RNA–Protein interactions for RNA: ENST00000555259.5

SCFD1-215, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,553 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-215ENST00000555259 AP3B2Q13367 1082 aa10.89□□□□□ -0.67
SCFD1-215ENST00000555259 DRP2Q13474 957 aa10.89□□□□□ -0.67
SCFD1-215ENST00000555259 UBXN2BQ14CS0 331 aa10.89□□□□□ -0.67
SCFD1-215ENST00000555259 CASC1Q6TDU7 716 aa10.89□□□□□ -0.67
SCFD1-215ENST00000555259 RAB11FIP4Q86YS3 637 aa10.89□□□□□ -0.67
SCFD1-215ENST00000555259 SMC5Q8IY18 1101 aa10.89□□□□□ -0.67
SCFD1-215ENST00000555259 FGF14Q92915 247 aa10.89□□□□□ -0.67
SCFD1-215ENST00000555259 TMEM175Q9BSA9 504 aa10.89□□□□□ -0.67
SCFD1-215ENST00000555259 ZNF577Q9BSK1 485 aa10.89□□□□□ -0.67
SCFD1-215ENST00000555259 MTA3Q9BTC8 594 aa10.89□□□□□ -0.67
SCFD1-215ENST00000555259 HERC2P3Q9BVR0 1158 aa10.89□□□□□ -0.67
SCFD1-215ENST00000555259 OSBPL6Q9BZF3 934 aa10.89□□□□□ -0.67
SCFD1-215ENST00000555259 NT5C3AQ9H0P0 336 aa10.89□□□□□ -0.67
SCFD1-215ENST00000555259 PIDD1Q9HB75 910 aa10.89□□□□□ -0.67
SCFD1-215ENST00000555259 TBC1D22BQ9NU19 505 aa10.89□□□□□ -0.67
SCFD1-215ENST00000555259 TCEAL9Q9UHQ7 104 aa10.89□□□□□ -0.67
SCFD1-215ENST00000555259 SSX2IPQ9Y2D8 614 aa10.89□□□□□ -0.67
SCFD1-215ENST00000555259 FAN1Q9Y2M0 1017 aa10.89□□□□□ -0.67
SCFD1-215ENST00000555259 SPEGQ15772 3267 aa10.88□□□□□ -0.67
SCFD1-215ENST00000555259 CCDC69A6NI79 296 aa10.88□□□□□ -0.67
SCFD1-215ENST00000555259 FAM170BA6NMN3 283 aa10.88□□□□□ -0.67
SCFD1-215ENST00000555259 SH2B2O14492 632 aaPredicted RBP10.88□□□□□ -0.67
SCFD1-215ENST00000555259 NRP1O14786 923 aa10.88□□□□□ -0.67
SCFD1-215ENST00000555259 PRC1O43663 620 aa10.88□□□□□ -0.67
SCFD1-215ENST00000555259 TBC1D4O60343 1298 aa10.88□□□□□ -0.67
SCFD1-215ENST00000555259 SPATA31D3P0C874 917 aa10.88□□□□□ -0.67
SCFD1-215ENST00000555259 SFPQP23246 707 aaKnown RBP eCLIP10.88□□□□□ -0.67
SCFD1-215ENST00000555259 MAGEA9P43362 315 aa10.88□□□□□ -0.67
SCFD1-215ENST00000555259 CLK2P49760 499 aaKnown RBP10.88□□□□□ -0.67
SCFD1-215ENST00000555259 RAB27AP51159 221 aa10.88□□□□□ -0.67
SCFD1-215ENST00000555259 AFF1P51825 1210 aaKnown RBP10.88□□□□□ -0.67
SCFD1-215ENST00000555259 PRKCQQ04759 706 aa10.88□□□□□ -0.67
SCFD1-215ENST00000555259 MLF2Q15773 248 aaPredicted RBP10.88□□□□□ -0.67
SCFD1-215ENST00000555259 PPP1R18Q6NYC8 613 aa10.88□□□□□ -0.67
SCFD1-215ENST00000555259 PARM1Q6UWI2 310 aa10.88□□□□□ -0.67
SCFD1-215ENST00000555259 AGMOQ6ZNB7 445 aa10.88□□□□□ -0.67
SCFD1-215ENST00000555259 SPATA31D4Q6ZUB0 917 aa10.88□□□□□ -0.67
SCFD1-215ENST00000555259 TAS1R1Q7RTX1 841 aa10.88□□□□□ -0.67
SCFD1-215ENST00000555259 TMTC2Q8N394 836 aa10.88□□□□□ -0.67
SCFD1-215ENST00000555259 URGCPQ8TCY9 931 aa10.88□□□□□ -0.67
SCFD1-215ENST00000555259 HDAC7Q8WUI4 952 aa10.88□□□□□ -0.67
SCFD1-215ENST00000555259 PHKBQ93100 1093 aa10.88□□□□□ -0.67
SCFD1-215ENST00000555259 PLEKHA4Q9H4M7 779 aa10.88□□□□□ -0.67
SCFD1-215ENST00000555259 RXFP1Q9HBX9 757 aa10.88□□□□□ -0.67
SCFD1-215ENST00000555259 NRBP2Q9NSY0 501 aa10.88□□□□□ -0.67
SCFD1-215ENST00000555259 MARCH5Q9NX47 278 aa10.88□□□□□ -0.67
SCFD1-215ENST00000555259 ZDHHC7Q9NXF8 308 aa10.88□□□□□ -0.67
SCFD1-215ENST00000555259 GMEB2Q9UKD1 530 aa10.88□□□□□ -0.67
SCFD1-215ENST00000555259 ZFP37Q9Y6Q3 630 aaPredicted RBP10.88□□□□□ -0.67
SCFD1-215ENST00000555259 A0A087WZ62 844 aa10.87□□□□□ -0.67
SCFD1-215ENST00000555259 SLC30A4O14863 429 aa10.87□□□□□ -0.67
SCFD1-215ENST00000555259 GLUD2P49448 558 aa10.87□□□□□ -0.67
SCFD1-215ENST00000555259 PRKCEQ02156 737 aa10.87□□□□□ -0.67
SCFD1-215ENST00000555259 COL9A2Q14055 689 aaPredicted RBP10.87□□□□□ -0.67
SCFD1-215ENST00000555259 SLC44A4Q53GD3 710 aa10.87□□□□□ -0.67
SCFD1-215ENST00000555259 TSSK4Q6SA08 328 aa10.87□□□□□ -0.67
SCFD1-215ENST00000555259 RNF168Q8IYW5 571 aaPredicted RBP10.87□□□□□ -0.67
SCFD1-215ENST00000555259 FANCBQ8NB91 859 aa10.87□□□□□ -0.67
SCFD1-215ENST00000555259 NETO1Q8TDF5 533 aa10.87□□□□□ -0.67
SCFD1-215ENST00000555259 CRYGNQ8WXF5 182 aa10.87□□□□□ -0.67
SCFD1-215ENST00000555259 PGBD4Q96DM1 585 aa10.87□□□□□ -0.67
SCFD1-215ENST00000555259 FAM193BQ96PV7 902 aaPredicted RBP10.87□□□□□ -0.67
SCFD1-215ENST00000555259 FDXACB1Q9BRP7 624 aaPredicted RBP10.87□□□□□ -0.67
SCFD1-215ENST00000555259 PRKD2Q9BZL6 878 aa10.87□□□□□ -0.67
SCFD1-215ENST00000555259 LTB4R2Q9NPC1 389 aa10.87□□□□□ -0.67
SCFD1-215ENST00000555259 PRG3Q9Y2Y8 225 aaPredicted RBP10.87□□□□□ -0.67
SCFD1-215ENST00000555259 SAMM50Q9Y512 469 aa10.87□□□□□ -0.67
SCFD1-215ENST00000555259 PCDHB2Q9Y5E7 798 aa10.87□□□□□ -0.67
SCFD1-215ENST00000555259 CNOT1A5YKK6 2376 aaKnown RBP10.87□□□□□ -0.67
SCFD1-215ENST00000555259 MYH15Q9Y2K3 1946 aa10.87□□□□□ -0.67
SCFD1-215ENST00000555259 ZZEF1O43149 2961 aa10.87□□□□□ -0.67
SCFD1-215ENST00000555259 SMCO2A6NFE2 343 aa10.86□□□□□ -0.67
SCFD1-215ENST00000555259 WDR64B1ANS9 1081 aa10.86□□□□□ -0.67
SCFD1-215ENST00000555259 GAS2O43903 313 aaKnown RBP10.86□□□□□ -0.67
SCFD1-215ENST00000555259 EFEMP2O95967 443 aa10.86□□□□□ -0.67
SCFD1-215ENST00000555259 C1RP00736 705 aa10.86□□□□□ -0.67
SCFD1-215ENST00000555259 POMCP01189 267 aa10.86□□□□□ -0.67
SCFD1-215ENST00000555259 CYP3A4P08684 503 aa10.86□□□□□ -0.67
SCFD1-215ENST00000555259 CD72P21854 359 aa10.86□□□□□ -0.67
SCFD1-215ENST00000555259 LIFRP42702 1097 aa10.86□□□□□ -0.67
SCFD1-215ENST00000555259 CDC42EP1Q00587 391 aa10.86□□□□□ -0.67
SCFD1-215ENST00000555259 SETQ01105 290 aaPredicted RBP10.86□□□□□ -0.67
SCFD1-215ENST00000555259 NUCB1Q02818 461 aa10.86□□□□□ -0.67
SCFD1-215ENST00000555259 SPEM2Q0P670 501 aa10.86□□□□□ -0.67
SCFD1-215ENST00000555259 ZBTB41Q5SVQ8 909 aa10.86□□□□□ -0.67
SCFD1-215ENST00000555259 RSPO2Q6UXX9 243 aaPredicted RBP10.86□□□□□ -0.67
SCFD1-215ENST00000555259 PALB2Q86YC2 1186 aa10.86□□□□□ -0.67
SCFD1-215ENST00000555259 CLDN23Q96B33 292 aa10.86□□□□□ -0.67
SCFD1-215ENST00000555259 TMEM87BQ96K49 555 aa10.86□□□□□ -0.67
SCFD1-215ENST00000555259 RSAD1Q9HA92 442 aa10.86□□□□□ -0.67
SCFD1-215ENST00000555259 PRMT8Q9NR22 394 aaPredicted RBP10.86□□□□□ -0.67
SCFD1-215ENST00000555259 KANSL3Q9P2N6 904 aa10.86□□□□□ -0.67
SCFD1-215ENST00000555259 SLC12A7Q9Y666 1083 aa10.86□□□□□ -0.67
SCFD1-215ENST00000555259 DYNC1LI1Q9Y6G9 523 aaKnown RBP10.86□□□□□ -0.67
SCFD1-215ENST00000555259 WDFY3Q8IZQ1 3526 aa10.86□□□□□ -0.67
SCFD1-215ENST00000555259 CNTNAP5Q8WYK1 1306 aa10.86□□□□□ -0.67
SCFD1-215ENST00000555259 CEP295Q9C0D2 2601 aa10.86□□□□□ -0.67
SCFD1-215ENST00000555259 LOC105378220A0A1B0GUY1 285 aaPredicted RBP10.86□□□□□ -0.67
SCFD1-215ENST00000555259 TGM5O43548 720 aa10.86□□□□□ -0.67
SCFD1-215ENST00000555259 FSHRP23945 695 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms