa5.52□□□□□ -1.53
SCFD1-216ENST00000555550 OR52N2Q8NGI0 321 aa5.52□□□□□ -1.53
SCFD1-216ENST00000555550 LSM14BQ9BX40 385 aaKnown RBP5.52□□□□□ -1.53
SCFD1-216ENST00000555550 SLC46A2Q9BY10 475 aa5.52□□□□□ -1.53
SCFD1-216ENST00000555550 WDR3Q9UNX4 943 aaKnown RBP eCLIP5.52□□□□□ -1.53
SCFD1-216ENST00000555550 LEFTY2O00292 366 aa5.51□□□□□ -1.53
SCFD1-216ENST00000555550 GAAP10253 952 aa5.51□□□□□ -1.53
SCFD1-216ENST00000555550 FAM83AQ86UY5 434 aa5.51□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms